BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17420.1
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479218 jgi|Araly1|479218|fgenesh2_kg.3__1919__AT3G17420.1 2772 0.0
> Ahg479218 jgi|Araly1|479218|fgenesh2_kg.3__1919__AT3G17420.1
Length=1874
Score = 2772 bits (1501), Expect = 0.0
Identities = 1762/1881 (94%), Gaps = 45/1881 (2%)
Strand=Plus/Plus
Query 45 CTCACCTA-TGGAAACCCTACAAAGATCTCTCTCTCAAGATTTCTGAAAATGGATATATA 103
|||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 26 CTCACC-ATTGGCAACCCTACAAAGATCTCTCTCTCAAGATTTCTGAAAATGGAAATATA 84
Query 104 ATCTCACTGATTTGT-TTCtttttttGTTCTTGTTTCGTTTTCTATATG-TTTATGGATG 161
||||||||||||| | || ||||||| ||||||||||||||||| |||| ||| ||| ||
Sbjct 85 ATCTCACTGATTT-TCTT-TTTTTTT-TTCTTGTTTCGTTTTCTCTATGTTTTGTGGGTG 141
Query 162 AGTTGTAGTTTCCATCTCCCAGCCGGATATAGAAAGAAGAAACAGAGGAAATTTGTTCAT 221
|| |||||| ||||||||||| ||||| |||||||||| ||| ||||||||||||||||
Sbjct 142 AGCTGTAGTCTCCATCTCCCACCCGGACATAGAAAGAAAAAATAGAGGAAATTTGTTCAC 201
Query 222 AAAGGAGGTACAT--ATATACA-CATACAAGTCTCTGTGAAATATGACATCTCAGCTAAA 278
|||||||||| | | || | | | |||||||||||||||||| |||||||||||||
Sbjct 202 AAAGGAGGTA-TTGCGT-TA-ATTAGAAAAGTCTCTGTGAAATATGGCATCTCAGCTAAA 258
Query 279 ACGAACTTTAACCAAGAGATACGGTGTTCTTGAACTGTGGGAGATCATAGTGATTGCTCT 338
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 ACGAACTCTAACCAAGAGATACGGTGTTCTTGAACTGTGGGAGATCATAGTGATTGCTCT 318
Query 339 CTTTGCAGCCTTCATAGTAATCCTTGTCCTTTCAGTTTGGCTCAGCTTCCGTAAAAAGTC 398
|||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 319 ATTTGCAGCGTTCATAGTAATCCTTGTCATTTCAGTATGGCTCAGCTTCCGTAAAAAGTC 378
Query 399 CAAAAGATCTAATGCTACAACGCTTCCTGTAACTCAAAGCCCTCGCTTTACCGAAGAAAT 458
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 379 CAAAAGATCTAATGCTACAACGCTTCCTGTAACTCAAAGCCCTCGCTTTACTGAAGAAAT 438
Query 459 AAAAGAAATAAGTGTTGATCATGGTTCATCTAACAACAATGGTACTTCTTACCAAACTCT 518
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 439 CAAAGAAATAAGTGTTGATCATGTTTCATCTAACAACAATGGTACTTCTTACCCAACTCT 498
Query 519 TGATGAGAAATTCGTTGAGGACATCGAGAATGGCGATAAGTTCTCTGGTTCTTTGGAGAA 578
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 499 TGATGAGAAATTCGTTGAGGACATCGAGAATGGCGATAAGTTTTCTGGTTCTTTGGAGAA 558
Query 579 AAAACCC-CTGGTTGGGTCACATTTGCCTCCTAGTACTCCTTCAACAACAGCTCCTTCAC 637
||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 559 AAAACCCGC-GGTTGGGTCACATTTGCCTCCTAGTACTCCTTTAACAACAGCTCCTTCAC 617
Query 638 CTCTCTTGGGTCTTCCTGAGGTTTCTCACATTGGTTGGGGTCATTGGTTCACTCTCCGTG 697
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 618 CTCTCTTGGGTCTGCCTGAGGTTTCTCACATTGGTTGGGGTCATTGGTTCACTCTTCGTG 677
Query 698 ACCTTCAACTCGCGACTAATCATTTCTCCAAGGAGAGTATCATCGGAGATGGTGGTTATG 757
|||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| || |
Sbjct 678 ACCTTCAACTCGCGACTAATCATTTCTCAAAGGAGAATATCATCGGTGATGGTGGATACG 737
Query 758 GAGTTGTTTACCATGGAACTTTGACTAACAAAACCCCTGTGGCTGTCAAAAAGTTGCTCA 817
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 738 GAGTTGTTTACCATGGAACTTTGACTAATAAAACCCCTGTGGCTGTCAAAAAGCTGCTCA 797
Query 818 ACAATCCAGGTCAAGCTGATAAAGATTTCAGAGTTGAGGTGGAAGCTATAGGACATGTCC 877
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 798 ACAATCCAGGGCAAGCTGATAAAGATTTCAGAGTTGAGGTGGAAGCTATAGGACATGTGC 857
Query 878 GGCATAAGAACTTAGTTCGGCTTCTTGGATATTGCGTTGAAGGAACACATAGGATGCTGG 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 GGCATAAGAACTTAGTTCGGCTTCTTGGATATTGCGTTGAAGGAACACATAGGATGCTGG 917
Query 938 TTTATGAGTACATGAACAATGGGAACTTAGAGCAATGGCTTCATGGAGACATGATTCACA 997
