BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17430.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479219 jgi|Araly1|479219|fgenesh2_kg.3__1920__AT3G17430.1 2612 0.0
Ahg314258 jgi|Araly1|314258|fgenesh1_pm.C_scaffold_1003038 1016 0.0
> Ahg479219 jgi|Araly1|479219|fgenesh2_kg.3__1920__AT3G17430.1
Length=1659
Score = 2612 bits (1414), Expect = 0.0
Identities = 1546/1609 (96%), Gaps = 12/1609 (1%)
Strand=Plus/Plus
Query 7 AAACTACTGTAGCTAGCTATCTCCAGTTCTACGTTCTTTCTATTAATAAAAtcttcttct 66
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AAACTACTGTAGCTAGCTATCTCCAGTTCTACGTTCTTTCTATTAATATAATCTTCTTCT 60
Query 67 tcttctcttTTTGGTTGATTCCCACCATTGAACCTCTCACGAATTCGTCGTCGTATCATC 126
|||||||| ||| ||||||| ||| || ||| |||||||||||||||||||||||||||
Sbjct 61 TCTTCTCTGTTTCGTTGATT-CCA--ATAGAAGCTCTCACGAATTCGTCGTCGTATCATC 117
Query 127 AGATTCTGCTCGAATAGCTGAATTTGTTTAATCAGATA--G-TGTTCCTCTTGATCTATC 183
|||||||||| || | ||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 118 AGATTCTGCTGGAGTTCCTGAATTTGTTTAATCAGATAGTGTTGTTCGTCTTGATCTATC 177
Query 184 GCTACTAGATTTGTTGTGCGTTTGTTTTCTTTGCTGATAATTTGCAAATTCTCTGCTTAT 243
|||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||
Sbjct 178 GCTACTAGATTTGTTGTGCGTTTGTTGTCTTTGCTGATAATTTCCAGTTTCTCGGCTTAT 237
Query 244 GATCTCGAGGTAATGGCCACAGAGCCTTTGCACCTGGTTTTTATACTGCCGTGTTTTGGT 303
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 238 GATCTCGAGGTAATGGCCACGGAGCCTTTGCACCTGGTTTTTATACTGCTGTGTTTTGGT 297
Query 304 ATTGGTGCAGTG-TAAGAAATTGATTGTCAAAGGAA-AATATTTGCTTTTTCTCTGAGGA 361
|||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 298 ATTGGTGCAGTGACAAGAAATTGATTGTCAAAGGAAGATTATTTGCTTTTTCTCTGAAGT 357
Query 362 GAGGGGACGAGTAAGATGGCAAAGATGATAAACAAGACGCTTGTATTAACTTATATCTAC 421
||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 GAGGGAACGAGGAAGATGGCAAAGATGATAAACAAGACGCTTGTACTAACTTATATCTAC 417
Query 422 TTGCTGATCTACATTATACTTTCTTCAGGAGTTATACTGTACAATAAGTGGGTTTTATCC 481
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 TTGCTGATCTACATTATACTTTCTTCTGGAGTTATACTGTACAATAAGTGGGTTTTATCC 477
Query 482 CCAAAATACTTCAATTTTCCACTTCCTATAACGCTGACAATGATCCATATGGGGTTTGCT 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CCAAAATACTTCAATTTTCCACTTCCTATAACGCTGACAATGATCCATATGGGGTTTGCT 537
Query 542 GGATTCGTGGCTTTCCTTCTTATTCGTGTCTTCAAGGTTGTAGCTCCGGTTAAAATGACA 601
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 538 GGATTCGTGGCTTTCCTTCTTATTCGCGTCTTCAAGGTTGTTGCTCCGGTTAAAATGACA 597
Query 602 TTTGAAATATATGCAACCTGTGTGGTACCTATAAGTGCATTCTTTGCATCAAGTCTCTGG 661
