BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17530.1
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 658 0.0
Ahg899807 jgi|Araly1|899807|Al_scaffold_0004_457 647 0.0
Ahg479229 jgi|Araly1|479229|fgenesh2_kg.3__1930__AT3G17530.1 446 3e-124
Ahg904690 jgi|Araly1|904690|Al_scaffold_0003_1818 67.6 2e-10
> Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1
Length=1112
Score = 658 bits (356), Expect = 0.0
Identities = 720/890 (81%), Gaps = 48/890 (5%)
Strand=Plus/Plus
Query 301 ATCTTTCACTGCGACGGTTTGATATTATGCACTACGACGGAAAGCACTGGACTTGTGGTT 360
||||||||||| |||||||| ||||||||| | || | ||||| |||| |||| || |||
Sbjct 235 ATCTTTCACTGTGACGGTTTAATATTATGCTCCACTAAGGAAAACACTAGACTCGTTGTT 294
Query 361 TGGAACCCGTGTACCGGTGAAATTAGATGTATCAAACCCAGAAT-ATT-TTACCGGTGTA 418
|||||||| |||||||| ||| || || ||||||| ||| | ||| ||||||| ||
Sbjct 295 TGGAACCCACGTACCGGTCAAACCAGGTGGATCAAACGCAG--TGATTGTTACCGGAGTG 352
Query 419 ATGATAGGTA-TGCTCTTGGTTACGGAAACAGCAAATCTTCTTGCCATAGCTACAAAATC 477
| ||| ||| || |||||| |||| ||||||||| ||||||| ||||||| ||||||||
Sbjct 353 AGGATTTGTATTG-TCTTGGATACGTAAACAGCAAGTCTTCTTACCATAGCCACAAAATC 411
Query 478 TTGAGGTCTTGCTGTTATTACGTCGACCAGAACCTCAGCCTCATG-GCTGCTGAGTTTGA 536
||||||| ||||| ||||||| ||||||||| | | | || | || ||| |||||
Sbjct 412 TTGAGGTATTGCTTTTATTACAACGACCAGAA--T--G--T-TTGTGTTGGTGAATTTGA 464
Query 537 GATCTATGACTTTAGCACTGATTCTTGGAGAGATCTTGGTGACAT-CACTCGTGACAT-G 594
|||||||||||||||| ||||||| ||||| | ||||| |||| | ||||| | || | |
Sbjct 465 GATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGATGAC-TGCACTCATAAC-TGG 522
Query 595 ATCGTATATTC--CAGTGGCGTGTCTTTGAAAGGAAATACTTACTGGGTTTCTGGATCTA 652
| | ||||| || |||| |||||||||||||||||||||||| ||| ||||| |
Sbjct 523 GGC-T-TATTCTGCAATGGCATGTCTTTGAAAGGAAATACTTACTTTGTTGCTGGA-GAA 579
Query 653 -AAGAAAAAGGTTTTTTCATGCGGTATTTTGATTT-TAGCAAAGAG-GTATTTGGGCGTC 709
|||||| ||| |||||||||| |||||||||||| || | |||| | ||||| |||||
Sbjct 580 CAAGAAACAGGATTTTTCATGCTGTATTTTGATTTCAAG-ACAGAGAG-ATTTGAGCGTC 637
Query 710 TCCCTCTTCCATATCAGAGTTTTAATGCT-AACCATACCGCGGCTCTATCAGCTGTT-GG 767
|||||||||| ||||| |||||| || || || | || |||| |||||||| |||| ||
Sbjct 638 TCCCTCTTCCGTATCAAAGTTTTGATTCTGAA-GAAACTGCGGTTCTATCAGTTGTTAGG 696
Query 768 GAACGAAAAAATCGCCGTGTTGCAACAAAAAATTCTTGCAATGTCAGATGAGATGAGGAT 827
||| |||||| | || ||||| || || || |||| || ||||| |||||||||||||
Sbjct 697 GAA-GAAAAACTTGCGGTGTTACAGCAGAATATTCAAGCGTTGTCAAATGAGATGAGGAT 755
Query 828 TTGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGTCGTGGAGCAACTTTC-TCTTAA 886
