BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17280.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904690 jgi|Araly1|904690|Al_scaffold_0003_1818 1435 0.0
> Ahg904690 jgi|Araly1|904690|Al_scaffold_0003_1818
Length=1221
Score = 1435 bits (777), Expect = 0.0
Identities = 933/1009 (92%), Gaps = 8/1009 (1%)
Strand=Plus/Plus
Query 154 GCAAGGGAGACGGTGTTTCTGATGAATCATGAGGTTAATTCGATTAGCGTAGATATCCAT 213
||||| |||| ||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 106 GCAAGTGAGATGGTGTTTCTGATGAATCATGAGGTTTATTCGATTAGCGTCGAAATCCAT 165
Query 214 GGAATTCCAAAAGGCTATTCGGTATCCATGGATTTTACAGGTACACTCACCATACCCGAA 273
|||||||||||||||| || || |||||||| ||||||||||||||||||||||||||
Sbjct 166 GGAATTCCAAAAGGCTGTTGGGCATCCATGGGGTTTACAGGTACACTCACCATACCCGAT 225
Query 274 GGTTCAGATTTGGAAATATTTCGAATCCATCAC-TGCAATGGTTTGTTCTTATGCGCCAC 332
| ||||||||||||||||||||||||||||||| || | ||||| || |||||||||||
Sbjct 226 GATTCAGATTTGGAAATATTTCGAATCCATCACTTG-GACGGTTTATTATTATGCGCCAC 284
Query 333 AATGAACTGTAGACTCGTAGTTTGGAACCCCTGTACCGGTCAAATCACATGGATCATACC 392
|||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 285 AATGGACTGTAGACTCGTAGTTTGGAATCCCTGTACTGGTCAAATCACATGGATCAAACC 344
Query 393 TAGAACTCGTTACGATAGTGATGATATATATGCTCTAGGATGTGGTGACGACAAATCATC 452
||||| | ||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 345 TAGAATTTGTTACAATAGTGATGATATATATGCTCTAGGATGTGGTAACAACAAATCATC 404
Query 453 TTCTTTACATAGCTACAAAATCTTGAGGTGTTGCGATGACAATCA-GAAAAAACCAGTGT 511
||||||| ||||||||||||||||||||||||||||||||||||| | ||| || | ||
Sbjct 405 TTCTTTAGATAGCTACAAAATCTTGAGGTGTTGCGATGACAATCACG-AAATGCCTGAGT 463
Query 512 CTGAAATCTATGATTTTAGTTCTAGTTCATGGAGGGTTCTTGATGGCGTCACTGCAAATT 571
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 464 CTGAAATCTATGATTTTAGTTCTAGTTCATGGAGGGGTCTTGATGGCGTCACTGCAAATT 523
Query 572 GTTTCATAGAATGTAATGGCGTGGCTTTGAAGGAAAGTGCTTACTGGTATGCTTCAGAT- 630
| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 524 GCTTCATAGAATGTAATGGTGTGACTTTGAAGGAAAGTGCTTACTGGTATGCTTCAGATG 583
Query 631 AAAAGAGAAACTCCCAAGGGTAAATTCATACTCAGGTTTGATTTTGCAACGGAGAGATTT 690
|||| |||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 584 AAAA-AGAAACCCCCACGGGTAAATTCATACTCAGGTTTGATTTCGCAACGGAGACATTT 642
Query 691 GCACGTCTATGTCTTCCCCTTAATTTTCAGAGGGATCGTGATAATAAGAGTGTGGTTGTG 750
|||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 643 GCACGTCTATGTCTGCCCCTTACCTTTCAGAGGGATCATGATAATAAGAGTGTGCTTGTG 702
Query 751 TCTGTTGTTGGAGAAGAGAAGCTTGCTTTGTTACAGCAGTTCGACCATAGGGTTCATGGT 810
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 703 TCTGTTGTTGGAGAAGAGAAACTTGCTTTGTTACAGCAGTTCGACCATAGGGTTCATAGT 762
Query 811 TTGAAATATTCTAAGATAAAGATATGGGTGACCGATACTAAGATCGGTGAGGGCAAAGAC 870
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 763 TTGAAATATTCTAAGATAAAGATATGGGTGACCGATACTAAGATCGGTGAGGCCAAAGAC 822
Query 871 TTGTCGTGGAGCAACATCTTAGTAGAGGAACTTGCTGACGATAATCTACCAAGTGTAACG 930
||||||||||||||| | ||||| | ||| |||||||||||||||||||| ||||||||
Sbjct 823 TTGTCGTGGAGCAACTTTTTAGTTGTGGATCTTGCTGACGATAATCTACCGAGTGTAACA 882
Query 931 AGTTTCCTGTTGGACGAGGAGAAAAAAGTGGCAGTGTGTTCTGACGCAGTGTGTTCTGAT 990
|||||||||||||| || ||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 883 AGTTTCCTGTTGGATGAAGAGAAAAGAGTGGCTGTGTGTTCTGATGCAGTGTGTTCTGAT 942
Query 991 ACAGACACGGAAGATGAAGATAGGAGAAGAATCTACATTGTTGGAGAAGGTGTAGATGAA 1050
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 943 CCAGACACGGAAGATGAAGATAGGAGCAGAATCTACATTGTTGGAGAAGATGTAGATAAA 1002
Query 1051 TTCGTCTATGATGAAGTTTCAACGGAAACATC-CCACAATTGGCCATTTCTCGTCAGTTA 1109
|||||||||||||| |||||||| ||||||| || |||| |||||||||||||| |||
Sbjct 1003 TTCGTCTATGATGACGTTTCAACAGAAACATGGCC-CAATCAGCCATTTCTCGTCAATTA 1061
Query 1110 TGTTCCAAATCTGGTTCACATTGAGAAAGATGCACCCATAGTCGAAGTG 1158
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 TGTTCCAAATCTGGTTCACATTGAGAAAGATGCACCCATAGTCGAAGTG 1110
Score = 148 bits (80), Expect = 7e-35
Identities = 98/107 (92%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1 ATGACGACGATTTCCGATCTTCCATACGATTTGTTACCGGAGATACTCTCTAGACTTCCG 60
||||||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 1 ATGACGATGATTTCCGATCTTCCATACGATTTGTTATCGGAAATACTCTCTAGGCTTCCG 60
Query 61 ACCAAGTCTATACCGAAACTGAAAACCACTTGCAAAAAATGGTACGC 107
| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 61 ATCAAGTCTCTACCGAAACTGAAAACCACTTGCAAGCGATGGTACGC 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5