BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17410.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479217 jgi|Araly1|479217|fgenesh2_kg.3__1918__AT3G17410.1 2233 0.0
Ahg913850 jgi|Araly1|913850|Al_scaffold_0001_4104 1096 0.0
Ahg483882 jgi|Araly1|483882|fgenesh2_kg.4__2942__AT2G47060.2 488 4e-137
Ahg324657 jgi|Araly1|324657|fgenesh1_pm.C_scaffold_5002201 479 3e-134
> Ahg479217 jgi|Araly1|479217|fgenesh2_kg.3__1918__AT3G17410.1
Length=1424
Score = 2233 bits (1209), Expect = 0.0
Identities = 1364/1437 (95%), Gaps = 17/1437 (1%)
Strand=Plus/Plus
Query 1 AAAAGTCTGCGTTTCTTCACCAACCCTACACGAACC-A-AGATAGATAGAAACCTTCTCC 58
||||||||||||||||||||||||||||| |||||| | ||||||| ||||||| | | |
Sbjct 1 AAAAGTCTGCGTTTCTTCACCAACCCTACTCGAACCAAGAGATAGA-AGAAACC-T-T-C 56
Query 59 TTCTTCTGCTTCTTTTATCATCGGAGAATTCGAATCTTCTTTTCCTCTTTTTGAGATTCT 118
|||| || ||||| ||||||||||||||||| |||| ||| || ||||||||||||
Sbjct 57 TTCTGCT--TTCTTCCATCATCGGAGAATTCGACTCTT-GTTT-ATC-TTTTGAGATTCT 111
Query 119 CTAATTATC-CTTTTGGAAGAGTTTCGTGTGAGAGAGAAGCGTAATGGGCTGCTTTGGTT 177
|||||| || |||||||| ||||||||||| |||||||||||||| |||| ||||| |
Sbjct 112 CTAATTCTCGTTTTTGGAAAAGTTTCGTGTGTTAGAGAAGCGTAATGAGCTGTTTTGGCT 171
Query 178 GTTGTGGTGGTGGTGAGGATTTCCGTAGAGTTTCTGAAACTGGACCAAAGCCAGTGCATA 237
| | | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 172 G-T-T-GTGGTGGTGAGGATTTCCGTAGAGTTGCTGAAACTGGACCAAAGCCTGTGCATA 228
Query 238 ACACTGGAGGTTACAATGGAGGTCACCATCAAAGGGCAGATCCACCCAAAAACCTTCCAG 297
|||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 229 ACACAGGAGGTTACAATGGAGGTCATCATCAAAGGGCAGATCCTCCCAAGAACCTTCCAG 288
Query 298 TCATTCAGATGCAGCCTATCTCTGTTGCGGCCATTCCAGCTGATGAATTGAGGGATATAA 357
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TTATTCAGATGCAGCCTATCTCTGTTGCGGCCATTCCAGCTGATGAATTGAGGGATATAA 348
Query 358 CGGATAACTATGGTTCAAAGTCCTTGATTGGTGAGGGTTCATATGGAAGAGTCTTTTATG 417
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 349 CGGATAACTATGGTGGAAAGTCCTTGATTGGTGAGGGTTCATATGGAAGAGTGTTTTATG 408
Query 418 GTATTCTTAAAAGTGGTAAAGCAGCTGCCATTAAGAAACTGGATTCTAGTAAGCAACCAG 477
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GTATTCTTAAAAATGGTAAGGCAGCTGCCATTAAGAAACTGGATTCTAGTAAGCAACCAG 468
Query 478 ATCAAGAATTTCTCGCCCAGGTATCAATGGTTTCGAGATTGCGACAAGAAAATGTTGTTG 537
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 469 ATCAAGAATTTCTTGCCCAGGTATCAATGGTTTCGAGATTGCGACAAGACAATGTTGTTG 528