|||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 756 ATGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGACGTGGAGCAACTT-CGTCTTAA 814
Query 887 CAGTGGATTATGGTAAATTTAATTTACCATGTCT-AGTGAATGTGACAAGCTTCTTGTTG 945
|||||||||||| || ||||| ||||||| || | | | |||||| ||||||||||||||
Sbjct 815 CAGTGGATTATGATAGATTTAGTTTACCAAGTGTGAAT-AATGTGTCAAGCTTCTTGTTG 873
Query 946 GACGAGGAGAATAAAGTGGCAGTGTGTTCTGAC-GTAGACACGAAAGATGGACTTAGGAG 1004
||||||||||||||||||||| |||||| ||| | ||||| | | |||| | || ||
Sbjct 874 GACGAGGAGAATAAAGTGGCATTGTGTTGTGATAG-AGACATGGATGATGAAGATAAGAC 932
Query 1005 CAGAATCTACATTGTGGGAAAGGATTTC-TATAAAGAAGTTTTTAAAGATAC-A-AG-GG 1060
|||| |||||||||| ||| || | | | ||||||||||||| |||||| || | | ||
Sbjct 933 CAGAGTCTACATTGTTGGAGAG-ACTACATATAAAGAAGTTTATAAAGAGACTATAAAGG 991
Query 1061 GATCAGATAACAATTGGCCACTTCTCCTCTGTTATGTTCCTAGTTTGGTT-AGCATTCAG 1119
|||| || ||||||||||||||||||| ||||| |||| || |||||| | ||||||
Sbjct 992 GATCCCATTTCAATTGGCCACTTCTCCTCAGTTATCTTCCAAGCTTGGTTCA-CATTCAC 1050
Query 1120 GAAAATATACCCAACAAGGCAGAAGAAAATGAAATCAA-AGGAGGTTAGT 1168
||||||| |||||| ||| || |||||| |||| ||| | |||||||||
Sbjct 1051 GAAAATACACCCAA-AAGACAAAAGAAAGGGAAA-CAAGAAGAGGTTAGT 1098
> Ahg899807 jgi|Araly1|899807|Al_scaffold_0004_457
Length=1125
Score = 647 bits (350), Expect = 0.0
Identities = 784/989 (79%), Gaps = 48/989 (5%)
Strand=Plus/Plus
Query 202 GTCAATCTCCAAGGGATTAACAATAGA-TTTGATCCAAGTATGGAGGTTACAGGTAAACT 260
||| ||| ||| || ||| |||| | | |||||||| ||| ||| || | || |||||
Sbjct 160 GTCGATCACCATGGAATTCACAACA-ACGTTGATCCATCTATCGAGTTTTCTGGAAAACT 218
Query 261 CATCAAG-CTAAATGATTCAAAAGGTGTCGATATTTCTGCTATCTTTCACTGCGACGGTT 319
| | || ||||| || ||| ||| | | | || ||| ||||| ||||| || ||||
Sbjct 219 TAGC-AGTCTAAAGGACTCAGAAGATTTAAAAATATCTAAAATCTTCCACTGTGAGGGTT 277
Query 320 TGATATTATGCACTAC-GACGGAAAGCACTGGACTTGTGGTTTGGAAC-CCGTGTACCGG 377
| ||||||||| |||| | ||||| |||| | |||||||||||| || || |||||||
Sbjct 278 TAATATTATGCTCTACTAAGGGAAA-CACTAGCCTTGTGGTTTGGGACTCC-AGTACCGG 335
Query 378 TGAAATTAGATGTATCAAACCCAGAATAT-TTTACCGGTGTAATGA-TAGGTATGCTCTT 435
||||| | | |||| ||| |||| | ||| |||| | |||| || |||||| ||
Sbjct 336 TGAAACCCGGCGGATCAGACCGAGAA-CTCGTTATCGGTATGATGATTA-CTATGCT-TT 392
Query 436 -GGTTACGGAAACAGCAAATCTTCTTGCCATAGCTACAAAATCTTGAGGTCTTGCTGTTA 494
|| |||| ||||||||| |||||| ||||||||| |||||||||||||||||||| |||
Sbjct 393 AGGATACGTAAACAGCAAGTCTTCTGGCCATAGCTTCAAAATCTTGAGGTCTTGCTATTA 452
Query 495 TTACGTCGACCAGAACCTCAGCCTCATGGCTGCTGAGTTTGAGATCTATGACTTTAGCAC 554
| | ||||||||| | | | || ||||||||||||||||||||| || ||| |
Sbjct 453 TGAAAACGACCAGAA----A--CAAAGGGTTGCTGAGTTTGAGATCTATGAGTTAAGCTC 506
