BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17390.1
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479215 jgi|Araly1|479215|fgenesh2_kg.3__1916__AT3G17390.1 2569 0.0
Ahg934322 jgi|Araly1|934322|scaffold_402310.1 869 0.0
> Ahg479215 jgi|Araly1|479215|fgenesh2_kg.3__1916__AT3G17390.1
Length=1616
Score = 2569 bits (1391), Expect = 0.0
Identities = 1514/1572 (96%), Gaps = 14/1572 (1%)
Strand=Plus/Plus
Query 1 CTAGATCTCATTGTCTGAACACAGTTAGATGAAACTGGGAATGAATCTGGACGAAATTAC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CTAGATCTCATTGTCTGAACACAGTTAGATGAAACCGGGAATGAATCTGGACGAAATTAC 60
Query 61 GATCTT--A-CACCA---ACCCCCTCGACGAGCTCGTATATATAAAGCTTA-TACGCTCC 113
|||||| | ||||| |||||||||||||||||||||||||||||| || ||||||||
Sbjct 61 GATCTTACACCACCACCCACCCCCTCGACGAGCTCGTATATATAAAGC-TACTACGCTCC 119
Query 114 TCCTTCACCTTCGTACTACTACTACCACCACATTTCTTTAGCTCAACCTTCATTACTAAT 173
||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 120 TCCTTCACCTTCG---TACTACTACCATTACATTTCTTTAGCTCAACCTCCATTACTAAT 176
Query 174 CTCCTTTTAAGGTTTCTTTCGTGAATCAGATCGGAAAAATGGAATCTTTTTTGTTCACAT 233
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 177 CTCCTTTTAAGGTTTCTTTTTTGAATCGGATCGGAAAAATGGAATCTTTTTTGTTCACAT 236
Query 234 CTGAATCCGTCAACGAGGGACATCCCGACAAGCTTTGTGATCAGATCTCCGACGCTATCC 293
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 CTGAATCCGTCAACGAGGGACATCCCGACAAGCTCTGTGATCAGATCTCCGACGCTATCC 296
Query 294 TCGATGCTTGCCTTGAACAAGACCCTGAGAGCAAAGTTGCTTGTGAGACTTGTACCAAGA 353
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCGATGCTTGTCTTGAACAAGACCCTGAGAGCAAAGTTGCTTGTGAGACTTGTACCAAGA 356
Query 354 CTAACATGGTCATGGTTTTTGGAGAAATCACCACCAAGGCTAACGTTGATTACGAGCAGA 413
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 357 CTAACATGGTCATGGTTTTTGGAGAAATCACCACCAAGGCTAATGTTGATTACGAGCAGA 416
Query 414 TTGTTCGTAAAACATGCCGTGAGATTGGATTCGTCTCTGCTGACGTTGGTCTAGATGCTG 473
||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 417 TTGTTCGTAAAACGTGCCGTGATATTGGATTCGTATCTGCTGATGTTGGTCTAGATGCTG 476
Query 474 ACAATTGCAAGGTTCTGGTTAACATTGAGCAACAGAGTCCTGACATTGCACAAGGTGTTC 533
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ACAATTGTAAGGTTCTTGTTAACATTGAGCAACAGAGTCCTGACATTGCACAAGGTGTTC 536
Query 534 ATGGTCATCTCACCAAGAAGCCAGAGGAGGTTGGAGCTGGTGACCAAGGTCACATGTTTG 593
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 537 ATGGTCATCTCACCAAGAAGCCAGAGGAGGTCGGAGCTGGTGATCAAGGTCACATGTTTG 596
Query 594 GGTATGCTACTGATGAGACTCCTGAGCTCATGCCTCTTACTCACGTTCTCGCTACTAAGC 653
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 597 GGTATGCTACTGATGAGACTCCTGAGCTCATGCCGCTTACTCACGTTCTCGCTACTAAGC 656