Query 538 CGCTTCTGGGCTATTGTGTTGATGGCCCACTCCGTGTTCTTGCTTATGAATATGCTCCTA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CGCTTCTGGGCTATTGTGTTGATGGCCCACTCCGTGTTCTTGCTTATGAATATGCTCCTA 588
Query 598 ATGGATCTCTTCATGATATTCTTCATGGTCGAAAAGGTGTTAAAGGGGCACAGCCAGGTC 657
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 589 ATGGATCTCTTCATGATATTCTTCATGGTCGAAAAGGTGTTAAAGGAGCACAGCCAGGTC 648
Query 658 CTGTTCTGTCGTGGCACCAGAGAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CTGTTCTGTCGTGGCACCAGAGAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGT 708
Query 718 ACTTGCATGAGAAGGCAAACCCTCATGTTATCCACAGAGACATCAAATCCAGCAATGTAC 777
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 ACTTGCATGAGAAGGCGAACCCTCATGTTATCCACAGAGACATCAAATCCAGCAATGTAC 768
Query 778 TTCTGTTCGATGATGATGTTGCCAAGATTGCTGATTTTGATTTGTCCAACCAAGCCCCTG 837
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 769 TTCTGTTCGACGATGATGTTGCCAAGATTGCTGATTTTGATCTGTCCAACCAAGCCCCTG 828
Query 838 ACATGGCTGCTCGCCTTCACTCAACCCGTGTGCTCGGAACCTTTGGCTATCACGCTCCAG 897
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 ACATGGCTGCGCGCCTTCACTCAACCCGTGTGCTCGGAACCTTTGGCTATCACGCTCCAG 888
Query 898 AGTATGCAATGACGGGGACGTTGAGCACAAAGAGTGATGTCTATAGTTTTGGCGTTGTTC 957
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 889 AGTATGCAATGACGGGGACGTTGAGCACAAAGAGTGATGTTTATAGTTTTGGCGTTGTTC 948
Query 958 TGCTGGAGCTCCTCACAGGTCGTAAACCAGTTGATCATACCTTACCACGTGGACAGCAGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TGCTGGAGCTCCTCACAGGTCGTAAACCAGTTGATCATACCTTACCACGTGGACAGCAGA 1008
Query 1018 GTGTCGTGACATGGGCAACCCCTAAATTGAGTGAAGACAAGGTGAAGCAGTGTGTTGACG 1077
|| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1009 GTCTTGTGACATGGGCAACCCCTAAACTGAGTGAAGACAAGGTGAAGCAGTGTGTTGACG 1068
Query 1078 CAAGACTAAACGGAGAATATCCTCCCAAAGCTGTTGCTAAGCTGGCTGCGGTAGCTGCAC 1137
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1069 CAAGACTAAACGGAGAATATCCTCCCAAAGCTGTTGCTAAGCTAGCTGCGGTTGCTGCAC 1128
Query 1138 TGTGTGTGCAATATGAGGCAGACTTCAGGCCTAACATGAGCATAGTGGTGAAGGCTCTTC 1197
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1129 TGTGTGTGCAATATGAGGCAGACTTCAGGCCAAACATGAGCATAGTGGTGAAGGCTCTTC 1188
Query 1198 AGCCGTTGCTCAATCCTCCTCGTTCTGCTCCCCAGACTCCACACAGGAACCCGTATTGAT 1257
|||| ||||||||||||||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 1189 AGCCATTGCTCAATCCTCCTCGCTCTGCTCCTCAGACACCGCACAGGAACCCGTATTGAT 1248