Query 555 TGATTCTTGGAGAGATCTTGGTGACATCACTCGTGAC-ATGATCGTATATTCCAGTGGC- 612
||| |||||||| | ||||| | || ||||||||||| ||| | |||| || |||||||
Sbjct 507 TGACTCTTGGAGGGTTCTTGATTACTTCACTCGTGACTATGGT-GTATTTTGCAGTGGCA 565
Query 613 GTGTCTTTGAAAGGAAATACTTACTGGGTTTCTGGATCTAAAGAAAAAGGTTTTTTCATG 672
| ||||||||||||||||||||| |||||| ||||| ||||||||| || ||||||||
Sbjct 566 G-GTCTTTGAAAGGAAATACTTATTGGGTTGCTGGAGATAAAGAAAATGGCCTTTTCATG 624
Query 673 CGGTATTTTGATTTTAGCAA-AGAG-GTATTTGGGCGTCTCCCTCTTCCATATCAGAGTT 730
|||||||||||| | ||| ||| | |||||||||| | |||||||| | | | ||||
Sbjct 625 TTGTATTTTGATTTCA-CAACGGAGAG-ATTTGGGCGTTTTCCTCTTCCGTTTGAAAGTT 682
Query 731 TTAATGCT-AACCATACCGCGGCTCTATCAGCTGTT-GGGAACGAAAAAATCGCCGTGTT 788
||||| || || |||||||||||||||||| |||| ||||| |||||| || | |||||
Sbjct 683 TTAATCCTGAA-GATACCGCGGCTCTATCAGTTGTTAGGGAA-GAAAAACTCTCGGTGTT 740
Query 789 GCAACAAAAAATTCTTGCA-ATGTCAGATGAGATGAGGATTTGGGTCACCAATAAGATTG 847
|| || || ||||||| | | ||| ||||||||| ||| ||| | ||||||||||| |
Sbjct 741 ACATCAGAAGATTCTTG-ATTTTTCAAATGAGATGAAGATATGGTTGACCAATAAGATCG 799
Query 848 ATGAGGCCAAAGACTTGTCGTGGAGCAACTTTC-TCTTAACAGTGGATTATGGTAAATTT 906
|||| ||| ||| ||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 800 ATGAAACCATAGAATTGTCGTGGAGCAAC-TTCGTCTTAACAGTGGATTATGATAAATTT 858
Query 907 AATTTA-CCATGTC-TAGTGAATGTGACAAGCTTCTTGTTGGACGAGGAGAATAAAGTGG 964
|||||| ||| | | | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 859 AATTTACCCA-G-CGTGGTGAATGTGACAAGTTTCTTGTTGGACGAGGAGAATAAAGTGG 916
Query 965 CAGTGTGTTCTGACGTAGACACGAAAGATGGACT-TAGGAGCAGAATCTACATTGTGGGA 1023
|| |||||||||| | |||| | | |||| | | || || |||| ||||| |||| |||
Sbjct 917 CACTGTGTTCTGATATCGACATGGATGATGAA-TATAAGACCAGAGTCTACGTTGTTGGA 975
Query 1024 AAGGATTTCTATAAAGAAGTTTTTAAAGA---TACAAGGGGATCAGATAACAATTGGCCA 1080
||||| | |||||| |||| | |||||| ||||| || ||| ||| ||||||||||
Sbjct 976 GAGGATATATATAAACAAGTCTATAAAGACACTACAAAGGCATCTTATATCAATTGGCCA 1035
Query 1081 CTTCTCCTCTGTTATGTTCCTAGTTTGGTT-AGCATTCAGGAAAATATACCCAACAAGGC 1139
|||||| || ||||||||| |||||||| | |||| || |||||| || ||| |||||
Sbjct 1036 CTTCTCATCAATTATGTTCCAAGTTTGGTGCA-CATTAAGAAAAATACACTCAA-AAGGC 1093
Query 1140 AGAAGAAAATGAAATCAAAGGAGGTTAGT 1168
| ||||||| |||||||| ||||||||||
Sbjct 1094 AAAAGAAAAGGAAATCAAGGGAGGTTAGT 1122
> Ahg479229 jgi|Araly1|479229|fgenesh2_kg.3__1930__AT3G17530.1
Length=1278
Score = 446 bits (241), Expect = 3e-124
Identities = 293/318 (92%), Gaps = 4/318 (1%)
Strand=Plus/Plus
Query 1 ATGATGATTTCCGATCTTCCACACGATTTGGAATCGGAAATACTCTCTAGGGTTCCGGCG 60
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 ATGATGATTTCCGATCTTCCACACGATTTGGAATCGGAAATACTTTATAGGGTTCCGGCG 60
