BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17330.1
Length=2405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904695 jgi|Araly1|904695|Al_scaffold_0003_1823 1882 0.0
Ahg473949 jgi|Araly1|473949|fgenesh2_kg.1__3903__AT1G48110.2 769 0.0
> Ahg904695 jgi|Araly1|904695|Al_scaffold_0003_1823
Length=1848
Score = 1882 bits (1019), Expect = 0.0
Identities = 1254/1364 (92%), Gaps = 29/1364 (2%)
Strand=Plus/Plus
Query 737 ACTGGCCAGTATAAACAGCCAGGAATCCCCAAGAATGTTTCCACAACAGCTTCTGCACAT 796
||||||||| |||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct 493 ACTGGCCAGAATAAACAGCCAGGAATCCCCAAGAATGTTTCCCCAACAGCTTCCGCGCAT 552
Query 797 TCTCTCCAGGGAAAAACTG----C-TT---AC-G----C-G-AACACACTCTTGCCTTAT 841
||||||||||||||||||| | || || | | | | || ||||| | |||||
Sbjct 553 TCTCTCCAGGGAAAAACTGCCTCCGTTGACACTGTTTCCAGTAGCAGACTCTCGTCTTAT 612
Query 842 GGGAAATCAGACATTGCTAATGGGGTCT-CATCAATTGCTTCATATAGTTATAAACCTTG 900
||| | | ||||||||||| |||| | |||| |||| |||| |||||| || ||| |
Sbjct 613 GGGCACTTTGACATTGCTAA-AGGGTTTCCATCCATTGTTTCAAATAGTTGCAAGCCTCG 671
Query 901 TTCCAAGATTTATGAT-GCCAGAGGTGATAAC-AACACAACTGGAAGTACATATACGAGT 958
||||||||| |||||| | |||||||||| || || |||||||||| || ||||||||
Sbjct 672 TTCCAAGATGTATGATAG-CAGAGGTGAT-ACTGACGTAACTGGAAGTCCAGATACGAGT 729
Query 959 GAACAAAATCGAGG-ATCGAGAACGAGAAGATCAAGAAATCAACTAATTGTCAAAGCATA 1017
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 730 GAACAAAATCGAGGTAT-AAGAACGAGAAGATCAAGAAATCAACTAATTGTCAAAGCTTA 788
Query 1018 TACAACCAAAGCTGGAAATGCTGATGCGGAAGGAAATATTGTGATAAATCCTGATCGATA 1077
|||||||||||||||||| | |||| |||||||||| |||||||||| |||||||| |||
Sbjct 789 TACAACCAAAGCTGGAAACGTTGATTCGGAAGGAAACATTGTGATAAGTCCTGATCAATA 848
Query 1078 TAATAAAGAAGATTTCAGTATTGAATACAGCGATGCCAGGTTTTTTGTGATTAAGTCGTA 1137
||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| |||||
Sbjct 849 TAATAAAGAAGATTTCAGTCTTGATTACAGCGATGCCAAGTTTTTTGTGATTAAATCGTA 908
Query 1138 TAGTGAAGATGATGTTCACAAGAGCATCAAATATGGTGTCTGGTCATCTACATTGAATGG 1197
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 909 TAGTGAAGATGATGTTCACAAGAGCATCAAGTATGGTGTCTGGTCATCAACATTGCATGG 968
Query 1198 GAACAAGAAATTGCAGAGTGTATATGAAGATGCTCAGAGAATAGCCACTGAGAAGTCTCG 1257
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 969 GAACAAGAAATTGCAGGGTGTATATGAAGATACTCAGAGAATACCCACTGAGAAGTCTCG 1028
Query 1258 TGAATGTCCTATTTTCTTATTCTTTTCTGTCAATTCCAGTGGTCTGTTCTGTGGCGTGGC 1317
