BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17280.1 Length=1161 Score E Sequences producing significant alignments: (Bits) Value Ahg904690 jgi|Araly1|904690|Al_scaffold_0003_1818 1435 0.0 > Ahg904690 jgi|Araly1|904690|Al_scaffold_0003_1818 Length=1221 Score = 1435 bits (777), Expect = 0.0 Identities = 933/1009 (92%), Gaps = 8/1009 (1%) Strand=Plus/Plus Query 154 GCAAGGGAGACGGTGTTTCTGATGAATCATGAGGTTAATTCGATTAGCGTAGATATCCAT 213 ||||| |||| ||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct 106 GCAAGTGAGATGGTGTTTCTGATGAATCATGAGGTTTATTCGATTAGCGTCGAAATCCAT 165 Query 214 GGAATTCCAAAAGGCTATTCGGTATCCATGGATTTTACAGGTACACTCACCATACCCGAA 273 |||||||||||||||| || || |||||||| |||||||||||||||||||||||||| Sbjct 166 GGAATTCCAAAAGGCTGTTGGGCATCCATGGGGTTTACAGGTACACTCACCATACCCGAT 225 Query 274 GGTTCAGATTTGGAAATATTTCGAATCCATCAC-TGCAATGGTTTGTTCTTATGCGCCAC 332 | ||||||||||||||||||||||||||||||| || | ||||| || ||||||||||| Sbjct 226 GATTCAGATTTGGAAATATTTCGAATCCATCACTTG-GACGGTTTATTATTATGCGCCAC 284 Query 333 AATGAACTGTAGACTCGTAGTTTGGAACCCCTGTACCGGTCAAATCACATGGATCATACC 392 |||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| Sbjct 285 AATGGACTGTAGACTCGTAGTTTGGAATCCCTGTACTGGTCAAATCACATGGATCAAACC 344 Query 393 TAGAACTCGTTACGATAGTGATGATATATATGCTCTAGGATGTGGTGACGACAAATCATC 452 ||||| | ||||| |||||||||||||||||||||||||||||||| || |||||||||| Sbjct 345 TAGAATTTGTTACAATAGTGATGATATATATGCTCTAGGATGTGGTAACAACAAATCATC 404 Query 453 TTCTTTACATAGCTACAAAATCTTGAGGTGTTGCGATGACAATCA-GAAAAAACCAGTGT 511 ||||||| ||||||||||||||||||||||||||||||||||||| | ||| || | || Sbjct 405 TTCTTTAGATAGCTACAAAATCTTGAGGTGTTGCGATGACAATCACG-AAATGCCTGAGT 463 Query 512 CTGAAATCTATGATTTTAGTTCTAGTTCATGGAGGGTTCTTGATGGCGTCACTGCAAATT 571 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 464 CTGAAATCTATGATTTTAGTTCTAGTTCATGGAGGGGTCTTGATGGCGTCACTGCAAATT 523 Query 572 GTTTCATAGAATGTAATGGCGTGGCTTTGAAGGAAAGTGCTTACTGGTATGCTTCAGAT- 630 | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 524 GCTTCATAGAATGTAATGGTGTGACTTTGAAGGAAAGTGCTTACTGGTATGCTTCAGATG 583 Query 631 AAAAGAGAAACTCCCAAGGGTAAATTCATACTCAGGTTTGATTTTGCAACGGAGAGATTT 690 |||| |||||| |||| ||||||||||||||||||||||||||| |||||||||| |||| Sbjct 584 AAAA-AGAAACCCCCACGGGTAAATTCATACTCAGGTTTGATTTCGCAACGGAGACATTT 642 Query 691 GCACGTCTATGTCTTCCCCTTAATTTTCAGAGGGATCGTGATAATAAGAGTGTGGTTGTG 750 |||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||| Sbjct 643 GCACGTCTATGTCTGCCCCTTACCTTTCAGAGGGATCATGATAATAAGAGTGTGCTTGTG 702 Query 751 TCTGTTGTTGGAGAAGAGAAGCTTGCTTTGTTACAGCAGTTCGACCATAGGGTTCATGGT 810 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 703 TCTGTTGTTGGAGAAGAGAAACTTGCTTTGTTACAGCAGTTCGACCATAGGGTTCATAGT 762 Query 811 TTGAAATATTCTAAGATAAAGATATGGGTGACCGATACTAAGATCGGTGAGGGCAAAGAC 870 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 763 TTGAAATATTCTAAGATAAAGATATGGGTGACCGATACTAAGATCGGTGAGGCCAAAGAC 822 Query 871 TTGTCGTGGAGCAACATCTTAGTAGAGGAACTTGCTGACGATAATCTACCAAGTGTAACG 930 ||||||||||||||| | ||||| | ||| |||||||||||||||||||| |||||||| Sbjct 823 TTGTCGTGGAGCAACTTTTTAGTTGTGGATCTTGCTGACGATAATCTACCGAGTGTAACA 882 Query 931 AGTTTCCTGTTGGACGAGGAGAAAAAAGTGGCAGTGTGTTCTGACGCAGTGTGTTCTGAT 990 |||||||||||||| || ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 883 AGTTTCCTGTTGGATGAAGAGAAAAGAGTGGCTGTGTGTTCTGATGCAGTGTGTTCTGAT 942 Query 991 ACAGACACGGAAGATGAAGATAGGAGAAGAATCTACATTGTTGGAGAAGGTGTAGATGAA 1050 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || Sbjct 943 CCAGACACGGAAGATGAAGATAGGAGCAGAATCTACATTGTTGGAGAAGATGTAGATAAA 1002 Query 1051 TTCGTCTATGATGAAGTTTCAACGGAAACATC-CCACAATTGGCCATTTCTCGTCAGTTA 1109 |||||||||||||| |||||||| ||||||| || |||| |||||||||||||| ||| Sbjct 1003 TTCGTCTATGATGACGTTTCAACAGAAACATGGCC-CAATCAGCCATTTCTCGTCAATTA 1061 Query 1110 TGTTCCAAATCTGGTTCACATTGAGAAAGATGCACCCATAGTCGAAGTG 1158 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1062 TGTTCCAAATCTGGTTCACATTGAGAAAGATGCACCCATAGTCGAAGTG 1110 Score = 148 bits (80), Expect = 7e-35 Identities = 98/107 (92%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1 ATGACGACGATTTCCGATCTTCCATACGATTTGTTACCGGAGATACTCTCTAGACTTCCG 60 ||||||| |||||||||||||||||||||||||||| |||| ||||||||||| |||||| Sbjct 1 ATGACGATGATTTCCGATCTTCCATACGATTTGTTATCGGAAATACTCTCTAGGCTTCCG 60 Query 61 ACCAAGTCTATACCGAAACTGAAAACCACTTGCAAAAAATGGTACGC 107 | ||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 61 ATCAAGTCTCTACCGAAACTGAAAACCACTTGCAAGCGATGGTACGC 107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43307633712 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5