BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17460.1
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929600 jgi|Araly1|929600|scaffold_302057.1 878 0.0
> Ahg929600 jgi|Araly1|929600|scaffold_302057.1
Length=644
Score = 878 bits (475), Expect = 0.0
Identities = 559/600 (93%), Gaps = 3/600 (1%)
Strand=Plus/Plus
Query 1 ATGAATCCGGAACAGAAACAGCGCGAATGCATAGTCTGCCGTGAAAAAGAGCCGTCGTTC 60
|||||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 25 ATGAATTCGGAACAGAATCAACGCGAATGCATAGTATGCCGTGAAAAAGAGCCGTCGTTC 84
Query 61 ATCCACACCGTCATCAAAACCGGCGCTTTCCGGCGACTCTGCACCGATTGTTTGCTCAAA 120
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 85 ATCCACACCGTCGGCAAAACCGGCGTTTTCCGGCGACTCTGCACCGATTGTTTGCTCAAA 144
Query 121 GAGTACCGAGAACACTTTTGCTCTGTTTGTTTCAATCTCTTCGACAACGCCGTTCCTCCA 180
|| || || || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 GAATATCGTGAGCTCTTTTGCTCTGTTTGTTTCAATCTCTTCGACAACGCCGTTCCTCCA 204
Query 181 CAAGCTCGTATCATCTGCGTCAATTGCCCATCAAGCACCCACCTTTCTTGCTCAACTCAG 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 205 CAAGCTCGTATCATCTGCGTCAATTGCCCTTCAAGCACCCACCTTTCTTGCTCTTCTCAG 264
Query 241 CCGCCGTCTTCCTCC---GCCGCATCTTCCTCCTCCTCCGCTCCACCACCAGCTTCTTCC 297
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 265 CCGCCGTCTTCCTCCACCGCCGCATCTTCATCCTCCTCCGCTCCACCACCAGCTTCTTCC 324
Query 298 TTCACATGCCAGCCATGTTCTAACCCCAATTTCACCTTCTTCCCCAAATCTCGAGTCAAT 357
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 325 TTCACATGCCTGCCATGTTCTAACCCCAATTTCACCTTCTTCCCCAAATCTCGTGTCAAT 384
Query 358 GAAGACGTCCCCGATGAAACGCCTCTCACTCCGAAATCGGCAATGGCTCTTGTCGCAGCT 417
|| |||||||| || ||||||||||||| | || ||||||| ||||||||||||||||||
Sbjct 385 GATGACGTCCCTGAAGAAACGCCTCTCAGTGCGGAATCGGCCATGGCTCTTGTCGCAGCT 444
Query 418 GGAAATATCTCGGTGGCTAATATGAATAAAGCGGTGGCTCTGTTAAAGGAAGAAGCTCTT 477
| ||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
Sbjct 445 GCAAAGATCTCGGTGGCTAATATGAATAACGCGGTGGCTCTGTTAAAAGATGAAGCTCGT 504
Query 478 AAGAAGATCATAGCAGCTAAAACGGCCAAGTTGAGAGCTAAAGGTGCATTGACGAATCTT 537
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 505 AAGAAGATCATAGCAGCTAAAGCGGCCAAGTTGAGAGCTAAAGGTGCATTGGCGAATCTT 564
Query 538 CAGGATATTGTTATTCGACAGAGTAAGGTCACCGGCAAGAGGAAGGAAGATGAACGCTGA 597
|||||||||||||||| | ||| ||| | |||||||||||||||||||||||||||||||
Sbjct 565 CAGGATATTGTTATTCAAAAGAATAAAGCCACCGGCAAGAGGAAGGAAGATGAACGCTGA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21863152497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5