BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17300.1

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929580 jgi|Araly1|929580|scaffold_302037.1                        603    6e-172


> Ahg929580 jgi|Araly1|929580|scaffold_302037.1
Length=341

 Score =  603 bits (326),  Expect = 6e-172
 Identities = 336/341 (99%), Gaps = 0/341 (0%)
 Strand=Plus/Plus

Query  107  GCTCAAGATCTCTTGTGAAAATGCCGTCTCTGCAAACTTCTCTGCCTCCTGAACTCGCTA  166
            |||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    GCTCGAGATCTCCTGTGAAAATGCCGTCTTTGCAAACTTCTCTGCCTCCTGAACTCGCTA  60

Query  167  ACAATGTGGTTAGGTTGTACCGAGAATGTCTTCGTAGAGCTAAATTTATTGGTAAGCAGC  226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ACAATGTGGTTAGGTTGTACCGAGAATGTCTTCGTAGAGCTAAATTTATTGGTAAGCAGC  120

Query  227  AACACAACACTGAGCTAGTGGTTGGTATGGTGAGGCAACAATTTAAGAAACACATGAATG  286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AACACAACACTGAGCTAGTGGTTGGTATGGTGAGGCAACAATTTAAGAAACACATGAATG  180

Query  287  AGACAGACCCTGAGAAGATTCAGAAGCTTAAAGATGATGCTGCTCGGGGACTCATCAATC  346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGACAGACCCTGAGAAGATTCAGAAGCTTAAAGATGATGCTGCTCGGGGACTCATCAATC  240

Query  347  ACATGTTGTTTGAGTCAGCGAAGCTGACAGGAGGCAAGGTTAGCCAGAGATCCTGATGCA  406
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACATGTTGTTTGAGTCAGCAAAGCTGACAGGAGGCAAGGTTAGCCAGAGATCCTGATGCA  300

Query  407  GTCTGGTTGCAGACTCTCCCATTGTTATtctctctctatct  447
            ||||||||||||||||||||||||||| |||||||||||||
Sbjct  301  GTCTGGTTGCAGACTCTCCCATTGTTACTCTCTCTCTATCT  341



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5