BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17365.2
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929590 jgi|Araly1|929590|scaffold_302047.1 592 2e-168
> Ahg929590 jgi|Araly1|929590|scaffold_302047.1
Length=760
Score = 592 bits (320), Expect = 2e-168
Identities = 348/362 (96%), Gaps = 0/362 (0%)
Strand=Plus/Plus
Query 103 ATGGCTACAGAGGCACCAACGCAATCTTACAGCGAGCAATGGTATTGGGACGATCGTTAC 162
|||||||||||| || | |||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 21 ATGGCTACAGAGACATCGACGCAATCTTACAGTGAGAAATGGTATTGGGACGAGCGTTAC 80
Query 163 AAGAATGAATCTGAACCGTTTGATTGGTACCAGAAGTATTCACCTTTAGCTCCTCTCATC 222
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 81 ACGAATGAATCTGAACCGTTTGATTGGTACCAGAAGTATTCATCTTTAGCTCCTCTCATT 140
Query 223 AATCTCTATGTTCCTCAACGTAATCAACGAGTCCTCGTCATTGGCTGTGGAAACTCAGCG 282
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 141 AATCTCTATGTTCCTCACCGTAATCAACGAGCCCTCGTCATTGGCTGTGGAAACTCAGCG 200
Query 283 TTTAGCGAAGGAATGGTGGATGATGGATACGAAGATGTAGTCAGTATTGATATATCATCA 342
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 201 TTTAGCGAAGGAATGGTGGATGATGGATATGAAGATGTAGTCAATATTGATATATCATCA 260
Query 343 GTGGTGATTGATACCATGATTAAGAAATACTCTGATCGTCCTCAGCTCAAATATTTGAAG 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GTGGTGATTGATACCATGATTAAGAAATACTCTGATCGTCCTCAGCTCAAATATTTGAAG 320
Query 403 ATGGATGTGCGTGATATGAAAGCATTTGAAGATGCTTCTTTTGATGCTGTTATCGATAAA 462
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 321 ATGGATGTGCGTGATATGAAGGCATTTGAAGATGCTTCTTTTGATGCTGTTATCGATAAA 380
Query 463 GG 464
||
Sbjct 381 GG 382
Score = 501 bits (271), Expect = 4e-141
Identities = 361/400 (90%), Gaps = 23/400 (6%)
Strand=Plus/Plus
Query 556 AGGAACCTTAGACTCCATTTTGGTGATGTGGGAGTAATTCGAGGCAATACTCAACACAAA 615
||||||||||||||| | ||| || |||||||| ||||| |||||||||||||||||||
Sbjct 380 AGGAACCTTAGACTCTA-TTT--TG-TGTGGGAGCAATTCCAGGCAATACTCAACACAAA 435
Query 616 TGCTTGAAGAGGTTTGGAGTTGATGAAACCTATAGGGTCCTCAAGGATAAAGGAGTCTAT 675
|||||||||||| | ||| | |||||||||||||||||||||||||||
Sbjct 436 TGCTTGAAGAGG--T----TTG--G--------AGGGTCCTCAAGGATAAAGGAGTCTAT 479
Query 676 ATCCTGATTACATATGGTGCTCCGATTTACCGTCTTCGCCTGTTTAAAGAATCATGCTCT 735
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 ATCCTGATTACATATGGAGCTCCGATTTACCGTCTTCGTCTGTTTAAAGAATCATGCTCT 539
Query 736 TGGACAACCAAACTCCATGTTATAGACAAAAGTTTAACCGATCAACCGTTAGACACCCCA 795
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 540 TGGACAACGAAACTCCATGTTATAGACAAAAGTTTAACTGATCAACCGTTAGAAACCCCA 599
Query 796 AAATGGGAACTGACAAAACCTCTTCCTCTAGATGCTGATGGAAGTTCAGTGGAATCTGCG 855
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 600 AAATGGGAACTGACAAAACCACTTCCTCTAGATGCTGAGGGAAGTTCAGTGGAATCTGCG 659
Query 856 ATAGGCAAAAACCCTGATGTCCATTACATCTACGTCTGTATTAAGGATGAGTC-TTCGAA 914
|||||||||| ||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 660 ATAGGCAAAAGCCCTGATGTCCATTACATCTATGTCTGCATTAAGGATGAGTCGTT-GAA 718
Query 915 GATGGAGGCAGATGCAGCATGAAGTCATGGGAACCTCTTT 954
|||||||||||| ||||||||| ||||||||||| ||||
Sbjct 719 GATGGAGGCAGACGCAGCATGACCTCATGGGAACC-CTTT 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40715275356
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5