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 598 TTTGAAATATATGCAACCTGTGTGGTACCTATAAGCGCATTTTTTGCATCAAGTCTCTGG 657
Query 662 TTTGGAAATACTGCATATTTGCACATTTCTGTTGCCTTCATTCAGATGCTGAAAGCTCTA 721
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTTGGCAATACTGCATATTTGCACATTTCTGTTGCCTTCATTCAGATGCTGAAAGCTCTA 717
Query 722 ATGCCAGTAGCGACATTTATCATGGCAGTTGTTTGTGGCACTGACAAACCAAGGTGTGAT 781
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 718 ATGCCAGTAGCGACATTTATCATGGCAGTTGTGTGTGGCACTGACAAACCAAGGTGCGAC 777
Query 782 GTGTTCTCGAACATGTTGCTGGTCAGTGTTGGAGTTGTGATATCTTCTTATGGGGAAATT 841
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 GTGTTCTCGAACATGTTGCTGGTCAGTGTTGGAGTTGTGATATCCTCTTATGGGGAAATT 837
Query 842 CATTTCAACATAGTTGGCACAGTCTATCAGGTGACAGGCATCTTTGCTGAAGCACTTAGA 901
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CATTTCAATATAGTTGGCACAGTCTATCAGGTGACAGGCATCTTTGCTGAAGCACTTAGA 897
Query 902 CTGGTGCTAACTCAAGTTCTTCTCCAGAAGAAGGGTTTGACATTGAACCCTATTACCAGC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTGGTGCTAACTCAAGTTCTTCTCCAGAAGAAGGGTTTGACATTGAACCCTATTACCAGC 957
Query 962 TTGTATTACATAGCTCCCTGCAGTTTTGTTTTTCTGGCCTTACCTTGGTATGTGTTAGAG 1021
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 958 TTGTATTACATAGCTCCCTGCAGTTTTGTTTTTCTGGCCTTGCCTTGGTATGTGTTAGAG 1017
Query 1022 AAACCCACAATGGAAGTTTCACAGATCCAATTCAACTTCTGGATATTTTTCTCCAATGCT 1081
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAACCCACAATGGAAGTTTCACAGATCCAATTCAACTTCTGGATATTTTTCTCCAATGCC 1077
Query 1082 CTATGTGCTCTTGCCTTGAACTTCTCCATATTCTTAGTCATTGGGAGAACAGGTGCAGTA 1141
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1078 CTATGTGCTCTTGCCTTGAACTTCTCCATATTCTTAGTAATCGGGAGAACAGGTGCAGTA 1137
Query 1142 ACCATCCGGGTGGCTGGTGTTCTCAAAGACTGGATTCTTATAGCCCTCTCAACCGTCATT 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 ACCATCCGGGTGGCTGGTGTTCTCAAAGACTGGATTCTTATAGCCCTCTCAACTGTCATT 1197
Query 1202 TTCCCCGAGTCCACAATCACTGGGTTGAATATCACTGGATACGCAATAGCGCTATGTGGT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTCCCCGAGTCCACAATCACTGGGTTGAATATCACTGGATACGCAATAGCGCTATGTGGT 1257
Query 1262 GTCGTCATGTACAATTACATAAAAGTAAGGGATGTGAAGGCGTCTCAACCAACAGCTGAC 1321
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1258 GTCGTTATGTACAATTACATAAAAGTAAGGGATGTGAAGGCGTCTCAACCAACTGCTGAC 1317
Query 1322 AGTCTTCCAGATCGAATCAATAAGGAGTACAAGATGGAGAAGAAGTCTTCGGATAAATTC 1381
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 AGTCTTCCAGATCGAATAAATAAGGAGTATAAGATGGAGAAGAAGTCTTCGGATAAATTC 1377