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1029 TGAATGTCCTATTTTCTTATTCTTTTCTGTCAATGCCAGTGGTCTGTTCTGTGGCGTGGC 1088
Query 1318 TGAGATGACCGGTCCAGTTTCCTTCGACCGAGACATGGATTTTTGGCAGCAAGACAAATG 1377
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1089 TGAGATGACCGGTCCAGTTTCCTTCGACCGCGACATGGATTTTTGGCAGCAAGACAAATG 1148
Query 1378 GAGTGGAAGCTTTCCTGTCAAGTGGCACATTATTAAAGATGTTCCTAATAGCTATTTCAG 1437
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1149 GAGTGGAAGCTTTCCTGTCAAGTGGCACATCATTAAAGATGTTCCTAATAGCTATTTCAG 1208
Query 1438 GCACATTATTTTACATAATAACGAGAATAAGCCAGTGACCAACAGCCGAGACACACAAGA 1497
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GCACATTATTTTACATAATAATGAGAATAAGCCAGTGACCAACAGCCGAGACACACAAGA 1268
Query 1498 GATAATACTGAAACAAGGACTCGAGGTGCTAAAACTATTCAAACATCATGCGGAAAAGAC 1557
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1269 GATAATACTGAAACAAGGACTCGAGGTGCTAAAACTATTCAAAAATCATGCGGAAAAGAC 1328
Query 1558 TTCACTATTAGATGATTTTATGTACTACGAAGACCGCCAGAGACTCATGCAGGAAGAGAG 1617
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1329 TTCACTATTAGATGATTTTATGTACTACGAAAACCGCCAGAGACTCATGCAGGAAGAGAG 1388
Query 1618 AGCTAGACTTCCATTTAGGACCTTTCGCAGGCCATTTCCCGTGCTCAATCTAGATTTTTC 1677
||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 1389 AGCTAGACTTCCATTCAGGACCTTTCGCAGGCCATTTCCCGTGCTTAAACTAGATTGTTA 1448
Query 1678 TGACAGAAGCAAGAAAAGCTCCAAGGATGTCGTTAAGAAGCCTTCAGTGACCTCTGCAGA 1737
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1449 TGACAGAAGCAAGAAAAGCTCCAAGGATGTCGTCAAGAAGCCTCCAGTGACCTCTGCAGA 1508
Query 1738 AACAAA-GGTTGTGCAGTTAAAAAACTCAGATGGGGATGAAAAGAGCAATACACAGGAAG 1796
|||||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1509 AACAAAAGGT-GTGCAGTTAAAAAACTCAGATGGGAATGAAAAGAGCAATCCACAGGAAG 1567
Query 1797 CAACAGACGATTCTACTCCTTCCACTCTGAAGTTTGGCTCTCTCGCCATTAAACCAACTG 1856
||||||| |||||||||||||| ||||||||| |||| |||||| |||||||||| ||||
Sbjct 1568 CAACAGAAGATTCTACTCCTTCAACTCTGAAGATTGGTTCTCTCACCATTAAACCGACTG 1627
Query 1857 CTGGTACCACCTTTAACCCAACCCAACCCAAGCCTAAACCGACCCCATCTCTCGGCTCTG 1916
||||||||||||||||||| |||||| ||||| |||||||| ||||||||||| ||||||
Sbjct 1628 CTGGTACCACCTTTAACCCGACCCAAGCCAAGTCTAAACCGGCCCCATCTCTCAGCTCTG 1687
Query 1917 ACCACAAGTCAGACTCTTCTGAAGAGGTTACTGGGTCTCTGGCTGATGACATTGTCAGTG 1976
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1688 ATCACAAGTCAGACTCTTCTGAAGAGGTTACTGGGTCTCTGGCTGATGACATCCTCAGAG 1747
Query 1977 TAGGATCGTTGCCCATAAAAGTAAAGGGATCTAAAGAATT-ATCCTCGAAGATCGCAGCG 2035