Query 1258 ATGCTCTAGTCTGATATCACCCTTTATGATCATCACTATTTCATTTGTTTTTGTTTGAAT 1317
|||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1249 ATGCTCCAGCCTGATTTCACCCTTTATGATGATCACTATTTCATTTGTTTTTGTTTGAAT 1308
Query 1318 CCGATTTGTGTAAATTTGTGAAATAGGCGTTTATT-CTCTCATAAACCCCCTGCCACTTC 1376
|||||||||||||||||||||||||||| |||||| |||||||||| ||| |||||||||
Sbjct 1309 CCGATTTGTGTAAATTTGTGAAATAGGCTTTTATTTCTCTCATAAAACCC-TGCCACTTC 1367
Query 1377 ACTGAAAATCTTACTTGGAAAGACCTGAATGTTACTGTATTTCTATATTATTTCATG 1433
|| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||
Sbjct 1368 ACCGAAAATCTTACTTGAAAAGACCTGAATGTTACTCTATTTTTATATTATTTCATG 1424
> Ahg913850 jgi|Araly1|913850|Al_scaffold_0001_4104
Length=2058
Score = 1096 bits (593), Expect = 0.0
Identities = 888/1031 (86%), Gaps = 17/1031 (2%)
Strand=Plus/Plus
Query 162 ATGGGCTGCTTTGGTTGTTGTGGTGGTG-GTGAGGATTTCCGTAGAGTTTCTGAAACTGG 220
||| |||| |||||||| || |||| | |||||||||| || || | | |||| |||||
Sbjct 1 ATGAGCTGTTTTGGTTG--GT-GTGG-GAGTGAGGATTTTCGCAGCGCTGCTGACACTGG 56
Query 221 ACCAAAG-CCAGTGCATAACACTGGAGGTTACAATGGAGGTCACCATCAAAGGGCAGATC 279
|| ||| |||| ||||||| | | ||||||||||||||| ||| ||||||| || ||||
Sbjct 57 TCC-AAGACCAGCGCATAACCCAGCAGGTTACAATGGAGGCCACTATCAAAGAGCTGATC 115
Query 280 CACCCAAAAACCTTCCAGTCATTCAGATGCAGCCTATCTCTGTTGCGGCCATTCCAGCT- 338
|||||| |||| ||||| |||| ||||||||||| ||||| | |||||||||| |
Sbjct 116 CACCCATGAACCAGCCAGTTATTCCCATGCAGCCTATTTCTGTACCAGCCATTCCAG-TG 174
Query 339 GATGAATTGAGGGATATAACGGATAACTATGGTTCAAAGTCCTTGATTGGTGAGGGTTCA 398
||||| ||||| |||||||| |||||||||||||||||| ||||||| ||||| ||||||
Sbjct 175 GATGAGTTGAGAGATATAACCGATAACTATGGTTCAAAGACCTTGATCGGTGAAGGTTCA 234
Query 399 TATGGAAGAGTCTTTTATGGTATTCTTAAAAGTGGTAAAGCAGCTGCCATTAAGAAACTG 458
||||||||||| ||||| ||| |||||| ||| ||| |||||||| || ||||||||
Sbjct 235 TATGGAAGAGTGTTTTACGGTGTTCTTAGAAGCGGTGGGGCAGCTGCTATCAAGAAACTT 294
Query 459 GATTCTAGTAAGCAACCAGATCAAGAATTTCTCGCCCAGGTATCAATGGTTTCGAGATTG 518
|| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 295 GACTCTAGTAAGCAGCCAGATCAAGAATTTCTTTCCCAGATATCAATGGTTTCGAGATTG 354
Query 519 CGACAAGAAAATGTTGTTGCGCTTCTGGGCTATTGTGTTGATGGCCCACTCCGTGTTCTT 578
||||| || |||||| ||| ||| | || ||||||||||||||||| ||||||||||||
Sbjct 355 CGACACGACAATGTTACTGCACTTATCGGTTATTGTGTTGATGGCCCTCTCCGTGTTCTT 414
Query 579 GCTTATGAATATGCTCCTAATGGATCTCTTCATGATATTCTTCATGGTC-GAAAAGGTGT 637
