BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17490.1 Length=1167 Score E Sequences producing significant alignments: (Bits) Value Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 154 1e-36 Ahg933273 jgi|Araly1|933273|scaffold_401261.1 84.2 2e-15 Ahg907234 jgi|Araly1|907234|Al_scaffold_0002_315 80.5 3e-14 Ahg929654 jgi|Araly1|929654|scaffold_302111.1 76.8 3e-13 Ahg912493 jgi|Araly1|912493|Al_scaffold_0001_2747 67.6 2e-10 Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645 56.5 4e-07 Ahg951952 jgi|Araly1|951952|scaffold_2600003.1 52.8 5e-06 Ahg930648 jgi|Araly1|930648|scaffold_303105.1 52.8 5e-06 Ahg930636 jgi|Araly1|930636|scaffold_303093.1 52.8 5e-06 > Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 Length=1112 Score = 154 bits (83), Expect = 1e-36 Identities = 235/302 (78%), Gaps = 35/302 (12%) Strand=Plus/Plus Query 292 GATTTCG-AAAT-ATCACAAATCTATCCCTGCGACGGTTTAATATTATGCTCCACGAAGC 349 ||||| | |||| | || |||||| || ||| ||||||||||||||||||||||| ||| Sbjct 217 GATTT-GAAAATAACCA-AAATCTTTCACTGTGACGGTTTAATATTATGCTCCACTAAG- 273 Query 350 G-TAACACTAGACTCGTGGTTTGGAACCC-CTGTACCGGTCAAACCAGGTGGATCAAACG 407 | |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| Sbjct 274 GAAAACACTAGACTCGTTGTTTGGAACCCAC-GTACCGGTCAAACCAGGTGGATCAAACG 332 Query 408 CAG-GAATCGT-A--GGATGTGTG-ATACCT-TTGCTTTTGGATATG-ACAACAGCAAGT 460 ||| || | || | ||| ||| | || | ||| | ||||||| | | |||||||||| Sbjct 333 CAGTGATT-GTTACCGGA-GTGAGGATTTGTATTG-TCTTGGATACGTA-AACAGCAAGT 388 Query 461 CTTCTTGCCTTAATAACTACAAAATCCTGAGGGT-TTGCGAAAAAATAAAAGGAC-AGCA 518 |||||| || | || | |||||||| ||||| | |||| | || || ||| || | Sbjct 389 CTTCTTACC--A-TAGCCACAAAATCTTGAGG-TATTGCTTTTAT-TACAACGACCAGAA 443 Query 519 -GTTTGAGTA--TGAA----A--TCTTTGAGTTTAGCTCTAATTCATGGAGGGTTCTCGA 569 ||||| || |||| | ||| ||| ||||||||| |||||||||||||||| || Sbjct 444 TGTTTGTGTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGA 503 Query 570 TG 571 || Sbjct 504 TG 505 > Ahg933273 jgi|Araly1|933273|scaffold_401261.1 Length=934 Score = 84.2 bits (45), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 311 TCTATCCCTGCGACGGTTTAATATTATGC-TCCACGAAGCGTAACACTAGACTCGTGGTT 369 ||| || |||| |||||||| | |||||| | ||| || | ||| |||| | |||||| Sbjct 133 TCTCTCACTGCAACGGTTTATTGTTATGCAACAACGGAGAAT-ACAATAGAATAGTGGTT 191 Query 370 TGGAACCCCTGTACCGGTCAAACCAGGTGGATCAAACGCAGGAA 413 ||||||||||||||||||||||||| ||||||| ||| || ||| Sbjct 192 TGGAACCCCTGTACCGGTCAAACCAAGTGGATCGAAC-CAAGAA 234 > Ahg907234 jgi|Araly1|907234|Al_scaffold_0002_315 Length=1137 Score = 80.5 bits (43), Expect = 3e-14 Identities = 120/155 (77%), Gaps = 14/155 (9%) Strand=Plus/Plus Query 3 GATGATG-CCTCATCTTTCAG-AGGATTTGGTAGAGGAGATACTCTCTAGGGTTCCGGCT 60 ||||||| || ||||||| | ||| |||||||||||||||||||||||||||||| | Sbjct 6 GATGATGTCC-GATCTTTC-GAAGGGTTTGGTAGAGGAGATACTCTCTAGGGTTCCAA-T 62 Query 61 ATA-T-CTCTAAAACGAT-T-ACGATATACTTGCAAACAATGGAA-TGCTTTGTTTAATG 115 | | | |||| | | | | | | ||| |||||||||||||||||| || ||| || | Sbjct 63 A-ACTTCTCTGAGA-GCTGTGA-GATCTACTTGCAAACAATGGAACTG-TTTAACCAAAG 118 Query 116 ATCAAAGATTCAGTAAGAAGCACCGTGATAAAGCA 150 ||| || || | |||||||| ||||||||||| Sbjct 119 ATCCTAGCTTTACAAAGAAGCAATGTGATAAAGCA 153 > Ahg929654 jgi|Araly1|929654|scaffold_302111.1 Length=742 Score = 76.8 bits (41), Expect = 3e-13 Identities = 69/82 (84%), Gaps = 4/82 (5%) Strand=Plus/Plus Query 14 ATCTTTCA-GAGGATTTGGTAGAGGAGATACTCTCTAGGGTTCCGGCT-ATATCTCTAAA 71 ||||| || | |||| |||||||||||||||||||||||||||||| | | |||| | | Sbjct 31 ATCTTCCATG-GGATGTGGTAGAGGAGATACTCTCTAGGGTTCCGG-TGACATCTTTGAG 88 Query 72 ACGATTACGATATACTTGCAAA 93 ||| ||| ||| |||||||||| Sbjct 89 ACGGTTAAGATCTACTTGCAAA 110 > Ahg912493 jgi|Araly1|912493|Al_scaffold_0001_2747 Length=1245 Score = 67.6 bits (36), Expect = 2e-10 Identities = 42/45 (93%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 525 GTATGAAATCTTTGAGTTTAGCTCTAATTCATGGAGGGTTCTCGA 569 ||| ||||||| ||| ||||||||||||||||||||||||||||| Sbjct 495 GTACGAAATCTATGACTTTAGCTCTAATTCATGGAGGGTTCTCGA 539 > Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645 Length=966 Score = 56.5 bits (30), Expect = 4e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 27 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 56 |||||||||||||||||||||||||||||| Sbjct 21 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 50 > Ahg951952 jgi|Araly1|951952|scaffold_2600003.1 Length=428 Score = 52.8 bits (28), Expect = 5e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 24 GGATTTGGTAGAGGAGATACTCTCTAGG 51 |||||||||||||||||||||||||||| Sbjct 47 GGATTTGGTAGAGGAGATACTCTCTAGG 74 > Ahg930648 jgi|Araly1|930648|scaffold_303105.1 Length=428 Score = 52.8 bits (28), Expect = 5e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 24 GGATTTGGTAGAGGAGATACTCTCTAGG 51 |||||||||||||||||||||||||||| Sbjct 47 GGATTTGGTAGAGGAGATACTCTCTAGG 74 > Ahg930636 jgi|Araly1|930636|scaffold_303093.1 Length=428 Score = 52.8 bits (28), Expect = 5e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 24 GGATTTGGTAGAGGAGATACTCTCTAGG 51 |||||||||||||||||||||||||||| Sbjct 47 GGATTTGGTAGAGGAGATACTCTCTAGG 74 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43536371214 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5