BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17340.2
Length=3499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929584 jgi|Araly1|929584|scaffold_302041.1 5365 0.0
Ahg904610 jgi|Araly1|904610|Al_scaffold_0003_1738 182 2e-44
> Ahg929584 jgi|Araly1|929584|scaffold_302041.1
Length=3318
Score = 5365 bits (2905), Expect = 0.0
Identities = 3186/3322 (96%), Gaps = 18/3322 (1%)
Strand=Plus/Plus
Query 67 aaaaaaaagaaaCGCAATGTTCGTCGGCGACGACGACTCAGTTCAGATTGTTCGGCTTCT 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 AAAAAAAAGAAACGCAATGTTCGTCGGCGACGACGACTCAGTTCAGATTGTTCGGCTTCT 66
Query 127 TGACCAGACGCTTACTTCTATTGATGGCGTTTCTGTCCGCGAGGCGACGGAGGCTCTGGA 186
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 67 TGACCAGACGCTTACTTCCATTGATGGCGTTGCAGTCCGCGAGGCGACGGAGGCTCTGGA 126
Query 187 TCTACTGTCTACGAAGCTCCCTCATTTCCCTTATCGTCTTCTCTCCATCGCTTCCGGAAG 246
|| ||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 127 TCGACTTTCTACGGAGCTCCCTCACTTCCCTTATCGTCTTCTCTCCCTCGCTTCCGGAGG 186
Query 247 TGAAAA-TCCAAGCCTGAAAGTTGCTGCTGCAACATATCTGAAGAATTTTACCAGAAAGA 305
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 187 AGAAAATTCC-AGCCTGAGAGTTGCTGCTGCAACATATCTGAAGAATTTTACCAGAAGGA 245
Query 306 GCACTGGCACTGAAGGGACAATCTCAGAAGTCAGCAAGGAGTTTAAGGATCAGCTCCTCC 365
| ||||| | |||||||| ||||||||||| ||||||||| |||||||||||||| ||||
Sbjct 246 GGACTGGGATTGAAGGGATAATCTCAGAAGCCAGCAAGGACTTTAAGGATCAGCTGCTCC 305
Query 366 TAGCTTTGCTTCAGGCAGAGCCTGCAGTTCTTAAAGTCTTACTTGAACTGCTGCACATTG 425
|||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 306 TAGCTTTGCTTCAGGCAGAGCCTGCACTTCTTAAAGTTTTACTTGAACTGCTCCACATTG 365
Query 426 TTGTTGTGTCAGAATTTGTTAGGAAAAATGCATGGCCTAAACTTGTACCGGAGCTGCGCT 485
|||| | ||||||| ||| | |||||||||||||||| |||||||||||||||| ||||
Sbjct 366 TTGTCATTTCAGAATATGTGAAGAAAAATGCATGGCCTGAACTTGTACCGGAGCTCCGCT 425
Query 486 CTGCTATCGAGAAGAGCAGTTTAATTAGCAGTTCAAACTCTAGCTGGAGTACTGTGAACG 545
||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||
Sbjct 426 CTGCTATCGAGAACAGTAGATTAATTAGCAGTTCAGACTCTAGCTGGAGTACTGTGAACG 485
Query 546 CTCTGATGGTATTGCTTACAGTTGTAAAGCCTTTTCAGTACTTCCTGCAACCAAAACTTG 605
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CTCTGATGGTATTGCTTACCGTTGTAAAGCCTTTTCAGTACTTCCTGCAACCAAAACTTG 545
Query 606 CAAAGGAGCCAGTGCCACAACAGCTGGAGAGTATCGCGAGAGAAATTCTAGTACCCTTGG 665
||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 546 CAAAGGAGCCAGTACCACAACAGCTAGAGAGTATCACGAAAGAAATTCTAGTACCCTTGG 605
Query 666 TGTCAGTATTACATCGTCTCATTGACAAGGCTTTGACTACCCATGGATGGGATGAACTGG 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TGTCAGTATTACATCGTCTCATTGACAAGGCTTTGACTACCCATGGATGGGATGAACTGG 665