|||||||||| ||||||||| |||||||||||||||| ||||||||| | ||||||||
Sbjct 415 GCTTATGAATTTGCTCCTAAAGGATCTCTTCATGATACTCTTCATGG-CAAAAAAGGTGC 473
Query 638 TAAAGGGGCACAGCCAGGTCCTGTTCTGTCGTGGCACCAGAGAGTCAAAATTGCTGTTGG 697
||||| |||| | |||||||||| || ||||||| |||||||| ||||| ||||||||
Sbjct 474 CAAAGGAGCACTGAGAGGTCCTGTTATGACGTGGCAACAGAGAGTTAAAATCGCTGTTGG 533
Query 698 TGCGGCTAGAGGACTCGAGTACTTGCATGAGAAGGCAAACCCTCATGTTATCCACAGAGA 757
||| || |||||||| ||||||||||||||||||| | |||||| ||||||||| ||||
Sbjct 534 TGCAGCCAGAGGACTTGAGTACTTGCATGAGAAGGTGAGCCCTCAGGTTATCCACCGAGA 593
Query 758 CATCAAATCCAGCAATGTACT-TCTGTTCGATGATGATGTTGCCAAGATTGCTGATTTTG 816
||||||||||||||| ||||| | |||| ||||||||||||||||| |||| ||||||||
Sbjct 594 CATCAAATCCAGCAACGTACTAT-TGTTTGATGATGATGTTGCCAAAATTGGTGATTTTG 652
Query 817 ATTTGTCCAACCAAGCCCCTGACATGGCTGCTCGCCTTCACTCAACCCGTGTGCTCGGAA 876
|| |||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 653 ATCTGTCTGATCAAGCCCCTGACATGGCTGCTCGCCTTCACTCAACTCGTGTGCTAGGAA 712
Query 877 CCTTTGGCTATCACGCTCCAGAGTATGCAATGACGGGGACGTTGAGCACAAAGAGTGATG 936
|||||||||||||||||||||| ||||||||||| || ||||||||| ||||||| ||||
Sbjct 713 CCTTTGGCTATCACGCTCCAGAATATGCAATGACAGGAACGTTGAGCTCAAAGAGCGATG 772
Query 937 TCTATAGTTTTGGCGTTGTTCTGCTGGAGCTCCTCACAGGTCGTAAACCAGTTGATCATA 996
| || |||||||| |||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 773 TATACAGTTTTGGTGTTGTTCTGCTGGAGCTCCTTACGGGTCGTAAACCAGTGGATCATA 832
Query 997 CCTTACCACGTGGACAGCAGAGTGTCGTGACATGGGCAACCCCTAAATTGAGTGAAGACA 1056
||||||| |||||||| || ||| | ||||||||||||||||||||| | ||||||||||
Sbjct 833 CCTTACCGCGTGGACAACAAAGTCTAGTGACATGGGCAACCCCTAAACTAAGTGAAGACA 892
Query 1057 AGGTGAAGC-AGTGTGTTGACGCAAGACTAAACGGAGAATATCCTCCCAAAGCTGTTG-C 1114
| ||||||| | || ||||| ||||||||| |||||| || |||||||||||||||| |
Sbjct 893 AAGTGAAGCTA-TGCGTTGATGCAAGACTACTCGGAGAGTACCCTCCCAAAGCTGTTGGC 951
Query 1115 TAAGCTGGCTGCGGTAGCTGCACTGTGTGTGCAATATGAGGCAGACTTCAGGCCTAACAT 1174
||||| |||||||| |||||||| |||||||||||||||||| | || || || |||||
Sbjct 952 -AAGCTAGCTGCGGTGGCTGCACTCTGTGTGCAATATGAGGCAAATTTTAGACCAAACAT 1010
Query 1175 GAGCATAGTGG 1185
|||||| ||||
Sbjct 1011 GAGCATTGTGG 1021
Score = 767 bits (415), Expect = 0.0
Identities = 822/1015 (81%), Gaps = 42/1015 (4%)
Strand=Plus/Plus
Query 254 TGGAGGTCACCATCAAAGGGCAGATCCACCCAAAAACCTTCCAGTCATTCAGATGCAGCC 313
|||||| ||||||||||| |||||| || ||| |||| ||||| ||||| ||||||||
Sbjct 1044 TGGAGGCCACCATCAAAGAGCAGATTCATCCATGAACCAGCCAGTAATTCACATGCAGCC 1103
