BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17490.1
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 154 1e-36
Ahg933273 jgi|Araly1|933273|scaffold_401261.1 84.2 2e-15
Ahg907234 jgi|Araly1|907234|Al_scaffold_0002_315 80.5 3e-14
Ahg929654 jgi|Araly1|929654|scaffold_302111.1 76.8 3e-13
Ahg912493 jgi|Araly1|912493|Al_scaffold_0001_2747 67.6 2e-10
Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645 56.5 4e-07
Ahg951952 jgi|Araly1|951952|scaffold_2600003.1 52.8 5e-06
Ahg930648 jgi|Araly1|930648|scaffold_303105.1 52.8 5e-06
Ahg930636 jgi|Araly1|930636|scaffold_303093.1 52.8 5e-06
> Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1
Length=1112
Score = 154 bits (83), Expect = 1e-36
Identities = 235/302 (78%), Gaps = 35/302 (12%)
Strand=Plus/Plus
Query 292 GATTTCG-AAAT-ATCACAAATCTATCCCTGCGACGGTTTAATATTATGCTCCACGAAGC 349
||||| | |||| | || |||||| || ||| ||||||||||||||||||||||| |||
Sbjct 217 GATTT-GAAAATAACCA-AAATCTTTCACTGTGACGGTTTAATATTATGCTCCACTAAG- 273
Query 350 G-TAACACTAGACTCGTGGTTTGGAACCC-CTGTACCGGTCAAACCAGGTGGATCAAACG 407
| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 274 GAAAACACTAGACTCGTTGTTTGGAACCCAC-GTACCGGTCAAACCAGGTGGATCAAACG 332
Query 408 CAG-GAATCGT-A--GGATGTGTG-ATACCT-TTGCTTTTGGATATG-ACAACAGCAAGT 460
||| || | || | ||| ||| | || | ||| | ||||||| | | ||||||||||
Sbjct 333 CAGTGATT-GTTACCGGA-GTGAGGATTTGTATTG-TCTTGGATACGTA-AACAGCAAGT 388
Query 461 CTTCTTGCCTTAATAACTACAAAATCCTGAGGGT-TTGCGAAAAAATAAAAGGAC-AGCA 518
|||||| || | || | |||||||| ||||| | |||| | || || ||| || |
Sbjct 389 CTTCTTACC--A-TAGCCACAAAATCTTGAGG-TATTGCTTTTAT-TACAACGACCAGAA 443
Query 519 -GTTTGAGTA--TGAA----A--TCTTTGAGTTTAGCTCTAATTCATGGAGGGTTCTCGA 569
||||| || |||| | ||| ||| ||||||||| |||||||||||||||| ||
Sbjct 444 TGTTTGTGTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGA 503
Query 570 TG 571
||
Sbjct 504 TG 505
> Ahg933273 jgi|Araly1|933273|scaffold_401261.1
Length=934
Score = 84.2 bits (45), Expect = 2e-15
Identities = 85/104 (82%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 311 TCTATCCCTGCGACGGTTTAATATTATGC-TCCACGAAGCGTAACACTAGACTCGTGGTT 369
||| || |||| |||||||| | |||||| | ||| || | ||| |||| | ||||||
Sbjct 133 TCTCTCACTGCAACGGTTTATTGTTATGCAACAACGGAGAAT-ACAATAGAATAGTGGTT 191
Query 370 TGGAACCCCTGTACCGGTCAAACCAGGTGGATCAAACGCAGGAA 413
||||||||||||||||||||||||| ||||||| ||| || |||
Sbjct 192 TGGAACCCCTGTACCGGTCAAACCAAGTGGATCGAAC-CAAGAA 234
> Ahg907234 jgi|Araly1|907234|Al_scaffold_0002_315
Length=1137
Score = 80.5 bits (43), Expect = 3e-14
Identities = 120/155 (77%), Gaps = 14/155 (9%)
Strand=Plus/Plus
Query 3 GATGATG-CCTCATCTTTCAG-AGGATTTGGTAGAGGAGATACTCTCTAGGGTTCCGGCT 60
||||||| || ||||||| | ||| |||||||||||||||||||||||||||||| |
Sbjct 6 GATGATGTCC-GATCTTTC-GAAGGGTTTGGTAGAGGAGATACTCTCTAGGGTTCCAA-T 62
Query 61 ATA-T-CTCTAAAACGAT-T-ACGATATACTTGCAAACAATGGAA-TGCTTTGTTTAATG 115
| | | |||| | | | | | | ||| |||||||||||||||||| || ||| || |
Sbjct 63 A-ACTTCTCTGAGA-GCTGTGA-GATCTACTTGCAAACAATGGAACTG-TTTAACCAAAG 118
Query 116 ATCAAAGATTCAGTAAGAAGCACCGTGATAAAGCA 150
||| || || | |||||||| |||||||||||
Sbjct 119 ATCCTAGCTTTACAAAGAAGCAATGTGATAAAGCA 153
> Ahg929654 jgi|Araly1|929654|scaffold_302111.1
Length=742
Score = 76.8 bits (41), Expect = 3e-13
Identities = 69/82 (84%), Gaps = 4/82 (5%)
Strand=Plus/Plus
Query 14 ATCTTTCA-GAGGATTTGGTAGAGGAGATACTCTCTAGGGTTCCGGCT-ATATCTCTAAA 71
||||| || | |||| |||||||||||||||||||||||||||||| | | |||| | |
Sbjct 31 ATCTTCCATG-GGATGTGGTAGAGGAGATACTCTCTAGGGTTCCGG-TGACATCTTTGAG 88
Query 72 ACGATTACGATATACTTGCAAA 93
||| ||| ||| ||||||||||
Sbjct 89 ACGGTTAAGATCTACTTGCAAA 110
> Ahg912493 jgi|Araly1|912493|Al_scaffold_0001_2747
Length=1245
Score = 67.6 bits (36), Expect = 2e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 525 GTATGAAATCTTTGAGTTTAGCTCTAATTCATGGAGGGTTCTCGA 569
||| ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 495 GTACGAAATCTATGACTTTAGCTCTAATTCATGGAGGGTTCTCGA 539
> Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645
Length=966
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 27 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 56
||||||||||||||||||||||||||||||
Sbjct 21 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 50
> Ahg951952 jgi|Araly1|951952|scaffold_2600003.1
Length=428
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 24 GGATTTGGTAGAGGAGATACTCTCTAGG 51
||||||||||||||||||||||||||||
Sbjct 47 GGATTTGGTAGAGGAGATACTCTCTAGG 74
> Ahg930648 jgi|Araly1|930648|scaffold_303105.1
Length=428
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 24 GGATTTGGTAGAGGAGATACTCTCTAGG 51
||||||||||||||||||||||||||||
Sbjct 47 GGATTTGGTAGAGGAGATACTCTCTAGG 74
> Ahg930636 jgi|Araly1|930636|scaffold_303093.1
Length=428
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 24 GGATTTGGTAGAGGAGATACTCTCTAGG 51
||||||||||||||||||||||||||||
Sbjct 47 GGATTTGGTAGAGGAGATACTCTCTAGG 74
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43536371214
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5