Query 726 AATTGGAAAAGACACTCCACATTATTTGCAAATGCCTATACTTTTCAGTGAAGTCCCATA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 666 AATTGGAAAAGACACTCCACATTATTTGCAAATGCCTATACTTTTCAGTGAAGTCTCATA 725
Query 786 TGCCATCTGCTTTGTCACCTCTGCTCGGTTCCTTCTGTCAAGATATGATCAGAATTCTGG 845
||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 726 TGCCATCTGCTTTGTCACCTCTGCTCGATTCCTTCTGTCGAGATATGATCCGAATTCTGG 785
Query 846 ACTCCTTGAGTTTTGACTGGAGTGTAACTCCTTCTGATGGGTACTTGATAAGATCGAAAG 905
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 786 ACTCCTTGAGTTTTGACTGGAGTGTAACTCCTTCTGATGGGTACTTGATAAGGTCGAAAG 845
Query 906 CTGGAAAAAGAAGTTTGCTCCTCTTTTGCACGCTTGTCAGCCGACATAGAAAATACTCTG 965
|||||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||
Sbjct 846 CTGGAAAAAGAAGTTTGCTCCTCTTTGGCACACTCGTCAGCAGACATAGAAAATACTCTG 905
Query 966 ATAAATTGGTGCCGGAAATAATAAACTGCTCAATGAAGATTGTCAAACATAGCTCAAACA 1025
| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 906 ACAAATTGGTGCCGGAGATAGTAAACTGCTCAATGAAGATTGTCAAACATAGCTCAAACA 965
Query 1026 TCGGTAAGCTCGGATGCCTAACTGAGAGAATTATATCACTTGCTTTTGACGTAATTTCAC 1085
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 966 TCAGTAAGCTCGGATGCCTAACTGAGAGAATTATATCACTTGCTTTTGATGTAATTTCAC 1025
Query 1086 GCGTCATGGAAATTGGCCCTGGATGGAGATTACTTTCACCCCATTTTTCCTTTTTGTTGG 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GCGTCATGGAAATTGGCCCTGGATGGAGATTACTTTCACCCCATTTTTCCTTTTTGTTGG 1085
Query 1146 ACTCCGCAATCTTTCCAGCCCTGGTGCTTAATGAGAGGGACATCTCTGAGTGGGAGGAAG 1205
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1086 ACTTCGCAATCTTTCCAGCCCTGGTGCTTAATGAGAGGGACATCTCTGAGTGGGAAGAAG 1145
Query 1206 ATGCAGATGAATTCATAAGGAAAAACCTTCCATCTGAACTAGAAGAAATTTCTGGGTGGA 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 ATGCAGATGAATTCATAAGGAAAAACCTTCCATCTGAACTAGAAGAAATTTCTGGGTGGA 1205
Query 1266 GGGATGACTTGTTTACAGCCAGGAAAAGCGCTATGAACTTACTTTGTGTCCTTGCCATGT 1325
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1206 GGGATGACTTGTTTACAGCCAGGAAAAGCGCTATGAACTTACTTGGTGTCCTTGCCATGT 1265
Query 1326 CAAAGGGACCACCAGTATCTACTACAAATACAGCTTCCCCAGCAGCATGTAAGCGGAAGA 1385
|||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 1266 CAAAGGGACCACCAGTATCTACTACAAATAAAGCTTCCTCAGCATCATGTAAGCGGAAGA 1325
Query 1386 AAGGTGAAAAGAACAGAGGAAATAACCAAAGATGCATGGGTGATCTACTGGTGCTTCCAT 1445
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1326 AAGGTGAAAAGAACAGAGGAAATAACCAAAGATGCATGGGAGATCTACTGGTGCTTCCAT 1385
Query 1446 TTTTGTCAAAATTTCCTGTGCCTTCGAAGAGTTACAAACTGGATGCTAGTACTTCAGCAG 1505