Query 314 TATCT-CTGTTGCGGCCATTCCAGCT-GATGAATTGAGGGATATAACGGATAACTATGGT 371
||| | |||| |||||||||||| | |||||||||| |||||||| ||||||| | ||
Sbjct 1104 TAT-TGCTGTACCGGCCATTCCAG-TGGATGAATTGAAAGATATAACCGATAACTTTAGT 1161
Query 372 TCA-AAGTCCTTGATTGGTGAGGGTTCATATGGA-AGAGTCTTTTATGGTATTCTTAAAA 429
||| | || || || ||||||||||||||| || | | | ||||| ||| |||||||||
Sbjct 1162 TCAGAGGT-ATTAATCGGTGAGGGTTCATAT-GACAAATTGTTTTACGGTGTTCTTAAAA 1219
Query 430 GTGGTAAAGCAGCTGCCATTAAGAAACTGGATTCTAGTAAGCAACCAGATCAAGAATTTC 489
| ||||||| ||||||||| |||||||| | ||| |||||| |||||||||||||||
Sbjct 1220 GCGGTAAAGAAGCTGCCATCAAGAAACTTTACCCTACTAAGCATTCAGATCAAGAATTTC 1279
Query 490 TCGCCCAGGTATCAATGGTTTCGAGATTGCGACAAGAAAATGTTGTTGCGCTTCTGGGCT 549
| ||||||||||||||||||| ||| ||| ||| || ||||||||||| ||| | || |
Sbjct 1280 TTTCCCAGGTATCAATGGTTTCAAGAGTGCAACACGAGAATGTTGTTGCACTTATCGGTT 1339
Query 550 ATTGTGTTGATGGCCCACTCCGTGTTCTTGCTTATGAATATGCTCCTAATGGATCTCTTC 609
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1340 ATTGTGTTGATGGCCCTCTCCGTGTTCTTGCTTATGAATATGCTCCTAAAGGGTCTCTTC 1399
Query 610 ATGATATTCTTCATGGTCGAAAA-GGTGTTAAAGGGGCAC-AGCCAGGTCCTGTTCTGTC 667
||||| ||||||| |||| |||| ||||| | ||| |||| | | |||||||||| || |
Sbjct 1400 ATGATGTTCTTCACGGTC-AAAATGGTGTCACAGGAGCACTA-CAAGGTCCTGTTTTGAC 1457
Query 668 GTGGCACCAGAGAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGTACTTGCATGA 727
|||||| || ||||||||||| |||||||||| || |||||||| |||||||||||| |
Sbjct 1458 GTGGCAACAAAGAGTCAAAATCGCTGTTGGTGTAGCCAGAGGACTTGAGTACTTGCATAA 1517
Query 728 GAAGGCAAACCCTCATGTTATCCACAGAGACATCAAATCCAGCAATGTACTTCTGTTCGA 787
||| | |||||||| ||||||||| |||| |||| ||||||||| |||||||||| ||
Sbjct 1518 GAAAGTGAACCCTCAGGTTATCCACCGAGAGATCAGATCCAGCAACATACTTCTGTTTGA 1577
Query 788 TGATGATGTTGCCAAGATTGCTGA-TTTTGATTTGTC----CAAC--CAAGCCCCTGACA 840
||||||||||||||| |||| ||| |||| || ||| ||| ||| |||||||||
Sbjct 1578 TGATGATGTTGCCAAAATTGGTGAATTTT-ATCTGTATTATCAATATCAATCCCCTGACA 1636
Query 841 TGGCTGCTCGCCTTCACTCAACCCGTGTGC-TCG---GA-ACC----TT--TGGCTAT-C 888
||||||||||| |||| | || || || ||| | || || | || | |
Sbjct 1637 TGGCTGCTCGCGTTCATTTAAGTTGTCTGGATCGTCTGCTACTAAGATTACTTCCTTTTC 1696
Query 889 AC-GCTCCAGAGTATG-CAATGACGGGGACGTTGAGCACAAAGAGTGATGTCTATAGTTT 946
|| | |||||| | | ||| ||| || | |||| ||||||||| |||||||| | |||
Sbjct 1697 ACTG-TCCAGAAT-TCACAAAGACAGGAATATTGACCACAAAGAGCGATGTCTACACTTT 1754