||||||||||||||||||||||||||| |||| ||| || |||||||||||||| ||||
Sbjct 1748 TAGGATCGTTGCCCATAAAAGTAAAGGTATCTGCAGA-TTCATCCTCGAAGATCGTAGCG 1806
Query 2036 GTGGGTACAAGTCCTCTCTCAACTCAAGATCAGTTCAGAAGTAA 2079
|| ||||||| || | ||||||||||||||||||||||||||||
Sbjct 1807 GTTGGTACAACTC-T-TCTCAACTCAAGATCAGTTCAGAAGTAA 1848
Score = 429 bits (232), Expect = 4e-119
Identities = 308/343 (90%), Gaps = 12/343 (3%)
Strand=Plus/Plus
Query 400 GGGTGGGCAAAATGAAAATGCTCCCTATATCTGCTATACACCAAGTTATGGATATGCACA 459
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 102 GGGTGGGCAAAATGAAAATTCTCCTTATATCTGCTATACACCAAGTTATGGATATGCACA 161
Query 460 GTCTCCCTACAATCCCTACAATCCTTACATACCAGGAGCTTCAATAGGCGTTGATTCTTC 519
||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 162 GTCTCTCTACAATCCCTACAATCCTTACATACCAGGCGCATCAATAGGCGTTGACTCTTC 221
Query 520 TTTTGTTGGATTCCAACAATATTACTCAGACCCTCCGTATGAAAGTGCTGCGTCTTCGCC 579
|||| ||||||||||||||||||||||| ||||||| ||||||| |||||| ||||| ||
Sbjct 222 TTTTCTTGGATTCCAACAATATTACTCAAACCCTCCCTATGAAAATGCTGCATCTTCACC 281
Query 580 TACTTATGTTCCATATGTTATTCAGCCTGATATGGTCTCGAATAGTTCAACAGACTCTTT 639
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TACTTATGCTCCATATGTTATTCAGCCTGATATGGTCTCGAATAGTTCAACAGACTCTTT 341
Query 640 GGTA------G-C---G--AATGGTGGTCAATCTGATGGAAGAGGATCCATGCAGAGAAA 687
|| | | | | |||||||||||||||||||||||||| |||| || |||||
Sbjct 342 GGCAACAACTGACTTAGCCAATGGTGGTCAATCTGATGGAAGAGGTTCCAAGCCGAGAAG 401
Query 688 TGGTTCAGCAATTGCCGGACTCCCAAAAGATGCTCCAAAGTCT 730
|| |||||||||||||| | | ||||||||||||||||| |||
Sbjct 402 TGCTTCAGCAATTGCCGTATTTCCAAAAGATGCTCCAAAATCT 444
> Ahg473949 jgi|Araly1|473949|fgenesh2_kg.1__3903__AT1G48110.2
Length=2803
Score = 769 bits (416), Expect = 0.0
Identities = 694/828 (84%), Gaps = 19/828 (2%)
Strand=Plus/Plus
Query 957 GTGAACAAAATCGAGGATCG-AGAACGAGAAG-ATCAAGAAATCAACTAATTGTCAAAGC 1014
|||||||||||||||| ||| ||| |||| || || |||||||||| ||||| || ||
Sbjct 1411 GTGAACAAAATCGAGG-TCGAAGATCGAG-AGCATTGGGAAATCAACTTATTGTTAAGGC 1468
Query 1015 ATATACAACCAAAGCTGGAAATGCTGATGCGGAAGGAAATATTGTGATAAATCCTGATCG 1074
|||||||| |||||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 1469 TTATACAACAAAAGCTGGAAATGCTGATGCCGAAGGAAATATTGTGATCAATCCTTCTC- 1527
Query 1075 A-TATAATAAAGAAGATTTCAGTATTGAATACAGCGATGCCAGGTTTTTTGTGATTAAGT 1133
| ||||||||||| ||| || | || || |||||| |||||| ||||||||||||||| |
Sbjct 1528 AGTATAATAAAGAGGATCTCCGAATCGATTACAGCAATGCCAAGTTTTTTGTGATTAAAT 1587