Query 654 TTGGAGCTAAACTCACTGAAGTTCGCAAGAATGGAACTTGCCCTTGGTTGAGGCCAGATG 713
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 657 TTGGAGCTAAACTCACTGAAGTTCGCAAGAATGGAACTTGCCCGTGGTTGAGGCCTGACG 716
Query 714 GTAAGACTCAAGTCACTATTGAGTACATCAACGAAAGCGGAGCCATGGTTCCTGTACGTG 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GTAAGACTCAAGTCACTATTGAGTACATCAACGAAAGCGGAGCCATGGTTCCTGTACGTG 776
Query 774 TCCACACTGTTCTCATCTCAACACAGCATGACGAGACTGTGACTAACGATGAGATCGCAG 833
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 777 TCCACACTGTTCTCATCTCAACACAGCACGACGAGACTGTGACTAACGATGAGATCGCAG 836
Query 834 CTGATCTTAAGGAGCATGTGATCAAGCCAGTGATCCCAGAGAAATACCTTGATGAGAAAA 893
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 837 CTGATCTTAAGGAGCATGTGATCAAGCCAGTGATCCCAGAGAAGTACCTTGATGAGAAAA 896
Query 894 CCATCTTCCATCTCAACCCATCTGGTCGTTTTGTTATCGGAGGTCCTCATGGAGATGCAG 953
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 897 CCATCTTCCATCTCAACCCATCTGGTCGTTTTGTTATTGGAGGTCCTCATGGAGATGCAG 956
Query 954 GGCTTACCGGCCGTAAGATCATCATCGATACTTATGGTGGTTGGGGTGCACACGGAGGTG 1013
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 957 GGCTTACCGGCCGTAAGATCATCATCGATACTTACGGTGGTTGGGGTGCACATGGAGGTG 1016
Query 1014 GTGCTTTCTCTGGAAAGGACCCAACCAAGGTTGACAGGAGTGGGGCTTACATCGTTAGGC 1073
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTGCTTTCTCTGGGAAGGACCCAACCAAGGTTGACAGGAGTGGGGCTTACATCGTTAGGC 1076
Query 1074 AAGCAGCTAAGAGCATTGTAGCCAGTGGGCTAGCGAGGCGGGTCATTGTGCAAGTCTCGT 1133
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1077 AAGCAGCTAAGAGCATTGTAGCCAGTGGGCTTGCGAGGCGGGTCATTGTGCAAGTCTCCT 1136
Query 1134 ATGCCATTGGTGTCCCTGAGCCATTGTCTGTGTTCGTGGACAGTTATGGAACAGGAAAGA 1193
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1137 ATGCCATTGGTGTCCCTGAGCCATTGTCTGTGTTTGTGGACAGTTATGGAACCGGAAAGA 1196
Query 1194 TACCAGACAAGGAGATTCTTGAGATTGTGAAGGAGAGTTTTGATTTCAGGCCAGGTATGA 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TACCAGACAAGGAGATTCTTGAGATTGTGAAGGAGAGTTTTGATTTCAGGCCAGGTATGA 1256
Query 1254 TCTCCATTAACTTGGATCTGAAGAGAGGAGGTAATGGTAGGTTCTTGAAGACTGCTGCCT 1313
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 1257 TCTCCATTAACTTGGATTTGAAGAGAGGAGGTAATGGTAGGTTCTTGAAGACTGCAGCTT 1316
Query 1314 ATGGTCACTTTGGAAGGGACGATGCTGATTTCACCTGGGAGGTAGTCAAGCCACTCAAGT 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATGGTCACTTTGGAAGGGACGATGCTGATTTCACCTGGGAGGTAGTCAAGCCACTCAAGT 1376
Query 1374 CTAACAAGGTCCAAGCTTGAAACCTGTCAGCCTCTGTTTCACTTCTGTCCAGAATCAGTC 1433
