BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17400.1
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479216 jgi|Araly1|479216|fgenesh2_kg.3__1917__AT3G17400.1 616 7e-176
Ahg904726 jgi|Araly1|904726|Al_scaffold_0003_1854 420 6e-117
Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461 202 2e-51
Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001 117 9e-26
Ahg924802 jgi|Araly1|924802|scaffold_200363.1 67.6 9e-11
> Ahg479216 jgi|Araly1|479216|fgenesh2_kg.3__1917__AT3G17400.1
Length=1119
Score = 616 bits (333), Expect = 7e-176
Identities = 394/424 (93%), Gaps = 2/424 (0%)
Strand=Plus/Plus
Query 1 ATGATGACATTGTCCGATCTTCCAAGTGATTTGGCAGAGGAGGTTCTGTCTAAGATTCCG 60
|||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 ATGACGACAATGTCCGATCTTCCAAGTGATTTGGCAGAGGAGGTTCTGTCTAGGCTTCCG 60
Query 61 GTGACATCTCTGAGAGGGGTCAGAGCTACTTGCAAAAAGTGGAACACTTTATCCAAAGAT 120
||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct 61 GTGACATCTCTGAGAGGATTCCGATCTGCTTGCAAAAAGTGGAACACTTTATCCAAAGAT 120
Query 121 CGGAGCTTTACAAGGAAACACCTTGCTCAAGCCAAAGCAGCGGCAGCAAGGGAGTTTATG 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CGGAGCTTTACAAGGAAACACCTTGCTCAAGCAAAAGCAGCGGCAGCAAGGGAGTTTATG 180
Query 181 GTGGTCATGGTGATGGATTTTCAGGTTTATTTGATGGGCATCAATCTCCATAAGGACGTT 240
||||||||||| ||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 181 GTGGTCATGGTTATGGATTCTCAGGTTTATTTGATGGGCATCAATCTCTGCAAGGGCGTT 240
Query 241 GACGCAACTATAAACGGTCAAGGTAAACTTATTAGCTTAGACGATTCCAATCAAGTCGAT 300
|||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GACGAAACTATAAACCGTCAAGGTAAACTTATTAGCCTAGACGATTCCAATCAAGTCGAT 300
Query 301 ATATCTT-ACGTCTATCACTGCGACAGTTTAGTCTTATGCATCCCAAAAGACTGCGCTAG 359
|||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 301 ATATCTAGA-GTCTATCACTGTGATGGTTTAGTCTTATGCATCCCAAAAGACTGCTCTAG 359
Query 360 GCTTGTTGTTTGGAATCCGTATTGGGGCCAAACCTTATGGTTCAAGCCCACTAGTCTTCG 419
||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 360 GCTCGTTGTTTGGAATCCGTATTGGGGCCAAACCTTGTGGTTCAAGCCCAGTAGTCTTCG 419
Query 420 CCAT 423
|||
Sbjct 420 TCAT 423
> Ahg904726 jgi|Araly1|904726|Al_scaffold_0003_1854
Length=1182
Score = 420 bits (227), Expect = 6e-117
Identities = 392/469 (84%), Gaps = 21/469 (4%)
Strand=Plus/Plus
Query 11 TGTCCGATCTTCCAAGTGATTTGGCAGAGGAGGTTCTGTCTAAGATTCCGGTGACATCTC 70
|||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||
Sbjct 5 TGTCCGATCTTCCAAGTGATTTGGCAGAGGAGGTGCTGTCTAGGCTTCCAGTGACATCTC 64
Query 71 TGAGAGGGGTCAGAGCTACTTGCAAAAAGTGGAACACTTTATCCAAAGATCGGAGCTTTA 130
| |||||| || ||||| |||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 65 TAAGAGGGTTCCGAGCTGCTTGCAAAAAATGGAACACTTTGTCCAAAGAGCGGAGCTTTA 124
Query 131 CAAGGAAACACCTTGCTCAAGCCAAAGCAGCGGCAGCAAGGGAGTTTATGGTGGTCATGG 190
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 125 CAAGGAAACACCTTGCTCAAGCAAAAGCAGCGGCAGCAAGGGAGTTTATGGTGGTCATGG 184
Query 191 TGATGGATTTTCAGGTTTATTTGATGGGCATCAATCTCCAT--A----A-G-GA-CGTTG 241
||||| ||| || |||||||||||||||||||||||||||| | | | || |||||
Sbjct 185 TGATGAATTCTCGGGTTTATTTGATGGGCATCAATCTCCATGGAGTTCACGAGAGCGTTG 244
Query 242 ACGCAACTATAAACGGTCAAGGTAAACTTATTAGCTTAGACGATTCCA-ATCAAGTCGAT 300
|| || |||||||| ||| |||||||| ||||| || ||||||| | ||| ||||||
Sbjct 245 ACCCATCTATAAACCATCAGGGTAAACTCGTTAGCCTAAACGATTC-AGATCGGGTCGAT 303
