BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17320.1
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904694 jgi|Araly1|904694|Al_scaffold_0003_1822 507 1e-142
Ahg333398 jgi|Araly1|333398|fgenesh1_pm.C_scaffold_769000001 159 3e-38
Ahg318446 jgi|Araly1|318446|fgenesh1_pm.C_scaffold_3001462 119 6e-26
Ahg900496 jgi|Araly1|900496|Al_scaffold_0004_1146 115 7e-25
Ahg930018 jgi|Araly1|930018|scaffold_302475.1 69.4 6e-11
> Ahg904694 jgi|Araly1|904694|Al_scaffold_0003_1822
Length=1077
Score = 507 bits (274), Expect = 1e-142
Identities = 456/539 (85%), Gaps = 32/539 (6%)
Strand=Plus/Plus
Query 1 ATGACGAAAATTTCCGATCTTCCTCGGGATTTGGCAGAGGAGGTGCTCTCTAGGGTCCCA 60
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGACGAAGATTTCCGATCTTCCTAGGGATTTGGCAGAGGAGGTGCTCTCTAGGGTTCCA 60
Query 61 GTGACATAC-CTAAGAGCAATACGATTCACTTGCAAAAAGTGGAACACTTTAACCAAACG 119
|| |||| | || |||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 61 GTTACAT-CTCTGAGAGCAGTACGATTTACTTGCAAAAAGTGGAACACTTTAACTAAACA 119
Query 120 TAGAAGCTTTACAAAGAAGCTGATTGGTCAAG-AAAA--AG--CCGAAGCA-AA--A-GT 170
| | |||||||||||||||||| || |||||| |||| || || ||| | || | |
Sbjct 120 TCGGAGCTTTACAAAGAAGCTGGTTTGTCAAGCAAAAGCAGAACCAAAGAAGAAGCAGGC 179
Query 171 GAAAGAGTTTCATGCGATCATGACGTTGAATTCT-AGACTTCATCTGATGAGCGTCAATC 229
||| ||||||||||||||||||||| |||||| | || || ||||||||||||||||||
Sbjct 180 GAAGGAGTTTCATGCGATCATGACGATGAATTATAAG-GTTTATCTGATGAGCGTCAATC 238
Query 230 TAGATGGAATTCACAAAGACGAAAACGTTGAATCATCTATAAAGCAGAAAGGTAAACTTA 289
|||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 239 TAGATGAAATTCACAAAGATGACAACGTTGAATCATCTATAAAGCAGAAAGGTAAACTTA 298
Query 290 TTAGCCTAACCGTTGCTGATCCTGATAGAATAGTTATATCTCAAGTTTATCACTGCGATG 349
||||||||| ||||||||||| || | || || ||||||||||||| |||||| ||||
Sbjct 299 TTAGCCTAAACGTTGCTGATC--GA-ATAA--GT-ATATCTCAAGTTTGTCACTGTGATG 352
Query 350 GTTTGTTGTTATGCATCACCAATGAAATAAACTCTAGGCTTGTAGTTTGGAACCCTTATA 409
||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||
Sbjct 353 GTTTGTTGTTATGCATCACCAATGACA-A--CTCTAGGCTTGTGGTTTGGAACCCTTATT 409
Query 410 GTGGGCAAACTAGGTGGATCGAACCTAGAACTTCTTACC-GCGAATGGGAC-A-T-C--- 462
||||||||| || || || ||||| ||| ||||||| | || |||||| | | |
Sbjct 410 CTGGGCAAACAAGAAGGGTCCAACCTCGAATTTCTTACAAGAGA-TGGGACTACTACAAG 468
Query 463 TACGCTCTAGGATACGAGA-GTAAGAACAACGCCAAACGAAGCTACAAAATTTTGAGAT 520
|| ||||| || ||||||| | || |||||| | | || ||| |||||||||||||||
Sbjct 469 TATGCTCTCGGGTACGAGATG-AATAACAACTCTTATCGTAGCCACAAAATTTTGAGAT 526
> Ahg333398 jgi|Araly1|333398|fgenesh1_pm.C_scaffold_769000001
Length=924
Score = 159 bits (86), Expect = 3e-38
Identities = 171/211 (81%), Gaps = 10/211 (5%)
Strand=Plus/Plus
Query 782 CTAGTTTCTT-ACTATGTTTTGATTTTACAATAGAGAAATTTGGATCGCGTCTGCCTCTG 840
|||||||||| | | |||||||||||||||| ||||| ||||||| |||| || ||||||