Query 61 AAGTCCCTAGCAAAATGGAAGACTACTTGCAAACGATGGTATGCTTTATTCAGAGATCCG 120
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AAGTCTCTAGCAAAATGGAAGACTACTTGCAAACGATGGTACGCTTTATTCAGAGATCCG 120
Query 121 AGTTTCGTCAAGAAGAACTTTGATAAAGCAGGAGGAAGGGAAATGATAGTACTGATGAAT 180
|| ||||||||||||||||||| |||||||| | |||||||||||| ||||||||||||
Sbjct 121 AGATTCGTCAAGAAGAACTTTGGTAAAGCAGCAACAAGGGAAATGATCGTACTGATGAAT 180
Query 181 TCT-AGGGTTTATTCAAACAGCGTCAATCTCCAAGGGATTAACAATAGATTTGATCCAAG 239
| | ||| ||||||||||||||||||||||||||||||||||| | ||| |||||||| |
Sbjct 181 T-TGAGGCTTTATTCAAACAGCGTCAATCTCCAAGGGATTAACCACAGAGTTGATCCA-G 238
Query 240 -TATGGAGGTTACAGGTAAACTCATCAAGCTAAATGATTCAAAAGGTGTCGATATTTCTG 298
|||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||
Sbjct 239 CTATGGAGGTTACAGGTAAACTCATCAAGCTAAATGATTCAGAAGCTGTTGACATTTCTA 298
Query 299 CTATCTTTCACTGCGACG 316
||||||| |||||||||
Sbjct 299 ATATCTTTTACTGCGACG 316
Score = 409 bits (221), Expect = 3e-113
Identities = 340/392 (87%), Gaps = 29/392 (7%)
Strand=Plus/Plus
Query 935 GCTTCTTGTTGGACGAGGAGAATAAAGTGGCAGTGTGTTCTGACGTAGACACGAAAGATG 994
||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 827 GCTTCTTGTTGGAAGAGGAGAATGAAGTGGCAGTGTGTTCTGACGTAGACATGAAAGATG 886
Query 995 GACTTAGGAGCAGAATCTACATTGTGGGAAAGG----AT-T-TCTATAAAGAAGTTTTTA 1048
||| ||||||||||||||||||||| ||||||| || | | ||||||||||||| ||
Sbjct 887 GACGTAGGAGCAGAATCTACATTGTTGGAAAGGATATATATATATATAAAGAAGTTTATA 946
Query 1049 AAG--A-TACAAGGGGATCAGATAACAATTGGCCACTTCTCCTCTGTTATGTTCCTAGTT 1105
||| | ||||| ||||||||||| ||||||||||||||||||| |||||||||| || |
Sbjct 947 AAGAAAGTACAAAGGGATCAGATATCAATTGGCCACTTCTCCTCAGTTATGTTCCAAGCT 1006
Query 1106 TGGTTAGCATTCAGGAAAATATACCCAACAAGGCAGAAGAAAATGAAATC---A--A--- 1157
|||||| ||||||| |||||||| |||| ||||||||||||||||||||| | |
Sbjct 1007 TGGTTAACATTCAGAAAAATATATCCAAAAAGGCAGAAGAAAATGAAATCAAAAGGATGT 1066
Query 1158 -A--GG-A-G--G-TTAGTCAATTATTTTCTATTTAGTTTAGAAACACGA-AGGAACTGG 1208
| || | | | ||||||||| ||||||| |||||||||||||||| | || ||||||
Sbjct 1067 TAGTGGAATGAAGATTAGTCAATGATTTTCTTTTTAGTTTAGAAACAC-AGAGTAACTGG 1125
Query 1209 ATGAAGTTTTTCACATGTCCTTCTTTTACTTTTGAAATTGGACGGTTGGTTTATTGATCT 1268
||||||||||| | |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1126 ATGAAGTTTTT--CTTGTCCTTCTTTTGCTTTTGAAATTGGATGGTTGGTTTATTGATCT 1183
Query 1269 TTACACAAATACAGTAATGTTCTGCTTATATG 1300
||||||||||||| ||||||||||||||||||
Sbjct 1184 TTACACAAATACATTAATGTTCTGCTTATATG 1215
Score = 281 bits (152), Expect = 8e-75
Identities = 227/261 (87%), Gaps = 14/261 (5%)