Query 1134 CGTATAGTGAAGATGATGTTCACAAGAGCATCAAATATGGTGTCTGGTCATCTACATTGA 1193
||||||||||||||||||||||||||||||||||||| ||| |||||||| || |||
Sbjct 1588 CGTATAGTGAAGATGATGTTCACAAGAGCATCAAATACAATGTTTGGTCATCAACTTTGC 1647
Query 1194 ATGGGAACAAGAAATTGCAGAGTGTATATGAAGATGCTCAGAGAATAGCCACTGAGAAGT 1253
|||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 1648 ATGGGAACAAAAAATTGCAGAGTGCGTATGAAGATGCTCAGAGAATAGCCGCCGAGAAGT 1707
Query 1254 CTCGTGAATGTCCTATTTTCTTATTCTTTTCTGTCAATTCCAGTGGTCTGTTCTGTGGCG 1313
|| ||||||| || || ||||| ||||||||||||||| |||||||| |||||||||||
Sbjct 1708 CTTGTGAATGCCCGATATTCTTGTTCTTTTCTGTCAATGCCAGTGGTTTGTTCTGTGGCA 1767
Query 1314 TGGCTGAGATGACCGGTCCAGTTTCCTTCGACCGAGACATGGATTTTTGGCAGCAAGACA 1373
||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1768 TGGCTGAGATGACTGGTCCAGTTTCTTTTGATAAAGACATGGATTTTTGGCAGCAAGACA 1827
Query 1374 AATGGAGTGGAAGCTTTCCTGTCAAGTGGCACATTATTAAAGATGTTCCTAATAGCTATT 1433
||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||
Sbjct 1828 AATGGAGTGGAAGCTTTCCCGTCAAATGGCACATCATAAAAGATGTTCCCAATAGCTATT 1887
Query 1434 TCAGGCACATTATTTTACATAATAACGAGAATAAGCCAGTGACCAACAGCCGAGACACAC 1493
|||||||||| || |||| ||||| || |||||||| || |||||||| ||||||||||
Sbjct 1888 TCAGGCACATCATACTACAGAATAATGAAAATAAGCCGGTCACCAACAGTCGAGACACAC 1947
Query 1494 AAGAGATAATACTGAAACAAGGACTCGAGGTGCTAAAACTATTCAAACATCATGCGGAAA 1553
|||||||||| ||||||||||| || || ||||||||| |||| ||| ||||| |||||
Sbjct 1948 AAGAGATAATGCTGAAACAAGGTCTGGAAGTGCTAAAAATATTTAAAGATCATATGGAAA 2007
Query 1554 AGACTTCACTATTAGATGATTTTATGTACTACGAA-GACCGCCAGAGACTCATGCAGGAA 1612
||||||| || ||||||||||| | || |||||| | ||| |||||| ||||||||||
Sbjct 2008 GGACTTCATTACTAGATGATTTTGTCTATTACGAAAG-CCGACAGAGAGTCATGCAGGAT 2066
Query 1613 GAGAGAGCTAGACTTCCATTTAGGACCTTTCGCAGGCCATTTCCCGTG-CTCA-ATCTAG 1670
|||||| | || || || | |||||||||| || || ||| || | | || | | ||
Sbjct 2067 GAGAGAACCAGGCTGCCGTACAGGACCTTTCTTAGCCC-TTTACCATTACCCAGACC-AG 2124
Query 1671 ATTTTTCTGACAGAAGCAAGAAAAGCTCCAAGGATGTCGTT-AAGA-AGCCTTCAGTGAC 1728
|| | ||||| |||| ||| |||| | || ||| | | || |||| | ||||||||||
Sbjct 2125 ATCTCTCTGATAGAAACAATAAAATCCCCTTGGAAGCC-TTCAAGAGA-CCTTCAGTGAG 2182
Query 1729 CTCTGCAGAAACAAAGGTTGTGCAGTTAAAAAACTCAGATGGGGATGA 1776
||||||| |||| |||| || | ||| ||| ||||||||| ||||
Sbjct 2183 CTCTGCAAAAACCAAGGAGGTTC-GTTCAAAG--TCAGATGGGAATGA 2227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90616692855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5