BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17440.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479220 jgi|Araly1|479220|fgenesh2_kg.3__1921__AT3G17440.1 1842 0.0
Ahg314259 jgi|Araly1|314259|fgenesh1_pm.C_scaffold_1003039 320 2e-86
> Ahg479220 jgi|Araly1|479220|fgenesh2_kg.3__1921__AT3G17440.1
Length=1170
Score = 1842 bits (997), Expect = 0.0
Identities = 1117/1171 (95%), Gaps = 24/1171 (2%)
Strand=Plus/Plus
Query 202 TCTCCGGCGACATGGCTTCTAATCTCCCCATGAGCCCTCAATTGGAGCAGATCCATGGCG 261
|||||||||| |||||||| ||||| || |||||||||||||| ||||||||||||||||
Sbjct 18 TCTCCGGCGATATGGCTTCAAATCTTCCTATGAGCCCTCAATTAGAGCAGATCCATGGCG 77
Query 262 AAATCCGTGACCATTTCCGAGCCCTCGCGAATGGTTTCCAGAGGTTGGATAAGATTAAGG 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 78 AAATCCGTGACCATTTCCGAGCCCTCGCGAATGGTTTCCAGAGGTTGGATAAGATCAAGG 137
Query 322 ATTCAACTAGACAAAGCAAACAACTTGAAGAACTTACTGACAAGATGAGAGAGTGTAAAA 381
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 138 ATTCAACTAGACAAAGCAAACAACTTGAAGAACTTACTGAGAAGATGAGAGAATGTAAAA 197
Query 382 GATTGGTCAAAGAGTTCGACCGTGAACTCAAGGATGAGGAAGCTAGAAATTCTCCTGAAG 441
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GGTTGGTCAAGGAGTTCGACCGTGAACTCAAGGATGAGGAAGCTAGAAATTCTCCTGAAG 257
Query 442 TAAATAAGCAATTGAACGATGAGAAACAATCTATGATCAAGGAGCTCAATTCTTACGTTG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TAAATAAGCAATTGAACGATGAGAAACAATCTATGATCAAGGAGCTCAATTCTTACGTTG 317
Query 502 CTCTAAGAAAAACGTATATGAGTACCCTTGGCAACAAGAAAGTTGAGCTTTTTGATATGG 561
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 318 CACTAAGAAAAACGTATATGAGTACCCTTGGCAACAAGAAAGTTGAGCTTTTCGATATGG 377
Query 562 GAGCTGGAGTTAGTGGCGAACCTACAGCTGAGGAAAATGTTCAAGTGGCTTCATCTATGT 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GAGCTGGAGTTAGTGGCGAACCTACAGCTGAGGAAAATGTTCAAGTGGCTTCATCTATGT 437
Query 622 CAAACCAGGAGCTTGTTGATGCTGGAATGAAAAGAATGGATGAGACTGATCAGGCCATTG 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CAAACCAGGAGCTTGTTGATGCTGGAATGAAAAGAATGGATGAGACTGATCAGGCCATTG 497
Query 682 AGCGCTCAAAACAGGTTGTAGAACAAACACTCGAAGTTGGAACTCAAACTGCAGCTAATT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 AGCGCTCAAAACAGGTTGTAGAACAAACACTCGAAGTTGGAACTCAAACTGCAGCTAATT 557
Query 742 TAAAGGGACAGACGGATCAAATGGGACGCGTAGTTAACCACTTGGACACTATTCAATTCT 801
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 558 TAAAGGGACAGACGGATCAAATGGGACGCGTTGTTAACCACTTGGACACTATTCAATTCT 617
Query 802 CAATCAAGAAGGCCTCCCAGCTGGTGAAAGAGATAGGGAGACAGGTGGCTACCGATAAAT 861
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CAATCAAGAAAGCCTCCCAGCTGGTGAAAGAGATAGGGAGACAGGTGGCTACCGATAAAT 677
Query 862 GCATAATGGGGTTCCTGTTTCTCATTGTATGCGGTGTAGTAGCCATAATCATAGTGAAGA 921
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 678 GCATAATGGGGTTCCTGTTTCTCATTGTATGTGGTGTAGTAGCCATTATCATAGTGAAGA 737