Query 1382 AATCCTAACGACAGTGTGGAGATCCCAAGAGTAGGAGGAGAGGTAAACGACGAGGAAGCC 1441
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1378 AATCCTAATGACAGTGTGGAGATCCCAAGAGTAGGAGGCGAGGTAAACGACGAGGAAGCC 1437
Query 1442 CCTTTGATCACATCCCGGTTGTCTCATATTGGTCGGACGCAGCTCGGAAATCACGCTGCT 1501
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1438 CCTTTGATCACGTCCCGGTTGTCTCATATTGGTCGGACGCAGCTCGGAAATCACGCAGCT 1497
Query 1502 TAAGATGCCGGTATAAACGTATAATAGACATTTTGCTTCCCAATTCGTTATTT-TGTTAC 1560
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1498 TAAGATGCTGGTATAAACGTATAATAGACATTTTGCTTCCCAATTCGTTTTTTCTGTTAC 1557
Query 1561 TTAGAAGaaaaaaaTCTTTGAAACCAAACAAAGAAGTTGCAGCACCATC 1609
|||||| |||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 1558 TTAGAA-AAAAAA-TCTTTGAA-CCAAAAAAAGAAGTTGCAGCACCATC 1603
Score = 99.0 bits (53), Expect = 1e-19
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1638 AAAATTCCAAATTTGTTATGAGATAGAATAGCGGAGATTATTACCAATGATTAGCT 1693
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 AAAATTCCAAATTTATTATGAGATAGAATAGCGGAGATTATTACCAATGATTAGCT 1659
> Ahg314258 jgi|Araly1|314258|fgenesh1_pm.C_scaffold_1003038
Length=1128
Score = 1016 bits (550), Expect = 0.0
Identities = 879/1032 (85%), Gaps = 45/1032 (4%)
Strand=Plus/Plus
Query 377 ATGGCAAAGATGATAAACAAGACGCTTGTA-TTAACTTATATCTACTTGCTGATCTACAT 435
||||| |||||||||||||||||||||||| || || ||||||||||| |||||||||||
Sbjct 1 ATGGCGAAGATGATAAACAAGACGCTTGTACTT-ACCTATATCTACTTACTGATCTACAT 59
Query 436 TATACTTTCTTCAGGAGTTATAC----T------GT-A---C---AA-TA----A--GTG 471
| | |||||||| |||||||||| | || | | || || | ||
Sbjct 60 TCTTCTTTCTTCTGGAGTTATACTATATAACAAGGTGATTGCGGAAACTACTTTACTTTG 119
Query 472 GGTTTTATCCCCAAAATACTTCAATTTTCCACTTCCTATAACGCTGACAATGATCCATAT 531
|||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 GGTTCTATCTCCGAAATACTTCAATTTTCCACTTCCTATAACATTGACAATGATCCATAT 179
Query 532 GGGGTTTGCTGGATTCGTGGCTTTCCTTCTTATTCGTGTCTTCAAGGTTGTAGCTCCGGT 591
||| ||| ||||||| |||||||||||||||||||| || ||||||||||| |||| ||
Sbjct 180 GGGATTTTCTGGATTTGTGGCTTTCCTTCTTATTCGAGTTTTCAAGGTTGTCTCTCCTGT 239
Query 592 TAAAATGACATTTGAAATATATGCAACCTGTGTGGTACCTATAAGTGCATTCTTTGCATC 651
||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 240 TAAAATGACTTTTGAAATATATGTGACCTGTGTGGTGCCTATAAGTGCATTCTTTGCATC 299
Query 652 AAGTCTCTGGTTTGGAAATACTGCATATTTGCACATTTCTGTTGCCTTCATTCAGATGCT 711
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 300 CAGTCTCTGGTTTGGAAATACTGCATATTTGCACATTTCAGTTGCTTTCATACAGATGCT 359
Query 712 GAAAGCTCTAATGCCAGTAGCGACATTTATCATGGCAGTTGTTTGTGGCACTGACAAACC 771