Query 947 TGGCGTTGTTCTGCTGGAGCTCCTCACAGGTCGTAAACCAGTT-GATCATACCTTACCAC 1005
||||||||||||| |||| ||||| || || ||||||||| || |||||||||||||| |
Sbjct 1755 TGGCGTTGTTCTGTTGGAACTCCTTACGGGCCGTAAACCA-TTCGATCATACCTTACCGC 1813
Query 1006 GTGGACAGCAGAGTGTCGTGACATGGGCAACCCCTAAATTGAGTGAAGACAAGGTGAAGC 1065
||||||| || || | ||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 1814 GTGGACAACAAAGACTAGTGACATGGGCAACCCCTAAACTAAGTGAAGACAAAGTGAAGC 1873
Query 1066 AGTGTGTTGACGCAAGACTAAACGGAGAATATCCTCCCAAAGCTGTTGCTAAGCTGGCTG 1125
| || ||||| ||||||||| |||||| || |||| |||||||||||| ||||| || |
Sbjct 1874 AATGCGTTGATGCAAGACTACTCGGAGAGTACCCTCTCAAAGCTGTTGCCAAGCTAGCCG 1933
Query 1126 CGGTAGCTGCACTGTGTGTGCAATATGAGGCAGACTTCAGGCCTA-ACATGAGCATAGTG 1184
|||| |||||||| |||||||| ||||| |||| || || || | |||||||||| ||
Sbjct 1934 CGGTGGCTGCACTCTGTGTGCAGTATGATCCAGATTTTAGACC-AGACATGAGCATTCTG 1992
Query 1185 GTGAAGGCTCTTCAGCCG-TTGCTCAATCCTCCTCGTTCTGCTCCCCAGACTCCA 1238
|||||| | ||||| || || | || |||||| ||||| |||| |||||||||
Sbjct 1993 GTGAAGACACTTCAACCTCTTT-TAAACCCTCCTTGTTCTTCTCCTCAGACTCCA 2046
> Ahg483882 jgi|Araly1|483882|fgenesh2_kg.4__2942__AT2G47060.2
Length=1278
Score = 488 bits (264), Expect = 4e-137
Identities = 621/791 (79%), Gaps = 34/791 (4%)
Strand=Plus/Plus
Query 442 CTGCCATTAAGAAA-CTGGATTCTAGTAAGCAACCAGATCA-AGAATTTCTCGCCCAGGT 499
|||| ||||| ||| ||||||||| || || || || || ||||| || ||||||||
Sbjct 325 CTGCGATTAA-AAAGTTGGATTCTAACAAACAGCCTGA-CACTGAATTCCTTGCCCAGGT 382
Query 500 ATCAATGGTTTCGA-GATTGCGACAAGA-AAATGTTGTTGC-GCTTCTGGGCTATTGTGT 556
|| |||||||| | | || ||| || || | ||||| | ||||| ||||| |||||
Sbjct 383 TTCCATGGTTTCTAGGCTT-AAACATGATAACT-TTGTT-CAACTTCTTGGCTACTGTGT 439
Query 557 TGATGGCCCACTC-CGTG-TTCTTG-CTTATGAATATGCTC-CTAATGGATCTCTTCATG 612
||| || | || || | | |||| ||| ||||| ||| | ||||||||||||||||
Sbjct 440 TGACGG-GAATTCACG-GATACTTGCCTT-TGAATTTGC-CAAAAATGGATCTCTTCATG 495
Query 613 ATATTCTTCATGGTCGAAAAGGTGTTAAAGGGGCACAGCCAGGTCCTGTTCT-GTCGTGG 671
||||||||||||| |||||||||| ||||| ||||||||||||||||| || |||||||
Sbjct 496 ATATTCTTCATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCTGT-CTTGTCGTGG 554
Query 672 CACCAGA-GAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGTACTTGCATGAGAA 730
| || | |||| |||||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct 555 TATCA-ACGAGTGAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTACTTGCATGAAAA 613