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 918 TTTATGAGTACATGAACAATGGGAACTTAGAGCAATGGCTTCATGGAGACATGAATCACA 977
Query 998 AAGGGCATCTCACTTGGGAGGCTCGCATCAAAGTTCTTGTTGGCACTGCAAAGGCACTGG 1057
||||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||
Sbjct 978 AAGGGCACCTCACTTGGGAAGCTCGGATCAAAGTTCTTGTTGGCACTGCAAAAGCGCTGG 1037
Query 1058 CTTATCTTCACGAAGCTATTGAGCCAAAAGTGGTGCATAGAGACATAAAATCAAGCAATA 1117
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1038 CTTATCTTCACGAAGCTATTGAGCCGAAAGTGGTGCATAGAGACATAAAATCGAGCAATA 1097
Query 1118 TACTGATGGATGACAACTTTGACGCAAAGTTATCTGATTTCGGTCTTGCTAAATTGCTTG 1177
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1098 TACTGATGGATGACAACTTTGACGCAAAGTTATCTGATTTTGGTCTTGCTAAATTGCTTG 1157
Query 1178 GAGCTGATTCAAATTACGTCAGTACTCGAGTTATGGGTACATTCGGGTATGTCGCACCTG 1237
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1158 GAGCTGATTCAAGTTACGTCAGTACTCGAGTTATGGGTACATTCGGGTATGTCGCGCCTG 1217
Query 1238 AATACGCTAACTCTGGTCTCCTAAACGAAAAGAGCGATGTGTACAGCTATGGTGTTGTTC 1297
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1218 AATATGCTAACTCTGGTCTCCTCAACGAAAAGAGCGACGTGTACAGCTATGGTGTTGTTC 1277
Query 1298 TCTTGGAAGCTATTACTGGAAGGTATCCAGTGGATTATGCGCGGCCTAAAGAAGAGGTGC 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TCTTGGAAGCTATTACTGGAAGGTATCCAGTGGATTATGCGCGGCCTAAAGAAGAGGTGC 1337
Query 1358 ATATGGTGGAGTGGTTAAAGCTAATGGTTCAACAGAAACAGTTTGAGGAAGTGGTGGATA 1417
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1338 ATATGGTGGAGTGGTTAAAGCTGATGGTTCAACAGAAACAGTTTGAGGAAGTGGTGGATA 1397
Query 1418 AAGAGCTTGAGATCAAACCAACAACAAGCGAACTTAAACGAGCACTTTTGACAGCTTTAA 1477
|||||||||||||||||||| |||| |||||||||||| |||| |||||||||||||| |
Sbjct 1398 AAGAGCTTGAGATCAAACCATCAACTAGCGAACTTAAAAGAGCGCTTTTGACAGCTTTGA 1457
Query 1478 GATGCGTTGATCCTGATGCAGACAAGAGGCCAAAGATGAGTCAAGTGGCTCGAATGCTTG 1537
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1458 GATGTGTTGATCCTGATGCAGACAAGAGGCCAAAGATGAGTCAAGTGGTTCGAATGCTTG 1517
Query 1538 AATCTGATGAATACCCTGTGATGCCTAGAGAGGAACGAAGAAGAAGGAGAAATCAGAACG 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1518 AATCTGATGAATACCCTGTGATGCCTAGAGAGGAACGAAGAAGAAGGAGAAATCAAAACG 1577
Query 1598 CAGAGACGCATAGAGAAAGCACAGACACGAATAAAGATAATGATATAACAACAGATGCAA 1657
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1578 CAGAGACGCATAGAGAAAGCACAGACACGAATAAAGATAATGATATAATAACAGATGCAA 1637
Query 1658 AGATTTGAGCAAGAAACAGAAACATGGACCCTCCTTTATGACTTAAGGGTTAAAAACAAG 1717
||||||||||||| |||||||||||||||||| ||||||||||| ||| |
Sbjct 1638 AGATTTGAGCAAGGAACAGAAACATGGACCCTTCTTTATGACTT-----TTA-------G 1685
Query 1718 GAAAACTTTTAGATTCTTTGGAGATTGTTTAGATTCTTTACTGTGTCTATAAGTTAATTA 1777
| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 -A----TT-------CTTTGGAGATTGTTTAGATTCTTTACTGTGTCTATAAGTTAATTA 1733
Query 1778 TGTGATATATATAGATACAGAGAAGAACAAGACTTGTTTCTTTTGTCTGGAGAAGGAGAG 1837
||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||
Sbjct 1734 TGTGATATATATAGATACAGAGAAGAACACGATTTGTTTCTTTTGTCTGGAGGAGGAGAG 1793
Query 1838 ATTTGTTGCACA-T-TTTATTA---CCTTCATACAGAGTCAGTTACAGACATAT-TTTAC 1891
|||||||||| | ||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 1794 CTTTGTTGCACTGTCTTTTTTAATACCTTCATACAGAGTCAGTTACAGACATATATTTAC 1853
Query 1892 AAGATAAATTTTATTTGGATC 1912
|| || |||||||||||||||
Sbjct 1854 AAAATGAATTTTATTTGGATC 1874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71952472805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5