||||| |||||||| ||||| |||||| | ||||| |||||||||||||| |||||| |
Sbjct 360 CAAAGCACTAATGCCGGTAGCAACATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGC 419
Query 772 AAGGTGTGATGTGTTC-TCGAACATGTTGCTGGTCAGTGTTGGAGTTGT-GATATCTTCT 829
||| ||||| |||||| | ||||||| |||||||||||||||||||||| | |||||||
Sbjct 420 AAGATGTGACGTGTTCAT-GAACATGGTGCTGGTCAGTGTTGGAGTTGTAG-TATCTTCC 477
Query 830 TATGGGGAAATTCATTTCAACATAGTTGGCACAGTCTATCAGGTGACAGGCATCTTTGCT 889
|||||||||||| ||||||| || | ||||| ||||| ||||| | || |||||||||
Sbjct 478 TATGGGGAAATTAATTTCAATGTAATCGGCACGGTCTACCAGGTCATGGGAATCTTTGCT 537
Query 890 GAAGCACTTAGACTGGTGCTAACTCAAGTTCTTCTCCAGAAGAAGGGTTTGACATTGAAC 949
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 538 GAAGCACTTAGACTGGTGCTAACTCAAGTTCTTCTTCAGAAGAAGGGCTTGACATTGAAC 597
Query 950 CCTATT-ACCAGCTTGTATTACATAGCTCCCTGCAGTTTTGTTTTTCTGGCCTTACCTTG 1008
|| | | |||||||| || || |||||||| ||||| |||||||| ||| |||| |||||
Sbjct 598 CC-AGTCACCAGCTTATACTATATAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTG 656
Query 1009 GTATGTGTTAGAGAAACCCACA-ATGGAAGTTTCACAGATCCAATTCAACTTCTGGATAT 1067
|||||| | |||||||| | | || || || || ||||||||||||||||||||||| |
Sbjct 657 GTATGTACTGGAGAAACCGA-ATATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCT 715
Query 1068 TTTTCTCCAATGCTCTATGTGCTCTTGCCTTGAACTTCTCCATATTCTTAGTCATTGGGA 1127
||||||| || ||||| || || |||||||| |||||||||||||||||||| || || |
Sbjct 716 TTTTCTCAAACGCTCTCTGCGCACTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAA 775
Query 1128 GAACAGGTGCAGTAACCATCCGGGTGGCTGGTGTTCTCAAAGACTGGATTCTTATAGCCC 1187
||||||| || ||||| |||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 776 GAACAGGCGCTGTAACAATCCGGGTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCC 835
Query 1188 TCTCAACCGTCAT-TTTCCCCGAGTCCACAATCACTGGGTTGAATATCACTGGATACGCA 1246
|||| || ||||| ||||| |||||||||||||||||| ||||||| |||||||| |||
Sbjct 836 TCTCCACTGTCATATTTCCT-GAGTCCACAATCACTGGGCTGAATATTACTGGATATGCA 894
Query 1247 ATAGCGCTATGTGGTGTCGTCATGTACAATTACATAAAAGT-AAGGGATGTGAAGGCG-T 1304
|||||||| |||||||| || |||||||||||||||||| | |||| |||| || ||| |
Sbjct 895 ATAGCGCTCTGTGGTGTTGTAATGTACAATTACATAAAAATCAAGG-ATGTAAAAGCGAT 953
Query 1305 CTCAACCAAC-AGCTGACAGTCTTCCAGATCGAATCAATAAGGAGTACAAGATGGAGAAG 1363
||||||||| ||| ||||| || ||||||||||||| ||||| | ||| | |||||
Sbjct 954 -TCAACCAACCAGC-GACAGCCTCCCAGATCGAATCACGAAGGATTGGAAG--G-AGAAG 1008
Query 1364 AAGTCTTCGGAT 1375
|| ||||| |||
Sbjct 1009 AATTCTTCAGAT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5