|||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1386 TTTTGTCAAAATTTTATGTGCCTTCTAAGAGTAACAAACTGGATGCTAGTACTTCAGCAG 1445
Query 1506 CCTATTTCGGTGTCCTAATGGCATATGGTAGCCTGCAAGAGTTTATCCAAGAACAAAATC 1565
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1446 CCTATTTCGGTGTCCTAATGGCATATGGTAGCCTGGAAGAGTTTATCCAAGAACAAAATC 1505
Query 1566 CTGAGTATGTGGCATCTTTTGTCCGTACCCGTGTGCTACCCATTTATTCTACACCTGATT 1625
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1506 CTGAGTATGTGGCATCTTTTGTCCGTACCCGTGTGCTACCGATTTATTCTACACCTGATT 1565
Query 1626 GCTCACCTTACTTGGTTGCATCTGCAAATTGGGTACTTGGAGAGCTTGCGTCTTGCCTAC 1685
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1566 GCTCACCTTACTTGGTTGCATCTGCAAACTGGGTACTTGGAGAGCTTGCGTCTTGCCTAC 1625
Query 1686 CTGAGGAGATGAATGCAGATGTTTTTTCTTCCCTACTAAAGGCATTAGCAATGCCAGATC 1745
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1626 CTGAGGAAATGAATGCAGATGTTTTTTCTTCCCTGCTGAAGGCATTAGCAATGCCAGATC 1685
Query 1746 AGGTGGAGATTTCTTGTTACCCAGTGCGTTTTTCAGCTGCTGGTGGAATAGGTTCCCTAC 1805
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1686 AGGTGGAGATTTCTTGTTACCCAGTGCGTTTTTCAGCTGCTGGTGGAATAGGTTCACTGC 1745
Query 1806 TCGAAAATGAGTACCAACCACCTGAATTGTTGCCGCTTCTTCAGTTTATTACTGGTAAGA 1865
||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 1746 TCGAAAATGAGTACCAACCACCTGAATGGTTGCCGTTTCTTCAGATTATTACTGGTAAGA 1805
Query 1866 TTGGTAATGAGGAAGACGAGGACAGCATGTTGTTTCAGCTTCTCAAATCCGTGGTCGAGT 1925
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1806 TTGGTAATGAGGAAGACGAGGATAGCATGTTGTTTCAGCTTCTCAAATCCGTGGTCGAGT 1865
Query 1926 CGGGAAATCAAGATATTGCAATGCATATTCCTTACATTGTCTCTTCTCTAGTAAGTAATA 1985
||||||||||||||||||| | ||||||||| |||||||||||||| ||||| |||||||
Sbjct 1866 CGGGAAATCAAGATATTGCCACGCATATTCCGTACATTGTCTCTTCGCTAGTTAGTAATA 1925
Query 1986 TGTTGAAGTTTATGCATCCAAGTGAAGATCCATGGTCTCAGGCTATTCTAGGTGGCCTTG 2045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 TGTTGAAGTTTATGCATCCAAGTGAAGATCCATGGTCTCAGGCTATTCTAGGTGGCCTTG 1985
Query 2046 AGACATTAGCAGCGATGACTCAGACTTATGAAAGCTCTAAGCCTGAAGCGGATGAGGAGA 2105
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 AGACATTAGTAGCGATGGCTCAGACTTATGAAAGCTCTAAGCCTGAAGCGGATGAGGAGA 2045
Query 2106 ATAATCAGGCGACTGAAATATGGCTAACTGGTCAAGGCACCATCAGCAAAGCTTTGTCAG 2165
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2046 ATAATCAGGCGACTGAAATATGGCTAACTGGTCAATGCACCATCAGCAAAGCTTTGTCAG 2105
Query 2166 CACTTTTACAGCATGCATGGCTGGCAACAGATGTGCCTCCGACTTCATGCATAGATCATT 2225
||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 2106 CACTTTTACAGCACGCATGGCTGGCAACAGATGTTCCTCCGACTTCAAGCATAGATCATT 2165
