BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17480.1

Length=1122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929561 jgi|Araly1|929561|scaffold_302018.1                        167    2e-40
  Ahg929119 jgi|Araly1|929119|scaffold_301576.1                       75.0    1e-12


> Ahg929561 jgi|Araly1|929561|scaffold_302018.1
Length=1027

 Score =  167 bits (90),  Expect = 2e-40
 Identities = 210/266 (79%), Gaps = 16/266 (6%)
 Strand=Plus/Plus

Query  22   ATGTCCG-TTCTTACCGAAGATTTGGTAGAGGATATACTCTCTAGGGTTCCAGCGACATC  80
            ||||||| | ||| | || ||||||||||| || |||||||||| || ||| || | |||
Sbjct  30   ATGTCCGATCCTT-CAGAGGATTTGGTAGAAGAGATACTCTCTAAGGATCCGGCTAGATC  88

Query  81   TCTAG-TTCGATTACGATCTACTTGCAAACAGTGGAACGCAATATTAAATGATCGTAGAT  139
            ||| |   |||||||||||||||||||||||||||||| || |||| ||||||| |||||
Sbjct  89   TCT-GAAACGATTACGATCTACTTGCAAACAGTGGAACACATTATTCAATGATCATAGAT  147

Query  140  TCATCAAGAAGCACTTTGATACAGCAGAAAAGGAGTATT-TGGATATGTTGTT-AAGGAG  197
            ||| ||||||||||| ||||| ||||  |||||||| || | | | |  |||| ||| | 
Sbjct  148  TCACCAAGAAGCACTATGATAAAGCACCAAAGGAGT-TTCTAGTTCTCATGTTGAAG-AC  205

Query  198  TCT-TAGGGTTTCTTC-GATGAGTGTCAATCTCCAT-GGACTTCATGACAACATTGATCC  254
            | | || ||||| ||  | |||||||||| ||| |  ||| ||||  |||||||||||||
Sbjct  206  T-TATAAGGTTTATTTAG-TGAGTGTCAAACTC-AGCGGAATTCACAACAACATTGATCC  262

Query  255  T-TCTATAGAGCTAAAGCGTGAACTT  279
              | ||| ||| | ||| ||||||||
Sbjct  263  GGT-TATGGAGGTTAAGGGTGAACTT  287


> Ahg929119 jgi|Araly1|929119|scaffold_301576.1
Length=1282

 Score = 75.0 bits (40),  Expect = 1e-12
 Identities = 67/79 (85%), Gaps = 6/79 (8%)
 Strand=Plus/Plus

Query  42   TTTGGTAGAGGATATACTCTCTAGGGTTCCAGCGACATCTCT-AGTTCGATTACGATCTA  100
            |||||||||||||||||||||||||||||| | ||||||||| ||  | || ||||| ||
Sbjct  62   TTTGGTAGAGGATATACTCTCTAGGGTTCCGGTGACATCTCTCAGAGCAAT-ACGAT-TA  119

Query  101  -CTTGCA-AACAGTGGAAC  117
             |||||| |||  ||||||
Sbjct  120  ACTTGCACAACC-TGGAAC  137



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41820839949


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5