BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17465.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479224 jgi|Araly1|479224|fgenesh2_kg.3__1925__AT3G17465.1 1908 0.0
> Ahg479224 jgi|Araly1|479224|fgenesh2_kg.3__1925__AT3G17465.1
Length=1263
Score = 1908 bits (1033), Expect = 0.0
Identities = 1202/1280 (94%), Gaps = 26/1280 (2%)
Strand=Plus/Plus
Query 9 AGTTCTGGTTTCTGCATCTCTCTCCTTCTTCGTTTAGACTTTAGCCATTGAAGGTCGCTT 68
||||| ||||||||||||||| |||||| || | |||||||||||||| | ||||
Sbjct 1 AGTTCCGGTTTCTGCATCTCTTTCCTTCATC---T----TTTAGCCATTGAAGTTAGCTT 53
Query 69 CGATTCGAAATCATGGCGGCCGTACCGAGAGGCCTCCTTTCTCGAATCAATCAGTTTCTA 128
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 54 CGATTCGAAATCATGGCGGCCGTACCGAGAGGCCTCATTTCTCGCATCAATCAGTTTTTA 113
Query 129 TCAATACGGTCTATAACTCCTTCATCCTCTGAATCTCTTCCTCATTGTAGTAGCTTCTTT 188
||| | |||||||||||| ||||||||||||||||||| ||||| | | |||||||||||
Sbjct 114 TCAGTCCGGTCTATAACTTCTTCATCCTCTGAATCTCTACCTCA-T-T-GTAGCTTCTTT 170
Query 189 CT-CATCCGACGATTCAGCTCCGATACTGGGTTGATGGACGGTGGTGGATCTGATATTAT 247
|| | ||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 171 CTGC-TCCGACGATTCAGCTCCGATACTGGGTCGGTCGACGGTGGTGGATCTGATATTAT 229
Query 248 CGGGGCTCAGACCCGAATCATTGAGGCGAAACAAGGTGAGATGTCT-AGTAGATCCAAG- 305
||||||| || ||||||| |||||||||||||||||||||||| || || | | ||
Sbjct 230 TGGGGCTCCGAATAGAATCATCGAGGCGAAACAAGGTGAGATGTCTCAG-AGCT-CTAGA 287
Query 306 AGGACTGGGATCATCGCGGTTAAGTGTGGGATGACTGCGCTCTGGGACAAATGGGGAAAG 365
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 288 AGGACTGGGATCATCGCCGTCAAGTGTGGGATGACTGCGCTCTGGGACAAATGGGGAGCT 347
Query 366 AGGATTCCGATTTCTATTCTTTGGGTTGATGATAATATCGTCTCTCAGGTTAAAACTGTT 425
||| ||||||| |||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 348 AGGGTTCCGATATCTATTCTTTGGGTTGATGACAACATTGTCTCTCAGGTTAAAACTGTT 407
Query 426 GAGAAAGAAGGCATTTTTGCGTTACAGATCGGATGTGGGCAAAAGAAACCGAAGCATTTG 485
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GAGAAAGAAGGGATTTTTGCGTTACAGATCGGATGTGGGCAAAAGAAACCGAAGCATTTG 467
Query 486 TCAAAAGCTGTGGTGGGGCATTTCAGAGCACAAGGTGTGCCGTTAAAGAGGAAGTTGAGG 545
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TCAAAGGCTGTGGTGGGGCATTTCAGAGCACAAGGTGTGCCGTTAAAGAGGAAGTTGAGG 527
Query 546 GAATTTCCTGTGACTGAAGACGCTCTTCTTCCTGTTGGTACTTCACTCGGTGTCCGCCAT 605
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 528 GAATTTCCTGTGACTGAAGACGCTCTTCTTCCTGTTGGTACTTCACTCGGAGTCCGCCAT 587
Query 606 TTTGTTCCGGGACAGTACGTTGATGTCACTGGGATCACTCGAGGAAAAGGTTTTCAGGGA 665
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TTTGTTCCGGGACAGTATGTTGATGTCACTGGGATCACTCGAGGAAAAGGTTTTCAGGGA 647
Query 666 TGCATGAAAAGACATGGTTTCAGTGGAATGCCGGCATCACATGGTGCTTCATTGTCCCAT 725
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 648 TGCATGAAAAGACATGGTTTCAGTGGAATGCCGGGATCACATGGTGCTTCATTGTCCCAT 707
Query 726 CGAAGCGGGGGTTCCACAGGGCAAAGAGATGCTCCTGGAAAGGTGTTCAAGGGCAGAAAG 785
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 708 CGAAGCGGTGGTTCCACAGGGCAAAGAGATGCTCCTGGAAAGGTGTTCAAGGGAAAAAAA 767
Query 786 ATGGCTGGGAGAATGGGTGCAGATCAGAGGACAGTAAAGAACGTTTGGGTCTACAAGATC 845
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 768 ATGGCTGGGAGAATGGGTGCAGATCAGAGGACAGTAAAGAACGTTTGGGTTTACAAGATC 827
Query 846 GATCCTGCGAGGAACCTCATGTGGGTGAGAGGACAAGTTCCTGGTGCAGAAGGAAACTTT 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 GATCCTGCGAGGAACCTCATGTGGGTGAGAGGACAAGTTCCTGGTGCAGAAGGAAACTTT 887
Query 906 GTGTTCATAAAAGATGCATGGTGCAAGAAACCAGACATCTCAAAGCTTCCGTTTCCAACT 965
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 888 GTGTTCATAAAAGATGCATGGTGCAAGAAACCAGACATCTCAAAGCTTCCATTTCCAACT 947
Query 966 TACTTAGCTCCAGAAGATGAAGATCCATCAGAATTAGAACCGTTGGTTGCAGATCTTGGA 1025
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TACTTAGCTCCGGAAGATGAAGATCCATCAGAATTAGAACCGTTGGTTGCAGATCTTGGA 1007
Query 1026 GAAGTTGACCCATTTATGTTGGCAGAGTGATGAAAACAGCATGATCTTGATCTTTATTTG 1085
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1008 GAAGTTGACCCATTTATGTTGGCAGAGTGATGAAAACAACATGATCTTGATCTTCATTTT 1067
Query 1086 GGCTTTT-ACAATGATTAGAGACCAGAAAGAAGCTGTGGAAGTGAAGGAATCACAGAGCT 1144
||||||| ||| | || |||||||||||||||||||||||||| | ||||||||||||
Sbjct 1068 GGCTTTTTACATTAATGGGAGACCAGAAAGAAGCTGTGGAAGTG--G-AATCACAGAGCT 1124
Query 1145 AAAGCTTTTTGCAGATGAA-TT--T-GTCTTTTTCTTATTTTAGTTGTTTGGATGTATGA 1200
||||||||||||||||||| || | ||||||| ||||||||||||||||||||||||||
Sbjct 1125 AAAGCTTTTTGCAGATGAAATTAATTGTCTTTT-CTTATTTTAGTTGTTTGGATGTATGA 1183
Query 1201 TTTGAAAACGATTAAATAGAGGAATTTAGGCTTGCTCGCATTTGTTATATCACAATGCTT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TTTGAAAACGATTAAATAGAGGAATTTAGGCTTGCTCGCATTTGTTATATCACAATGCTT 1243
Query 1261 AA-GAGTTTGCAATAAGCAA 1279
|| |||||||||||||||||
Sbjct 1244 AAAGAGTTTGCAATAAGCAA 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5