BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17370.1
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479213 jgi|Araly1|479213|fgenesh2_kg.3__1914__AT3G17370.1 776 0.0
> Ahg479213 jgi|Araly1|479213|fgenesh2_kg.3__1914__AT3G17370.1
Length=657
Score = 776 bits (420), Expect = 0.0
Identities = 554/615 (90%), Gaps = 23/615 (4%)
Strand=Plus/Plus
Query 1 ATGTTTAAGGTCATGCGGGAGAGTAACATGGATATGGATACAGCTGGTTATAACATCATC 60
|||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct 1 ATGTTTAAGGTCATGCGGGAGAGTAATATGGATATGGATACTGCTGTTTATAACATCATC 60
Query 61 ATCCATGGACTGTGCAAGGCTGGTAAGTTTGACGAAGCAGGGAATATATTCACTAATCTC 120
||||||||| ||||||||| ||||||||| || |||||| ||||| |||||||||||||
Sbjct 61 ATCCATGGAATGTGCAAGGGTGGTAAGTTGGAGGAAGCATGGAATCTATTCACTAATCTG 120
Query 121 CTCATCAGTGGATTGCAACCTGATGTTCAAACTTACAATATGATGATCAGATTCAGCTCG 180
||| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 121 CTCCTCAGTGGTTTGCAACCTGATGTTAAAACTTACAATATGATGATTAGATTCAGCGCG 180
Query 181 TTAGGTAGGGCTGAAAAATTATATGCAGAGATGATCCGTAGAGGTCTAGTCCCCGATACT 240
||||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 181 TTAGGGAGGGCTGAAAAATTATATGCAGAGATGCTCCGTAGAGGTATAGTACCCGATACC 240
Query 241 ATAACCTATAACTCAATGATCCATGGACTCTGCAAGCAGAACAAACTAGCTC-AGGCGAG 299
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 241 ATCACCTATAACTCAATGATCCATGGACTCTGCAAGCAGAACAAACTAGC-CGAGGCAAG 299
Query 300 AAAGGT-----AT-CCA---A------GAGCTGCTCAACGTTTAATACACTCATTAATGG 344
|||||| || ||| | |||||||||||| ||||||||||||||||||||
Sbjct 300 AAAGGTGTTTGATTCCATGGATAACAAGAGCTGCTCAACTTTTAATACACTCATTAATGG 359
Query 345 TTACTGTAAAGCAACAAGGGTTAAAGATGGGAT-GAATCTTTTCTGCGAGATGTATCGAA 403
|||||||||||||| ||||||| | |||||||| || |||||||||||||||||||||||
Sbjct 360 TTACTGTAAAGCAAGAAGGGTTGATGATGGGATTGA-TCTTTTCTGCGAGATGTATCGAA 418
Query 404 GAGGAATAGTTGCTAATGTAATTACTTACACCACTTTGATTCATGGGTTTCGTCAAGTTG 463
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 GAGGAATAGTTGCTAATGTAATTACTTACACTACTTTGATTCATGGGTTTCGTCAAGTTG 478
Query 464 GTGATTTTAATACCGC-CTTAGACATTTTCCAGGAGATGGTTTCTAATGGTGTGTATTCT 522
|||||||||| ||||| || || ||||||||||||||||||||||| ||||||| ||||
Sbjct 479 GTGATTTTAAAACCGCTCT-AGGCATTTTCCAGGAGATGGTTTCTAGTGGTGTGCGTTCT 537
Query 523 AGTTCGATAACGTTCCGTGATATT-TTGCCACAGTTATGCAGTAGGAAGGAACTAAGAAA 581
||||||||||| ||||| |||||| || || |||||||||||| |||||| ||||||||
Sbjct 538 AGTTCGATAACTTTCCGCGATATTCTTCCCG-AGTTATGCAGTAAGAAGGAGCTAAGAAA 596
Query 582 GGCAGTGGCAATGCT 596
|||||||||||||||
Sbjct 597 GGCAGTGGCAATGCT 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23407471038
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5