Strand=Plus/Plus
Query 350 GACTTGTGGTTTGGAA-CCCGTGTACCGGTGAAATTAGATGTATC-AAACCCAGAATATT 407
|||||||||||||||| ||| |||||| |||||| |||||||||| || ||||||| ||
Sbjct 316 GACTTGTGGTTTGGAATCCC-TGTACCTGTGAAACTAGATGTATCTAACCCCAGAAAATG 374
Query 408 TTACCGGTGTAATGATAGGTATGCTCTTGGTTACGGAAACAGCAAATCTTCTTGCCATAG 467
||||| | ||||||||||||||||||||| ||||||| |||| | | |||||||||||
Sbjct 375 TTACCAGAATAATGATAGGTATGCTCTTGGATACGGAAGCAGC--A-CATCTTGCCATAG 431
Query 468 CTACAAAATCTTGAGGTCTTGC-TGTTATTACGTCGACCAGAACCTCAGCCTCATGGCTG 526
|||||||||||||||||| ||| | ||||||| |||||| || | |||||||| ||
Sbjct 432 CTACAAAATCTTGAGGTCGTGCAT-TTATTACAACGACCA-AA----A-CCTCATGGATG 484
Query 527 CTGAGTTTGAGATCTATGACTTTAGCACTGATTCTTGGAGAGATCTTGGTGACATCACTC 586
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 485 CTGAGTTTGAGATCTATGACTTTAGCACTAATTCTTGGAGAGATCTTGGTTACATCACTC 544
Query 587 GTGACATGATCGTATATTCCA 607
||||| || |||||| |||||
Sbjct 545 GTGACTTGGTCGTATTTTCCA 565
Score = 254 bits (137), Expect = 2e-66
Identities = 225/266 (85%), Gaps = 12/266 (5%)
Strand=Plus/Plus
Query 641 TTTCTGGATCTAAAGAAAAAGGTTTTTTCATGCGGTATTTTGATTT-TAGCAAAGAG-GT 698
|||||||| |||||| || || |||||| ||| |||||||||||| || | |||| |
Sbjct 566 TTTCTGGAAATAAAGATAATGGCTTTTTCTTGCAGTATTTTGATTTCAAG-ACAGAGAG- 623
Query 699 ATTTGGGCGTCTCCCTCTTCCATATCAGAGTTTTAATGCT-AACCATACCGCGGCTCTAT 757
|||||||||||||||||||||||| ||||||||||||||| || ||||||| |||||||
Sbjct 624 ATTTGGGCGTCTCCCTCTTCCATACCAGAGTTTTAATGCTGAA-GATACCGCCGCTCTAT 682
Query 758 CAGCT-GTTGGGAACGAAAAAATCGCCGTGTTGCAACAAAAAATTCTTGCAATGTCAGAT 816
||| | |||||| ||||||| | | ||||| || || | ||||||||| | ||||||
Sbjct 683 CAG-TCGTTGGGGACGAAAAGCTTGTGGTGTTACACCAGAGTATTCTTGCATTTTCAGAT 741
Query 817 GAGATGAGGATTTGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGTCGTGGAGC-A- 874
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 742 GAGATGAGGATTTGGGTCACAAATAAGATTGATGAGGCCAAAGACTTGTCGTGGAGGGAG 801
Query 875 --ACTTTCTCTTAACAGTGGATTATG 898
|||| |||| ||||||||||||||
Sbjct 802 CGACTTCCTCTGAACAGTGGATTATG 827
> Ahg904690 jgi|Araly1|904690|Al_scaffold_0003_1818
Length=1221
Score = 67.6 bits (36), Expect = 2e-10
Identities = 56/65 (86%), Gaps = 3/65 (5%)
Strand=Plus/Plus
Query 818 AGATGAGGATTTGGGTCACC-A-A-TAAGATTGATGAGGCCAAAGACTTGTCGTGGAGCA 874
|||| | ||| ||||| ||| | | |||||| | ||||||||||||||||||||||||||
Sbjct 776 AGATAAAGATATGGGTGACCGATACTAAGATCGGTGAGGCCAAAGACTTGTCGTGGAGCA 835
Query 875 ACTTT 879
|||||
Sbjct 836 ACTTT 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212072265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5