Query 2226 TGTCGACGATGTTGCGGTTCATTGTGATTGC-TGCTACTAATTGCAATGTATTTGTGGAG 2284
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2166 TGTCGACGATGTTGCGGTTCATTGTGATTGCCTGC-ACTAATTGCAATGTATTTGTGGAG 2224
Query 2285 CTCAGATTAACTGATTTACTCATAGTTTGGGCCGATATTCTTGCTAGTTGGAATGGTTGG 2344
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2225 CTCAGATTAAGTGAATTACTCATAGTTTGGGCCGATATTCTTGCTAGTTGGAATGGTTGG 2284
Query 2345 GAAGAGTCGGAGGACTTATCAGTTTTTGACTGTATAGAAGAAGTTGTGGGTATAAACAAT 2404
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2285 GAAGAGTCGGAGGACTTATCGGTTTTTGACTGTATAGAAGAAGTTGTGGGTATAAACAAC 2344
Query 2405 AAATATGGTTTTAGGAGTTTCCTTTTCAGAGATATACCATCCCCTCCAGCCATGCCAGTC 2464
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2345 AAATATGGTTTTAGGAGTTTCCTTTTCAGAGATATGCCATCCCCTCCAGCCATGCCAGTC 2404
Query 2465 CGTCCACGATCTGTTGTAGAATCCATTGGTTCATTTGTCAGCAAAGCCATACTTGAGTAT 2524
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2405 CGTCCGCGATCTGTTGTTGAATCCATTGGTTCATTTGTCAGCAAAGCCATACTTGAGTAT 2464
Query 2525 CCGTCGGCCACAAGGAGGGCTTGTTCTTGTGTCCACACATTATTATATGTACCCGACTAC 2584
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2465 CCGTCGGCCACAAGGAGGGCTTGTTCTTGTGTCCACACATTATTATATGTACCCAACTAC 2524
Query 2585 TCATCTGACATCGAAGGGGTGGGGAAATCATTGGCGATGGTCTTCGCTGAATCAGCCTTT 2644
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2525 TCATCTGACGTCGAAGGGGTGGGGAAATCATTGGCGATGGTCTTCACTGAATCAGCCTTT 2584
Query 2645 TCTCATTTTTTAGCATTGCGTGAGAAACCTTGTACATTGTGGAGGCCTCTATTACTGGCA 2704
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2585 TCTCATTTTCTAGCATTGCGTGAGAAACCTTGTCCATTGTGGAGGCCTCTATTATTGGCA 2644
Query 2705 ATATCATCATGCTATATCTCCTATTCCGATATTGTGGAAGGCGTTTTAGAGAAAGTGATA 2764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2645 ATATCATCATGCTATATCTCCTATTCCGATATTGTGGAAGGCGTTTTAGAGAAAGTGATA 2704
Query 2765 TCTGGAGGTTTCGAGTTATGGGTATCTTCATTGGCTTTTTCATACTCGCTTACGTGTGAT 2824
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 2705 TCTGGAGGTTTCGAGTTATGGCTATCTTCATTGGCTTTTTCATACTCGCTTATGTGTGAT 2764
Query 2825 GACAGTCCATCAGTAGTATCGGAAACTAAAAGACCTCTTGTTTCAGTGATGACGCTAGTA 2884
| |||||||||||||||||||||| ||||| | | | | ||||||||| |||||
Sbjct 2765 GCCAGTCCATCAGTAGTATCGGAAG-TAAAA--C-TATA-T----GTGATGACGGTAGTA 2815
Query 2885 AAGGTGATCGAGCATCTTTTAGATGTAAGGCACGGGAATGCAACTGATGATTTGGCAAGG 2944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2816 AAGGTGATCGAGCATCTTTTAGATGTAAGGCACGGGAATGCAACTGATGATTTGGCAAGG 2875
Query 2945 AAGTGCTTTGTTTCATTGATGGAGGCTTCTCGAAGGCTAAAGGAAGTGAACGAAGAAACA 3004
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2876 AAGTGCTTTGTTTCATTGATGGAGGCTTCTCGGAGGCTAAAGGAAGTGAACGAAGAAACA 2935
