BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17265.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318490 jgi|Araly1|318490|fgenesh1_pm.C_scaffold_3001506 773 0.0
Ahg479229 jgi|Araly1|479229|fgenesh2_kg.3__1930__AT3G17530.1 159 3e-38
Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 148 6e-35
Ahg899807 jgi|Araly1|899807|Al_scaffold_0004_457 134 2e-30
Ahg929603 jgi|Araly1|929603|scaffold_302060.1 130 2e-29
> Ahg318490 jgi|Araly1|318490|fgenesh1_pm.C_scaffold_3001506
Length=951
Score = 773 bits (418), Expect = 0.0
Identities = 594/676 (88%), Gaps = 24/676 (4%)
Strand=Plus/Plus
Query 190 GTGACAGAGATGAATACTTTGGTTCATAGCATCAATCTCCGTGGAATCCAAAACAGCTTT 249
|||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 142 GTGACAGAGATGAATACTCTGATCCATAGCATCAATCTCCGTGGAATCCAAAACAGCTTT 201
Query 250 GATCCATCCATTGGTGTTGAACG-TAAACTTTACGAGCTAAATGATCCTGAACATGATAA 308
||| |||||||||| || | | | |||||||||||||||||| ||||| |||||||||||
Sbjct 202 GATTCATCCATTGGGGTCG-ATGTTAAACTTTACGAGCTAAAGGATCCAGAACATGATAA 260
Query 309 GATAC-TTGGTATTATCTCTCACTGCGATGGTTTATTATTGTGCGCTACCAAGGAC---A 364
||||| || |||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 261 GATACGTT-GTATTATCTCTCACTGTGATGGTTTATTATTGTGCACTACCAAGGACAATA 319
Query 365 AGACTAGACTCGTGGTTTGGAACCCTTGTACTGGTCAAACCAGGTGGATCCAAATCAAGA 424
| | |||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 320 ATAGTAGAGTCGTGGTTTGGAACCCTTGTACTGGTCAAACCAGGTGGATCC-AATC--CA 376
Query 425 ATGTGTTCAAGAACAATCCCCAGCTTATTCTCTTGGTAATTAAGTTTAAAATCTATGAGT 484
|| |||||| | || ||| |||||||||| | ||||||| | ||||||||||
Sbjct 377 ATATGTTCATG---AA----CAG-TTATTCTCTT-G---CTAAGTTTGAGATCTATGAGT 424
Query 485 TCAACTCTGATTCATGGAGAATTCTTGATGACATCTCTCCTGTTTGTTTCATACGCTCAA 544
||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| ||
Sbjct 425 TCAACTCTGATTCATGGAGAATTCTTGATGAGATCTCTCCTGATTGTTTCAGACGTTCCG 484
Query 545 ATGGCGTGAATTTGAAGGGAAATGCTTATTTTGTT-GCTTCAGATAAAGAAAGCAAATTC 603
||||||||| |||||||||||||||||||| ||| | |||| || ||||||||||| |
Sbjct 485 ATGGCGTGACTTTGAAGGGAAATGCTTATTG-GTTTGGTTCAAATCTAGAAAGCAAATCC 543
Query 604 ATACTCAAGTTTGATTTCACAACAGAGAGATTCCTACGTCTATCGTTTCCTTCTCAGAAC 663
||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 544 ATACTCAAGTTTGATTTCACAACAGAGAGATTCGGACGTCTATCGCTTCCTTTTCAGAAT 603
Query 664 GATGATCAAATTGCGGTTCTATCAGTTGTTAGACAAGAGAAACTTGCCTTGTTACAACAA 723
|| ||| || || | ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 604 AATTATCGAAGTGTGTTTCTATCAGTTGTTAGAGAAGAGAAACTTGCCTTGATACAACAG 663
Query 724 AGGTTTGATACATCTTCAATAAAGATGAATATATGGGTGACCAAAACTAAGATCGATGCG 783
||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 664 AGGCTTGATACAGATTCATTAAAGATGAATATATGGGTGACCAAAACTAAGATCGATGAG 723
Query 784 GACAAAGACTTGTCTTGGAGCAACTTCTTAGTAGTAGATTTTGGTAAAGTTACATTAACA 843
||||||||||||||||||||||||||||||||||| |||||||||| | || | ||||||
Sbjct 724 GACAAAGACTTGTCTTGGAGCAACTTCTTAGTAGTGGATTTTGGTAGATTTCCGTTAACA 783
Query 844 AGTGAGCCGTTGAGTT 859
|||||| |||||||||
Sbjct 784 AGTGAGACGTTGAGTT 799
Score = 219 bits (118), Expect = 5e-56
Identities = 134/142 (94%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 1 ATGATGTTTGCTTATCTTCCACCTGATTTAGAATCGGAAATACTCTCTAGGGTTCCTGCC 60
|||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGATGTTTGCTGATCTTCCAAGTGATTTAGAATCCGAAATACTCTCTAGGGTTCCTGCC 60
Query 61 ACATTTCTAAAAGAATTGCAAACTACTTGCAAACGATGGTACGCTTTATTTAGAGATCCG 120
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 ACATCTCTAAAAGAATTGCAAACTACTTGCAAACGATGGTACACTTTATTTAGAGATCCA 120