||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct 1377 CTAACAAGGTCCAAGCTTGAAACCTGTTAGCCTCTGTTTCACTTGTGTTCAGAATCAGTC 1436
Query 1434 TTGTTCTCTGTATTTTAGGCTCTTTCTGCC-TCTTTAGTTTCAACTCTGAGATGGGTTTA 1492
||||||||||||||||| ||||||| || | |||||||||||||||||||||||||||
Sbjct 1437 TTGTTCTCTGTATTTTAAGCTCTTTGTGGGGTTTTTAGTTTCAACTCTGAGATGGGTTTA 1496
Query 1493 TTCATTTTGTTTTCAACTTTGAAGAAAAAAGCTAAGCAGCTGGGAATTTATATAATTATT 1552
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1497 TTCATTTTGTTTTCAACTTTGAAGAAAAAAGCTAAGCAGTTGGG--TTTATATAATTATT 1554
Query 1553 TATATGGTATTC 1564
||||||||||||
Sbjct 1555 TATATGGTATTC 1566
> Ahg934322 jgi|Araly1|934322|scaffold_402310.1
Length=1289
Score = 869 bits (470), Expect = 0.0
Identities = 951/1182 (80%), Gaps = 38/1182 (3%)
Strand=Plus/Plus
Query 210 AAATGGAATCTTTTTTGTTCACATCTGAATCCGTCAACGAGGGACATCCC-GACAAGCTT 268
|||||||| | || | || || |||||||||||||| |||||||| ||| |||||||||
Sbjct 21 AAATGGAAACCTTCCTATTTACCTCTGAATCCGTCAATGAGGGACA-CCCAGACAAGCTT 79
Query 269 TGTGATCAGATCTCCGACGCTATCCTCGATGCTTGCCTT-GAACAAGACCCTGAGAGCAA 327
||||| ||| | || || || |||||||||||||| ||| || ||||||||||| |||||
Sbjct 80 TGTGACCAGGTTTCTGATGCGATCCTCGATGCTTG-CTTAGAGCAAGACCCTGAAAGCAA 138
Query 328 AGTTGCTTGTGAGACTTGTACCAAGACTAACATGGTCATGGTTTTTGGAGAAATCACCAC 387
||| || |||||||| || |||||||| |||||||| ||||| ||||| || ||||| ||
Sbjct 139 AGTGGCGTGTGAGACATGCACCAAGACCAACATGGTGATGGTGTTTGGTGAGATCACTAC 198
Query 388 CAAGGCTAACGTTGATTACGAGCAGATTGTTCGTA-AAACATGCCGTGAGATTGGATTCG 446
| || || || || || ||| |||||||| | | || ||| | |||||||| ||
Sbjct 199 CTCTGCGAAAGTGGACTATGAGAAGATTGTTAG-ATCCACTTGCAGGGAGATTGGGTTTA 257
Query 447 TCTCTGCTGACGTTGGTCTAGATGCTGACAATTGCAAGGTTCTGGTTAACATTGAGCAAC 506
|||| || || |||||||| || |||||||| ||||| ||| ||||||||||||||||||
Sbjct 258 TCTCGGCCGATGTTGGTCTTGACGCTGACAAATGCAATGTTTTGGTTAACATTGAGCAAC 317
Query 507 AGAGTCCTGACATTGCACAAGGTGTTCATGGTCATCTCACCAAGAAGCCAGAGGAGGTTG 566
|||||||||| ||||| || ||||||||||||||| | ||||||||||| || || |||
Sbjct 318 AGAGTCCTGATATTGCTCAGGGTGTTCATGGTCATTTGACCAAGAAGCCTGAAGATATTG 377
Query 567 GAGCTGGTGACCAAGGTCACATGTTTGGGTATGCTACTGATGAGACTCCTGAGCTCATGC 626
| |||||||| || || || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 378 GTGCTGGTGATCAGGGACATATGTTTGGGTATGCTACTGATGAGACTCCTGAGCTTATGC 437
Query 627 CTCTT-ACTCACGTTCTCGCTACTAAGCTTGGAGCTAAACTCACTGAAGTTCGCAAGAAT 685
| ||| |||||||| || ||||| |||||||| ||||| ||||||||||| | |||||
Sbjct 438 C-CTTGACTCACGTCCTAGCTACCAAGCTTGGTGCTAAGCTCACTGAAGTGAGGAAGAAC 496
Query 686 G-GAACTTGCCCTTGGTTGAGGCCAGATGGTAAGACTCAAGTCACTATTG-AGTACATCA 743