Query 731 GGCAAACCCTCATGTTATCCACAGAGACATCAAATCCAGCAATGTACTTCTGTTCGATGA 790
|| || ||||| | || ||| | |||||||||||||||||||| || || || || ||
Sbjct 614 AGCTAATCCTCACATCATTCACCGTGACATCAAATCCAGCAATGTCCTACTCTTTGAAGA 673
Query 791 TGATGTTGCCAAGATTGCTGATTTTGATTTGTCCAACCAAGCCCCTGACATGGCTGCTCG 850
||||||||||| |||||||| |||||| | || || ||||| ||||| ||||| |||||
Sbjct 674 CGATGTTGCCAAAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGATATGGCAGCTCG 733
Query 851 CCTTCACTCAACCCGTGTGCTCGGAACCTTT-GGCTATCACGCTCCAGAGTATGCAATGA 909
|||||| || |||||||| || ||||| ||| || || || || || || ||||||||||
Sbjct 734 CCTTCATTCCACCCGTGTTCTTGGAAC-TTTCGGTTACCATGCCCCTGAATATGCAATGA 792
Query 910 CGGGG-ACGTTGA--GCACAAAGAGTGATGTCTATAGTTTTGGCGTTGTTCTG-CTGGAG 965
| ||| | ||| | || ||| |||||||||||| || ||||| ||||| || || ||
Sbjct 793 CCGGGCA-GTTAAATGC-CAA-GAGTGATGTCTACAGCTTTGGAGTTGT-CTTACTCGAA 848
Query 966 CTCCTCACAGGTCGTAAACCAGTTGATCATACCTTACC-ACGTGGACAGCAGAGTGTCGT 1024
|| || |||||||| ||||| |||||||||| ||||| | | || ||||| ||| | ||
Sbjct 849 CTTCTTACAGGTCGAAAACCTGTTGATCATAGATTACCCA-GAGGCCAGCAAAGTTTAGT 907
Query 1025 GACATGGGCAACCCCTAAATTGAGTGAAGACAAGGTGAAGCAGTGTGTTGACGCAAGACT 1084
|||||||| || |||||| |||| ||||||||||| || || || ||||| ||||||||
Sbjct 908 CACATGGGCTACACCTAAACTGAGCGAAGACAAGGTTAAACAATGCGTTGATGCAAGACT 967
Query 1085 AAACGGAGAATATCCTCCCAAAGCTGTTGCTAAGCTGGCTGCGGTAGCTGCACTGTGTGT 1144
|| || || ||||| ||||||||||| ||| | || ||||| ||||| |||||||
Sbjct 968 CGGTGGGGATTACCCTCCAAAAGCTGTTGCCAAGTTAGCCGCGGTTGCTGCGTTGTGTGT 1027
Query 1145 GCAATATGAGGCAGACTTCAGGCCTAACATGAGCATAGTGGTGAAGGCTCTTCAGCCGTT 1204
||||||||| ||||| || ||||| || ||||| || || || || |||||||| || ||
Sbjct 1028 GCAATATGAAGCAGATTTTAGGCCGAATATGAGTATCGTTGTCAAAGCTCTTCAACCTTT 1087
Query 1205 GCTCAATCCTC 1215
| | ||| |||
Sbjct 1088 GTTGAATGCTC 1098
> Ahg324657 jgi|Araly1|324657|fgenesh1_pm.C_scaffold_5002201
Length=1086
Score = 479 bits (259), Expect = 3e-134
Identities = 608/774 (79%), Gaps = 34/774 (4%)
Strand=Plus/Plus
Query 459 GATTCTAGTAAGCAACCAGATCAAGAATTTCTCGCCCAGGTATCAATGGTTTCGAGATTG 518
||||||| || || || ||| | |||||||| |||||||| || ||||||||||| |||
Sbjct 298 GATTCTAACAAACAGCCTGATGAGGAATTTCTTGCCCAGGTTTCCATGGTTTCGAGGTTG 357
Query 519 CGA-CA-AGAAAATGTTGTTGCGCTTCTGGGCTATTGTGTTGATGGCCCACTC-CGTG-T 574
| || | || | |||||| ||| || || || | ||||||||| | || || | |
Sbjct 358 -AAGCATACTAACT-TTGTTGAGCTGCTTGGTTACTCTGTTGATGG-GAATTCGCG-GAT 413