Query 121 ATATTCGTCAAGAAGAACTTGG 142
| ||||||||||||||||||||
Sbjct 121 AGATTCGTCAAGAAGAACTTGG 142
Score = 191 bits (103), Expect = 1e-47
Identities = 121/130 (93%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 903 GATTCGTCACATTGAAAGGAAGACTATAATTTACTTTGCTAAAGAGGGTATACAAGTTCA 962
|||| |||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 813 GATTAGTCACATTGAAAAGAAGATTAGAATTTACTTTGCTAAAGAGGGTATACAAGTTCA 872
Query 963 TCAAGAGATTGCACAGAAACCAAAAGGTTGTTGTTCATTTCTCGTCAGTTATGTTCCAAG 1022
|||| ||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 873 TCAAAAGATTGCACGGAAACCCAAAGGTTGTTGTCCATTTCTCGTCAGCTATGTTCCAAG 932
Query 1023 TTTGGTTCAA 1032
||||||||||
Sbjct 933 TTTGGTTCAA 942
> Ahg479229 jgi|Araly1|479229|fgenesh2_kg.3__1930__AT3G17530.1
Length=1278
Score = 159 bits (86), Expect = 3e-38
Identities = 137/160 (86%), Gaps = 10/160 (6%)
Strand=Plus/Plus
Query 1 ATGATG-TTTGCTTATCTTCCAC-CTGATTTAGAATCGGAAATACTCTCTAGGGTTCCTG 58
|||||| ||| | ||||||||| | ||||| |||||||||||||| | ||||||||| |
Sbjct 1 ATGATGATTT-CCGATCTTCCACAC-GATTTGGAATCGGAAATACTTTATAGGGTTCCGG 58
Query 59 CCACA-TTTCTA-AAAGAATTGCAA-ACTACTTGCAAACGATGGTACGCTTTATTTAGAG 115
| | | | |||| || || || || ||||||||||||||||||||||||||||| ||||
Sbjct 59 CGA-AGTCTCTAGCAA-AA-TGGAAGACTACTTGCAAACGATGGTACGCTTTATTCAGAG 115
Query 116 ATCCGATATTCGTCAAGAAGAACTTGGGTAAAGCAGCAAC 155
|||||| |||||||||||||||||| ||||||||||||||
Sbjct 116 ATCCGAGATTCGTCAAGAAGAACTTTGGTAAAGCAGCAAC 155
> Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1
Length=1112
Score = 148 bits (80), Expect = 6e-35
Identities = 126/146 (86%), Gaps = 12/146 (8%)
Strand=Plus/Plus
Query 1 ATGATG-TTTGCTTATCTTCCAC-CTGATTTAGAATCGGAAATACTCTCTAGGGTTCCTG 58
|||||| ||| || ||||||||| | || |||||||||||||||||||||||||||| |
Sbjct 13 ATGATGATTT-CTGATCTTCCACAC-GAACTAGAATCGGAAATACTCTCTAGGGTTCC-G 69
Query 59 -CCACATT-TCTA--AAAGAATTGCAAACTACTTGCAAACGATGGTACGCTTTATTTAGA 114
||| | | |||| |||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 70 ACCA-AGTCTCTAGCAAAG--TTGCAAACTACATGCAAACGATGGTACGCTTTATTCAGA 126
Query 115 GATCCGATATTCGTCAAGAAGAACTT 140
||||||| |||||| |||||||||||
Sbjct 127 GATCCGAGATTCGTGAAGAAGAACTT 152
> Ahg899807 jgi|Araly1|899807|Al_scaffold_0004_457
Length=1125
Score = 134 bits (72), Expect = 2e-30
Identities = 122/145 (84%), Gaps = 8/145 (6%)
Strand=Plus/Plus
Query 14 ATCTTCCACCTGATTTAGAATCGGAAATACTCTCTAGGGTTCCTG-CCACA-TTTCTA-A 70
||||||| |||||| ||||| |||||||||||||||||||| | ||| | | ||||
Sbjct 14 ATCTTCCGTATGATTTGGAATCCGAAATACTCTCTAGGGTTCC-GACCA-AGTCTCTAGC 71
Query 71 AAGAATTGCAAACTACTTGCAAACGATGGTACGCTTTATTTAGAGATCCGATA-TTCGTC 129
|| |||| | |||||||||||||||||||||||||||||| |||||||| | | ||| ||
Sbjct 72 AA-AATTTCGAACTACTTGCAAACGATGGTACGCTTTATTCAGAGATCCAA-ACTTCATC 129
Query 130 AAGAAGAACTTGGGTAAAGCAGCAA 154
||||||||||| ||||| ||| |||
Sbjct 130 AAGAAGAACTTTGGTAACGCACCAA 154
> Ahg929603 jgi|Araly1|929603|scaffold_302060.1
Length=932
Score = 130 bits (70), Expect = 2e-29
Identities = 88/96 (92%), Gaps = 3/96 (3%)
Strand=Plus/Plus
Query 322 ATCTCTCACTGCGATGGTTTATTATTGTGCGCTACCAAGGACAAGACTAGACTCGTGGTT 381
|||| ||||||||| ||||||||||||||| | ||||||||| | | ||| |||||||||
Sbjct 136 ATCTTTCACTGCGACGGTTTATTATTGTGCACCACCAAGGAC-A-A-TAGTCTCGTGGTT 192
Query 382 TGGAACCCTTGTACTGGTCAAACCAGGTGGATCCAA 417
||||||||||||||||||||||||||||||||||||
Sbjct 193 TGGAACCCTTGTACTGGTCAAACCAGGTGGATCCAA 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5