Sbjct 437 CTAGTTTCTTGA-TTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTCCTCTG 495
Query 841 CCATTTCGGCCTTGTGT-TGAT-GATACCATAACTCTATCTAGTGTTAGAGAAGAGAAAC 898
|| ||| | | || | | | || |||| | | ||| || ||||||||||||||| | |
Sbjct 496 CC-TTTTGACATT-TTTATAATCGATAATGTGAGTCTCTCGAGTGTTAGAGAAGAGCAGC 553
Query 899 TTGCGGTGTTATATCAGCGATGGGAT-ATAA-CGTGGACGGGGATATGGATTAGTAATAA 956
||| ||||||| |||| | || |||| | || | ||| || ||||||| ||||||||||
Sbjct 554 TTGTGGTGTTACATCACCAAT-GGATGA-AATTGAGGATGGAGATATGGGTTAGTAATAA 611
Query 957 GATTGAGCCTAATGCAGTGTCGTGGAGCAAG 987
||||||||||||||||||||||||||| |||
Sbjct 612 GATTGAGCCTAATGCAGTGTCGTGGAGAAAG 642
> Ahg318446 jgi|Araly1|318446|fgenesh1_pm.C_scaffold_3001462
Length=918
Score = 119 bits (64), Expect = 6e-26
Identities = 138/173 (80%), Gaps = 8/173 (5%)
Strand=Plus/Plus
Query 819 ATTTGGATCGCGTCTGCCTCTGCCATTTCGGCCTTGTGT-TGAT-GATACCATAACTCTA 876
||||||| |||| || |||||||| ||| | | || | | | || |||| | | |||
Sbjct 468 ATTTGGACCGCGACTTCCTCTGCC-TTTTGACATT-TTTATAATCGATAATGTGAGTCTC 525
Query 877 TCTAGTGTTAGAGAAGAGAAACTTGCGGTGTTATATCAGCGATGGGAT-ATAA-CGTGGA 934
|| ||||||||||||||| | |||| ||||||| |||| | || |||| | || | |||
Sbjct 526 TCGAGTGTTAGAGAAGAGCAGCTTGTGGTGTTACATCACCAAT-GGATGA-AATTGAGGA 583
Query 935 CGGGGATATGGATTAGTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGCAAG 987
|| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 584 TGGAGATATGGGTTAGTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGAAAG 636
> Ahg900496 jgi|Araly1|900496|Al_scaffold_0004_1146
Length=1275
Score = 115 bits (62), Expect = 7e-25
Identities = 163/210 (78%), Gaps = 13/210 (6%)
Strand=Plus/Plus
Query 786 TTTCTTACTATGTTTTGATTTTACAATAGAGAAATTTGGATCGCGTCTGCCTCTGCCATT 845
|||| |||||| ||||||||||||| |||| ||||||| |||||||||||||||| ||
Sbjct 772 TTTC-TACTATCCTTTGATTTTACAACCGAGAGATTTGGACCGCGTCTGCCTCTGCC-TT 829
Query 846 T-C-GGCCTTGTGTTGATGATACCATAACTCTATCTAGTGTTAGAGAAGAGAAACTTGCG 903
| | || || | | || ||| | ||| | |||||||||||||||||| | |||||
Sbjct 830 TCCACGCTTTCTATAGA-CATAATGTCACTTTTTCTAGTGTTAGAGAAGAGCAGCTTGCA 888
Query 904 GTGTTATATCAG-C--GAT-GGGA--T-ATAACGTGGACGGGGATATGGATTAGTAATAA 956
|| | | |||| | ||| | | | || ||| | | ||||||||||| ||||||
Sbjct 889 GTACTGTTTCAGTCAAGATATGAACTTGATTCCGTCGTC-AAGATATGGATTACTAATAA 947
Query 957 GATTGAGCCTAATGCAGTGTCGTGGAGCAA 986
||||||||||||||||||||||||||||||
Sbjct 948 GATTGAGCCTAATGCAGTGTCGTGGAGCAA 977
> Ahg930018 jgi|Araly1|930018|scaffold_302475.1
Length=1136
Score = 69.4 bits (37), Expect = 6e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1188 TCCACTTGCGTGCTCTTATGTTCCAAGTTCTGTGCAAATC 1227
||||||||| ||||||||||||||||||||||||||||||
Sbjct 1071 TCCACTTGCTTGCTCTTATGTTCCAAGTTCTGTGCAAATC 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5