BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17350.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341872 jgi|Araly1|341872|fgenesh1_pg.C_scaffold_3001635 1336 0.0
> Ahg341872 jgi|Araly1|341872|fgenesh1_pg.C_scaffold_3001635
Length=900
Score = 1336 bits (723), Expect = 0.0
Identities = 837/893 (94%), Gaps = 3/893 (0%)
Strand=Plus/Plus
Query 61 tcttcttcttcttctCCTTCCTCTACACAATCACAACCCTAACATTTCCGCCATTAACAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 TCTTCTTCTTCTTCTCCTTCCTCTACACAATCACAACCCTAACATTTCCGCCATTAACAA 70
Query 121 CCTCAGCAGCAACATCATGCCGAACATTATGCGGCAACATCCCAATAAACTACCCGTTCG 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 71 CGTCAGCAGCAACATCATGCCGAACATTATGCGGCAACATCCCAATAAACTACCCATTCG 130
Query 181 GCATCGACGGCGGTTGCGGATCTCCTCAATACAGAGGAATGTTCAATTGCTCCACCGATC 240
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 131 GCATCGACGGCGGTTGCGGATCTCCTCAGTTCAAAGGAATGTTCAATTGCTCCACCGATC 190
Query 241 TATATTTCACCACTCCTTCCGGCAGCTATAAGGTCCAAAGCATCGATTACGAGAAGAAAA 300
||| ||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||
Sbjct 191 TATTTTTCACCACTCCTTCTGGCAGTTACAAGGTCCAGAGCATCGATTACGAGAAGAAAA 250
Query 301 CAATGGTAATCTTCGATCCTGCTATGTCTACTTGCTCGATTCTTCAGCCTCACCACGATT 360
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 251 CTATGGTAATCTTCGATCCGGCGATGTCTACTTGCTCGATTCTTCAGCCTCACCACGATT 310
Query 361 TCAAAATGGCGGATATTCAAAACACTCTTATTAGACCTTCGTACGACACCGTTTTCGCAC 420
|||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 311 TCAAAATGGCTGATATCCAAAACGCTCTTATTAGACCTTCGTACGACACCGTTTTCGCAC 370
Query 421 TTTTCAACTGTTCCAACGATTCTCCTGTTCATAATCGTTACCGGAATCTATGTTTTAATG 480
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 371 TTTTCAACTGTTCCAACGACTCTCCTGTTCATAATCGTTACCGGAATCTCTGTTTTAATG 430
Query 481 CCGCCGGCCACTCTTGCGACGAGCTTTATAGCTCCTGTACTTCCTTTCGAATCTTCAACA 540
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 431 CCGCCGGCCACTCTTGCGACGAGCTTTATAGCTCTTGTACCTCCTTTCGAATCTTCAACA 490
Query 541 CCACTTCTCCCTATGGTAACAACAGTACGGTTCATACGACGCCGTATTGCTGTTTCACTA 600
| || ||||||| |||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 491 CTACCTCTCCCTCTGGTAATA---GTACGATTCATACGACGCCGTATTGCTGTTTCACTA 547
Query 601 ACTACGATACGGTGCGGGTGATGAGTATGAACATTTTGGATTGCTCACATTACACGACGG 660
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 548 GCTACGATACGGTGCGGGTGATGAGTATGAACATTTTGGATTGCTCGCATTACACGACGG 607
Query 661 TGATTGACAATGGAAAAATGAGAGGAGTGGGGCCTTTGGATTGGTCCTATGGAATCGAGC 720
||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||| ||||
Sbjct 608 TGATTGACAATGGGAAAATGAGAGGCGTGGCGCCTTTGGATTGGTCGTATGGAATTGAGC 667
Query 721 TTTCGTACTCGGTAACGGAGATTGGCTGTGACCGTTGCCGAAAGTCAGGTGGCACTTGTG 780
|||||| ||||| ||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 668 TTTCGTTCTCGGCGCCGGAGATTGGCTGTGACCGTTGCCGGAAGTCAGGTGGTACGTGTG 727
Query 781 GCTTTGACGCCGAGACGGAGATCTTTCTTTGCCAGTGTTCCGGTTCCAACAACAACCCTA 840
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 728 GTTTTGACGCCGAGACGGAGATCTTTCTTTGCCAATGTTCCGGTTCCAACAACAACCCTA 787
Query 841 CGAGAGAATGTGGTGGAGGTATGACTGATCGAGGAGGCTGCAGTTTTACAAACATAAATT 900
|||||||||||||||||||||||||| ||| ||||||||||| || || |||||||||||
Sbjct 788 CGAGAGAATGTGGTGGAGGTATGACTAATCAAGGAGGCTGCAATTCTATAAACATAAATT 847
Query 901 TTATAACGACTCTCTTGACTATGTTCATGTCTTTTATTTACACTGTTTTGTGA 953
|| ||| | ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 848 ATACAACCATTCTCTTGGTTATGTTCATGTCTTTTCTTTACACTGTTTTGTGA 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5