Query 922 TCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCTCCAGCGCAAT 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCTCCAGCGCAAT 797
Query 982 CGAGGAAGCTATTGTACTTGAGGAATCAAGACTACATGTGAGAATATAAATCTCTATTTG 1041
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 798 CGAGGAAACTGTTGTACTTGAGGAATCAAGACTACATGTGAGATTATAAATCTCTATTTG 857
Query 1042 TATATTTATTCACGAGGAATGAGGAAATTGCATCTTGAGGTTCGATATTTCCTTCTAATT 1101
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 858 TATATTTATTCACGAGGAATGAGGAAATTGCATCTTGAGGTTCGATATTTCCTTTTAATT 917
Query 1102 TGTTAACAATCCATTTCATGGATGTTAGAGAGAGGGTTTGTG-CTTGTTGGCATTGTGTG 1160
|||||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 918 TGTTAACACTCCATTTCATGGATG--AGAGAGAGGGTTTGGGGCTTGTTGGCATTGTGTG 975
Query 1161 CTTTGATAGTTG-ACGAGGCTTGGGGATGTTTATCTTCATGTTCTTTTACTTGTTTTAAC 1219
|||||||||||| | ||| ||||| ||||||||| |||||||| ||| ||| |||
Sbjct 976 CTTTGATAGTTGCA-GAGTCTTGGAGATGTTTAT------GTTCTTTTGCTT-TTT-AAC 1026
Query 1220 CCA-TTCGTTTGAATCTGGGTTT-GATTGGAGGGTGTGTATAttttcagcttttgtctct 1277
||| || |||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct 1027 CCAATT-GTTTGAATCTGGGTTTTGATTGGAGGGTGTGTAAATTTTCGGCTTTTGTCT-- 1083
Query 1278 atttctttttccttcttcttttttgtagcaacttatcacttcttttGTATAAAATTCAGA 1337
||||||||||| || || | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1084 ATTTCTTTTTC-TT-TT-TGTTTTGTAGCAACTCATCACTTCTTTTGTATAAAATTCAGA 1140
Query 1338 CCAATGTTATACTCTCTC--ACGTTTTCATT 1366
||| |||||||||||||| ||||| |||||
Sbjct 1141 CCA-TGTTATACTCTCTCTCACGTTCTCATT 1170
> Ahg314259 jgi|Araly1|314259|fgenesh1_pm.C_scaffold_1003039
Length=858
Score = 320 bits (173), Expect = 2e-86
Identities = 227/253 (90%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 231 ATGAGCCCTCAATTGGAGCAGATCCATGGCGAAATCCGTGACCATTTCCGAGCCCTCGCG 290
||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 19 ATGAGCCCTCATTTGGAGCAGATTCACGGAGAAATCCGTGACCATTTCCGAGCCCTCGCA 78
Query 291 AATGG-TTTCCAGAGGTTGGATAAGATTAAGGATTC-AACTAGACAAAGCAAACAACTTG 348
||||| |||| |||||||||||||||| |||||||| || |||||||||||| ||||| |
Sbjct 79 AATGGCTTTC-AGAGGTTGGATAAGATCAAGGATTCTAA-TAGACAAAGCAAGCAACTCG 136
Query 349 AAGAACTTACTGACAAGATGAGAGAGTGTAAAAGATTGGTCAAAGAGTTCGACCGTGAAC 408
|||||||| |||| ||||||||||| |||||||| ||||| || ||||| || |||||||
Sbjct 137 AAGAACTTGCTGAGAAGATGAGAGACTGTAAAAGGTTGGTTAAGGAGTTTGATCGTGAAC 196
Query 409 TCAAGGATGAGGAAGCTAGAAATTCTCCTGAAGTAAATAAGCAATTGAACGATGAGAAAC 468
|||| |||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 197 TCAAAGATGGGGAAGCTCGAAATTCTCCTGAAGTAAATAAGCAGTTGAATGATGAGAAAC 256
Query 469 AATCTATGATCAA 481
|||||||| ||||
Sbjct 257 AATCTATGTTCAA 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5