Query 301 ATATCTT-ACGTCTATCACTGCGACAGTTTAGTCTTATGCATCCC-AAAAGACTGCGCTA 358
|||||| | || |||||||||||| ||||| | ||||||||| | |||| ||| | |||
Sbjct 304 ATATCTAGA-GTATATCACTGCGACGGTTTACTGTTATGCATCGCGAAAA-ACTACTCTA 361
Query 359 GGCTT-GTTGTTTGGAATCCGTATTGGGGCCAAACCTTATGGTTCAAGCCCACTAGTCTT 417
|| || || |||||||||||||| | | || |||| || ||| |||| |||| ||||
Sbjct 362 GG-TTCGTGGTTTGGAATCCGTACTCGTGCAAAACTTTGTGGCTCAAACCCAGAAGTCCC 420
Query 418 CGCCATT--TTCCGCACTGGTATATGTATGCTATTGGATACCAGATGCG 464
| || | || | ||||||||| |||||||| |||||| ||| |||
Sbjct 421 CACCCTAGATTG-G-ACTGGTATACATATGCTATAGGATACGAGAAGCG 467
> Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461
Length=1110
Score = 202 bits (109), Expect = 2e-51
Identities = 309/401 (77%), Gaps = 31/401 (8%)
Strand=Plus/Plus
Query 13 TCCGATCTTCCAAGTGATTTGGCAGAGGAGGTTCTGTCTAAGATTCCGGTGACATCTCTG 72
||| ||||||| || |||||||| |||||||| || | |||||||||| |||||||||||
Sbjct 13 TCCAATCTTCCTAGAGATTTGGCGGAGGAGGTGCTCTGTAAGATTCCGTTGACATCTCTG 72
Query 73 AGAGGGGTCAGAGCTACTTGCAAAAAGTGGAACACTTTATCCAAAGATCG-GAGCTTTAC 131
|| || || | |||||||||||||||||||||||||||||| || | ||| ||| |
Sbjct 73 CGAACTATCCGATCCACTTGCAAAAAGTGGAACACTTTATCCAAATAT-GAGAGTTTTGC 131
Query 132 AAGGAAACACCTTGCT---CAAGCCAAAGCAGCGGCA-GC-AAGG-GAGTTTATGGTGGT 185
|| ||| |||||| | ||||| |||| ||| | | | || | ||||||||||||||
Sbjct 132 AAAGAAGTACCTTGGTGATCAAGCAAAAGTAGCAGAAAGGGAAAGAGAGTTTATGGTGGT 191
Query 186 CATGGTGATGGATTTTCAGG-TTTATTTGATGGGCA-TCAATCTCCATAAGGACGTTGAC 243
|||| ||||| ||||| ||| ||||||||||| | | | ||||| || || | |||||
Sbjct 192 CATGATGATGAATTTT-AGGGTTTATTTGATGAG-AGTTAATCTTCAAAACAATGTTGAA 249
Query 244 GCAAC-T--ATAAA-CGGTCAAGGTAAACTTATTAGCTTAGACGATTCCAATCAAGTCGA 299
|| | | ||||| || | ||| | ||||||||||||||| | | | | |||| ||
Sbjct 250 TCATCATGTATAAAGCG-TGAAGCTGAACTTATTAGCTTAG--G-TG--A-TGAAGTTGA 302
Query 300 TATATCTTACGTCTATCACTGCGACAGTTTAGTCTTATGCATC--C--CA--AAAGACT- 352
||||||| | |||| |||||| ||| ||||| | ||||||||| | || ||||||
Sbjct 303 TATATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCAGCATCACCAAAGACAA 362
Query 353 GCGCTAGGCTTGTTGTTTGGAATCCGTATTGGGGCCAAACC 393
| ||||||| || |||||||| ||||||||||| || |||
Sbjct 363 GA-CTAGGCTCGTGGTTTGGAACCCGTATTGGGGACATACC 402
> Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001
Length=1047
Score = 117 bits (63), Expect = 9e-26
Identities = 97/113 (86%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 11 TGTCCGATCTTCCAAGTGATTTGGCAGA-GGAGGTTCTGTCTAAG-ATTCCGGTGACATC 68
||||| |||||||||| |||||||| || ||||| || ||| || |||||| |||||||
Sbjct 11 TGTCCAATCTTCCAAGGGATTTGGC-GATAGAGGTGCTCTCT-AGAATTCCGTTGACATC 68
Query 69 TCTGAGAGGGGTCAGAGCTACTTGCAAAAAGTGGAACACTTTATCCAAAGATC 121
||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 69 TCTGAGAATAATCGGATCTACTTGCAAAAAGTGGAACACTTTATCCAAAGATC 121
> Ahg924802 jgi|Araly1|924802|scaffold_200363.1
Length=1196
Score = 67.6 bits (36), Expect = 9e-11
Identities = 58/68 (85%), Gaps = 4/68 (6%)
Strand=Plus/Plus
Query 56 TTCCGGTGACATCTCTGAGAGGGGTCA-GAGCTACTTGCAAAAAGTGGAACACTTTATCC 114
||||| ||||||||||||||| | | | |||||||||||||||||||||||||||||
Sbjct 1065 TTCCGATGACATCTCTGAGAGCAAT-ACGTTCTACTTGCAAAAAGTGGAACACTTTATCC 1123
Query 115 -AAAGATC 121
||| |||
Sbjct 1124 CAAA-ATC 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20375084526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5