BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17500.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929603 jgi|Araly1|929603|scaffold_302060.1 174 1e-42
Ahg930837 jgi|Araly1|930837|scaffold_303294.1 171 2e-41
Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 113 3e-24
> Ahg929603 jgi|Araly1|929603|scaffold_302060.1
Length=932
Score = 174 bits (94), Expect = 1e-42
Identities = 155/183 (85%), Gaps = 10/183 (5%)
Strand=Plus/Plus
Query 1123 CAACTATCATTGGTACTTCA--GCGTTGTCGTGCATCAAAGGTGGATGTATGGATAACTG 1180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 563 CAACTCTCATTGGTACTTCAGCGCGTTGTCGTGCATCAAAGGTGGATGTATGGATGACTA 622
Query 1181 ATAAGATTGATACTAAAGAAGTGCAGTGGAGCAAATTCTTTACGGTAGATGTAGACATTG 1240
||||||||||||||||| ||||| |||||||||||| ||||||||||||||| |||| |
Sbjct 623 ATAAGATTGATACTAAACAAGTGGTGTGGAGCAAATTTTTTACGGTAGATGTATACAT-G 681
Query 1241 GTGGTCGTGCTATGTTATCGTAT-GAC---AGTTTCTTCATCGACAAGGAGAAAGGAATG 1296
| |||| | | || |||| | | | |||||| ||||||||||||||||| ||||
Sbjct 682 C-G-TCGTTATTTTTTCTCGTTTTG-CGTGAGTTTCGTCATCGACAAGGAGAAAAAAATG 738
Query 1297 GCC 1299
|||
Sbjct 739 GCC 741
> Ahg930837 jgi|Araly1|930837|scaffold_303294.1
Length=702
Score = 171 bits (92), Expect = 2e-41
Identities = 215/272 (79%), Gaps = 18/272 (7%)
Strand=Plus/Plus
Query 289 TTTCACTGCGATGGTTTATTGTTATGCACCACCAAAGACGATAGACTTGAGGTTTGGAAC 348
|||||||||||||||||||||||||||| |||||| || |||||||| | ||||||||||
Sbjct 215 TTTCACTGCGATGGTTTATTGTTATGCATCACCAAGGATGATAGACTCGTGGTTTGGAAC 274
Query 349 CCTTGTACTGGCC-AAACCAGGCGGGTCCAACACAGTA-TACATTACAAG--ACTAACTC 404
|| ||| ||| ||| ||| || ||| || ||| | | |||||||| | |||||
Sbjct 275 CCGTGTT-TGGGAGAAAATAGGTGGATCCCACTCAGAACTG-ATTACAAGGGAATAACTA 332
Query 405 TGAGTTTGTTCTTGGGTACGTCAACAACAACTCTCGCCATAGCTACAAAATCTTGAGGTA 464
|| |||| ||| || ||| || ||||| ||| | ||||||||||||||||||||||
Sbjct 333 TG--TTTGCTCTAGGATACCAAAATAACAAATCTTGTCATAGCTACAAAATCTTGAGGTG 390
Query 465 CTGGAATTTTTACATGT-CTAACT-ACCGA-GTTAGT-GAGTTCGAAATCTATGACTTTA 520
||||||| ||| || | ||| ||| | ||| || | ||| ||||||||||| ||||
Sbjct 391 GTGGAATTGTTA--TGAACCAACCCACC-ATGTT-GTTGGGTTAGAAATCTATGAGTTTA 446
Query 521 GCTCTGATTCATGGAG-GTTTATTGATGAAGT 551
|||||||||||||||| |||| ||||| ||||
Sbjct 447 GCTCTGATTCATGGAGAGTTT-TTGATAAAGT 477
> Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1
Length=1112
Score = 113 bits (61), Expect = 3e-24
Identities = 208/277 (75%), Gaps = 17/277 (6%)
Strand=Plus/Plus
Query 285 AATCTTTCACTGCGATGGTTTATTGTTATGCACCAC-CA--AAGACGA-TAGACTTGAGG 340
|||||||||||| || |||||| | |||||| |||| | || || | |||||| | |
Sbjct 234 AATCTTTCACTGTGACGGTTTAATATTATGCTCCACTAAGGAAAAC-ACTAGACTCGTTG 292
Query 341 TTTGGAACCCTTGTACTGGCCAAACCAGGCGGGTCCAACACAGT-ATACATTACAAGACT 399
|||||||||| |||| || ||||||||| || || ||| |||| || |||| || |
Sbjct 293 TTTGGAACCCACGTACCGGTCAAACCAGGTGGATCAAACGCAGTGAT-TGTTACCGGAGT 351
Query 400 AACTCTGAGT-TTGTTCTTGGGTACGTCAACAACAA--C-TCTCGCCATAGCTACAAAAT 455
| | || ||| |||||| ||||| |||| ||| | ||| ||||||| |||||||
Sbjct 352 GAGGATTTGTATTG-TCTTGGATACGTAAACAGCAAGTCTTCTTACCATAGCCACAAAAT 410
Query 456 CTTGAGGTACTGGAATTT-TTAC-ATGTCTA-ACT-ACCGAGTTAGTGAGTTCGAAATCT 511
||||||||| | | ||| |||| | | | | | | | ||| |||| || || ||||
Sbjct 411 CTTGAGGTA-TTGCTTTTATTACAACGACCAGAATGTTTGTGTTGGTGAATTTGAGATCT 469
Query 512 ATGACTTTAGCTCTGATTCATGGAGGTTTATTGATGA 548
|||||||||||||||||||||||||| || |||||||
Sbjct 470 ATGACTTTAGCTCTGATTCATGGAGGGTTCTTGATGA 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5