BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17480.1 Length=1122 Score E Sequences producing significant alignments: (Bits) Value Ahg929561 jgi|Araly1|929561|scaffold_302018.1 167 2e-40 Ahg929119 jgi|Araly1|929119|scaffold_301576.1 75.0 1e-12 > Ahg929561 jgi|Araly1|929561|scaffold_302018.1 Length=1027 Score = 167 bits (90), Expect = 2e-40 Identities = 210/266 (79%), Gaps = 16/266 (6%) Strand=Plus/Plus Query 22 ATGTCCG-TTCTTACCGAAGATTTGGTAGAGGATATACTCTCTAGGGTTCCAGCGACATC 80 ||||||| | ||| | || ||||||||||| || |||||||||| || ||| || | ||| Sbjct 30 ATGTCCGATCCTT-CAGAGGATTTGGTAGAAGAGATACTCTCTAAGGATCCGGCTAGATC 88 Query 81 TCTAG-TTCGATTACGATCTACTTGCAAACAGTGGAACGCAATATTAAATGATCGTAGAT 139 ||| | |||||||||||||||||||||||||||||| || |||| ||||||| ||||| Sbjct 89 TCT-GAAACGATTACGATCTACTTGCAAACAGTGGAACACATTATTCAATGATCATAGAT 147 Query 140 TCATCAAGAAGCACTTTGATACAGCAGAAAAGGAGTATT-TGGATATGTTGTT-AAGGAG 197 ||| ||||||||||| ||||| |||| |||||||| || | | | | |||| ||| | Sbjct 148 TCACCAAGAAGCACTATGATAAAGCACCAAAGGAGT-TTCTAGTTCTCATGTTGAAG-AC 205 Query 198 TCT-TAGGGTTTCTTC-GATGAGTGTCAATCTCCAT-GGACTTCATGACAACATTGATCC 254 | | || ||||| || | |||||||||| ||| | ||| |||| ||||||||||||| Sbjct 206 T-TATAAGGTTTATTTAG-TGAGTGTCAAACTC-AGCGGAATTCACAACAACATTGATCC 262 Query 255 T-TCTATAGAGCTAAAGCGTGAACTT 279 | ||| ||| | ||| |||||||| Sbjct 263 GGT-TATGGAGGTTAAGGGTGAACTT 287 > Ahg929119 jgi|Araly1|929119|scaffold_301576.1 Length=1282 Score = 75.0 bits (40), Expect = 1e-12 Identities = 67/79 (85%), Gaps = 6/79 (8%) Strand=Plus/Plus Query 42 TTTGGTAGAGGATATACTCTCTAGGGTTCCAGCGACATCTCT-AGTTCGATTACGATCTA 100 |||||||||||||||||||||||||||||| | ||||||||| || | || ||||| || Sbjct 62 TTTGGTAGAGGATATACTCTCTAGGGTTCCGGTGACATCTCTCAGAGCAAT-ACGAT-TA 119 Query 101 -CTTGCA-AACAGTGGAAC 117 |||||| ||| |||||| Sbjct 120 ACTTGCACAACC-TGGAAC 137 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41820839949 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5