|| ||||||| ||||||||||| ||||||||||| || ||||| | || |||||| |
Sbjct 497 AAGA-CTTGCCCATGGTTGAGGCCTGATGGTAAGACCCAGGTCAC-AGTGGAGTACAAGA 554
Query 744 ACGAAAGCGGAGCCATGGTTCCTG-T-ACGTGTCCACACTGTTCTCATCTCAACACAGCA 801
|||| | ||||| ||| |||| | | | | |||||||| || ||||||||||| || ||
Sbjct 555 ACGATGGTGGAGCTATGATTCC-GATTA-GAGTCCACACGGTGCTCATCTCAACTCAACA 612
Query 802 TGACGAGACTGTGACTAACGATGAGATCGCAGCTGATCTT-AAGGAGCATGTGATCAAGC 860
|||||| ||||| || ||||| ||||| || ||||| ||| |||||||||||||||||||
Sbjct 613 TGACGAAACTGTCACCAACGACGAGATTGCTGCTGA-CTTGAAGGAGCATGTGATCAAGC 671
Query 861 CAGTGATCCCAGAGAAATACCTTGATGAGAAAACCATCTTCCATCTC-AACCCATCTGGT 919
| || ||||| | || |||||||| || || |||||||| || || ||||||||||||
Sbjct 672 CGGTTATCCCTGCTAAGTACCTTGACGATAACACCATCTTTCA-CTTGAACCCATCTGGT 730
Query 920 CGTTTTGTTATCGGAGGTCCTCATGGAGATGCAGGGCTTACCGGCCGTAAGATCATCATC 979
|||||||| |||||||| |||||||| ||||| || ||||| || | |||||||||||
Sbjct 731 CGTTTTGTCATCGGAGGGCCTCATGGTGATGCTGGACTTACTGGGAGGAAGATCATCATT 790
Query 980 GATACTTATGGTGGTTGGGGTGCACACGGAGGTGGTGCTTTCTCTGGAAAGGACCCAACC 1039
|| |||||||||||||||||||| || || || ||||| ||||| |||||||||||||||
Sbjct 791 GACACTTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGGAAAGGACCCAACC 850
Query 1040 AAGGTTGACAGGAGTGGGGCTTACATCGTTAGGCAAGCAGCTAAGAGCATTGTAGCCAGT 1099
||||||||||| ||||| || || ||||| ||||| || || ||||| | ||||| ||
Sbjct 851 AAGGTTGACAGAAGTGGTGCCTATATCGTGAGGCAGGCTGCAAAGAGTGTGGTAGC-AGC 909
Query 1100 -GGGCTAGCGAGGCGG--GTCATTGTGCAAGTCTCGTATGCCATTGGTGTCCCTGAGCCA 1156
||||| || | || | || || ||||| || || || ||||||||||||||||||||
Sbjct 910 AGGGCTCGC-ACGCCGCTGT-ATCGTGCAGGTATCATACGCCATTGGTGTCCCTGAGCCG 967
Query 1157 TTGTCTGTGTTCGTGGACAGTTATG-GAACAGGAAAGATACCAGACAAGGAGATTCTTGA 1215
| || ||||| || |||| || || | ||| || ||||||||||| || ||||
Sbjct 968 CTCTCAGTGTTTGTTGACACCTACAAGACCGGGACC-ATCCCAGACAAGGATATCCTTGT 1026
Query 1216 GATTG-TGAAGGAGAGT-TTTGATTTCAGGCCAGGTATGATCTCCATTAAC-TTGGATCT 1272
| ||| | ||||| || ||||| |||||||| || ||||| |||||||| ||| | ||
Sbjct 1027 G-TTGATCAAGGA-AGCATTTGACTTCAGGCCGGGAATGATGGCCATTAACCTTG-ACCT 1083
Query 1273 GAAGAGAGGAGGTAA-TGGTAGGTTCTTGAAGACTGCTGCCTATGGTCACTTT-GGAAGG 1330
|||||| |||||||| | |||||| ||| || ||||| ||||| || ||| || |
Sbjct 1084 GAAGAGGGGAGGTAACTTC-AGGTTCCAGAAAACCGCTGCGTATGGCCA-TTTCGGGCGT 1141
Query 1331 GACGATGCTGATTTCACCTGGGAGGTAGTCAAGCCACTCAAG 1372
|| || |||| ||||| |||||||| |||||||| ||||||
Sbjct 1142 GATGACCCTGACTTCACTTGGGAGGTCGTCAAGCCGCTCAAG 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63382167680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5