Query 575 TCTTG-CTTATGAATATGCTCC-TAATGGATCTCTTCATGATATTCTTCATGGTCGAAAA 632
|||| ||| ||| | ||| || ||||||||||||||||||||||||||||| |||||
Sbjct 414 ACTTGTCTT-TGAGTTTGC-CCAAAATGGATCTCTTCATGATATTCTTCATGGGAGAAAA 471
Query 633 GGTGTTAAAGGG-GCACAGCCAGGTCCTGTTCT-GTCGTGGCACCAGA-GAGTCAAAATT 689
||||| || ||| ||| |||| ||||| | || ||||||||| || | |||| || |||
Sbjct 472 GGTGTGAA-GGGAGCAAAGCCTGGTCCACT-CTTGTCGTGGCATCA-ACGAGTGAAGATT 528
Query 690 GCTGTTGGTGCGGCTAGAGGACTCGAGTACTTGCATGAGAAGGCAAACCCTCATGTTATC 749
|| ||||| || || ||||| || |||||||| ||||| ||||| || || ||||| |||
Sbjct 529 GCGGTTGGAGCAGCAAGAGGGCTTGAGTACTTACATGAAAAGGCGAATCCACATGTCATC 588
Query 750 CACAGAGACATCAAA-TCCAGCAATGTACT--TCTGTTCGATGATGATGTTGCCAAGATT 806
||| | ||||| ||| |||||||| || || ||| || ||| ||||||| || || |||
Sbjct 589 CACCGTGACAT-AAAGTCCAGCAACGTTCTAATCT-TT-GATAATGATGTAGCTAAAATT 645
Query 807 GCTGATTTTGATTTGTCCAACCAAGCCCCTGACATGGCTGCTCGCCTTCACTCAACCCGT 866
||||| |||||| |||| || ||||| ||||| ||||| || |||||||| ||||| |||
Sbjct 646 GCTGACTTTGATCTGTCAAATCAAGCTCCTGATATGGCAGCACGCCTTCATTCAACTCGT 705
Query 867 GTGCTCGGAACCTTTGGCTATCACGCTCCAGAGTATGCAATGACGGGG-A-CGTTGAGCA 924
|| || ||||||||||| || || || || || ||||||||||| ||| | | | |||
Sbjct 706 GTTCTTGGAACCTTTGGTTACCATGCCCCTGAATATGCAATGACTGGGCAAC-T-GAGTG 763
Query 925 CAAAGAGTGATGTCTATAGTTTTGGCGTTGTTCTGCTGGAGCTCCTCACAGGTCGTAAA- 983
| ||||||||||| || ||||| || ||||| ||||| ||||| || |||||||| |||
Sbjct 764 CCAAGAGTGATGTATACAGTTTCGGAGTTGTACTGCTCGAGCTTCTTACAGGTCG-AAAG 822
Query 984 CCAGTTGATCATACCTTACCACGTGGACAGCAGAGTGTCGTGACATGGGCAACCCCTAAA 1043
|| ||||||||||| || || || || ||||| ||| | || |||||||| || || |||
Sbjct 823 CCTGTTGATCATACATTGCCTCGAGGCCAGCAAAGTCTAGTCACATGGGCTACACC-AAA 881
Query 1044 T-TGAGTGAAGACAAGGTGAAGCAGTGTGTTGACGCAAGACTAA-ACGGAGAATATCCTC 1101
| || ||||||||||| |||||||||||||| ||||||| | ||||| || ||||
Sbjct 882 GCTAAGCGAAGACAAGGTTAAGCAGTGTGTTGATTCAAGACTCGGA-GGAGATTACCCTC 940
Query 1102 CCAAAGCTGTTGCTAAGCTGGCTGCGGTAGCTGCACTGTGTGTGCAATATGAGGCAGACT 1161
| ||||||||||||||| | ||||| || |||||| ||||||| ||||| || || || |
Sbjct 941 CAAAAGCTGTTGCTAAGTTAGCTGCTGTTGCTGCATTGTGTGTACAATACGAAGCTGATT 1000
Query 1162 TCAGGCCTAACATGAGCATAGTGGTGAAGGCTCTTCAGCCGTTGCTCAATCCTC 1215
|||| || |||||||| || || ||||||||||| || || ||| | ||| |||
Sbjct 1001 TCAGACCAAACATGAGTATTGTCGTGAAGGCTCTGCAACCATTGTTGAATGCTC 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5