Query 3005 GACGATGATGAAGATGATGGAGAACCTGGAGAAGAAGAGACAGAATCTGAAGAAACTGAT 3064
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2936 GACGATGATGAAGATGATGGAGAACCCGGAGAAGAAGAGACAGAATCTGAAGAAACTGAT 2995
Query 3065 TCAAATGACGAGGATTCCGAGAGCGATGA-G--TGTGAAGAAACGGAGGAAGAGTTTCTA 3121
|||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||
Sbjct 2996 TCAAATGACGAGGATTCCGAAAGCGATGACGAGTGTGAAGAAACGGAGGAAGAGTTTCTA 3055
Query 3122 GAAAGGTATGCCAAAGTTGCAGCAGAATTGGAGGATAGTGAAGTTATTGAAGAGGCGGAT 3181
||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3056 GAAAGGTATGCTAAAGCTGCAGCAGAATTGGAGGATAGTGAAGTAATTGAAGAGGCGGAT 3115
Query 3182 GAAGAAGATGATGACCATGAGATTGATTTGGGTTCTCTGAATGAAATCGATCCGCAGAAA 3241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3116 GAAGAAGATGATGACCATGAGATTGATTTGGGTTCTCTGAATGAAATCGATCCGCAGAAA 3175
Query 3242 CTGGTGTTATCATTAATGGAGAAGCATCACCAGAAAGTAATAAATCTCGTACCCTCTGAA 3301
||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 3176 CTGGTGTTAACATTAATGGAGAAGCATCACGAGAAAGTAATAAAACTCGTACCCTCTGAA 3235
Query 3302 GCTA-TCTCAACCTTTCTCAATTCTTTTCCTATATACACAAGTCTCTTCTCTAAGTGCCT 3360
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3236 G-TAATCTCAACCTTTCTCAATTCTTTTCCTGTATACACAAGTCTCTTCTCTAAGTGCCT 3294
Query 3361 CTAAACATTAAGCTACAGTTTT 3382
||||||||||| ||||||||||
Sbjct 3295 CTAAACATTAAACTACAGTTTT 3316
> Ahg904610 jgi|Araly1|904610|Al_scaffold_0003_1738
Length=1020
Score = 182 bits (98), Expect = 2e-44
Identities = 108/113 (96%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 583 GTACTTCCTGCAACCAAAACTTGCAAAGGAGCCAGTGCCACAACAGCTGGAGAGTATCGC 642
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 300 GTACTTCCTGCAACCAAAACTTGCAAAGGAGCCAGTACCACAACAGCTGGAGAGTATCAC 359
Query 643 GAGAGAAATTCTAGTACCCTTGGTGTCAGTATTACATCGTCTCATTGACAAGG 695
|| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 360 GAAAGAAATTCTAGTACCCTTGGTGTCAGTATTACATCGTCTCGTCGACAAGG 412
Score = 180 bits (97), Expect = 7e-44
Identities = 108/113 (96%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 773 GTGAAGTCCCATATGCCATCTGCTTTGTCACCTCTGCTCGGTTCCTTCTGTCAAGATATG 832
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 412 GTGAAGTCCCATATGCCATCTGCTTTGTCACCTCTGCTCGGTTCCTTCTGTCGAGATATG 471
Query 833 ATCAGAATTCTGGACTCCTTGAGTTTTGACTGGAGTGTAACTCCTTCTGATGG 885
||||||||||||||||||||||| |||||||||||||| | || |||||||||
Sbjct 472 ATCAGAATTCTGGACTCCTTGAGCTTTGACTGGAGTGTTATTC-TTCTGATGG 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132135893456
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5