BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17540.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 1299 0.0
Ahg899807 jgi|Araly1|899807|Al_scaffold_0004_457 841 0.0
Ahg479229 jgi|Araly1|479229|fgenesh2_kg.3__1930__AT3G17530.1 220 1e-56
> Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1
Length=1112
Score = 1299 bits (703), Expect = 0.0
Identities = 844/912 (93%), Gaps = 10/912 (1%)
Strand=Plus/Plus
Query 282 GATATCAGAAGATTTGACAATAACCAAAATCTTTCACTGTGACGGTTTAATATTATGCTC 341
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GATATCAGAAGATTTGAAAATAACCAAAATCTTTCACTGTGACGGTTTAATATTATGCTC 266
Query 342 CACTAAGGAAAACACTAGACTCGTTGTTTGGAACCCATGTACCGGTCAAACCAGGTGGAT 401
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 267 CACTAAGGAAAACACTAGACTCGTTGTTTGGAACCCACGTACCGGTCAAACCAGGTGGAT 326
Query 402 CAAACCCAGCAAACGTTACCGTAGTGATGATTCGTATTGTCTTGGATACGTAAACAGCAA 461
||||| ||| | ||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 327 CAAACGCAGTGATTGTTACCGGAGTGAGGATTTGTATTGTCTTGGATACGTAAACAGCAA 386
Query 462 GTCTTCTTACCACAACTACAAAATCTTGAGGTATTGCTTTTATTACAACGACCAGGATGC 521
|||||||||||| | | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 387 GTCTTCTTACCATAGCCACAAAATCTTGAGGTATTGCTTTTATTACAACGACCAGAATGT 446
Query 522 TTGTGTTAGTGAATTTGAGATCTATGACTTTAGCTCTGAATCATGGAGGGTTCTTGATGA 581
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 447 TTGTGTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGATGA 506
Query 582 CTACTGCACTCGTGAA-TGGGGCTTATTCTGCCATGGCATGTCTTTGAAAGGAAATACTT 640
|| |||||| | || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 507 CT---GCACTCAT-AACTGGGGCTTATTCTGCAATGGCATGTCTTTGAAAGGAAATACTT 562
Query 641 ACTTTGTTGCTGGAGAAAAAGAAACAGGCTTTTTCATGCTGTACTTTGATTTCAAGACAG 700
||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 563 ACTTTGTTGCTGGAGAACAAGAAACAGGATTTTTCATGCTGTATTTTGATTTCAAGACAG 622
Query 701 AGAGATTTGAGCGTCTCCCTCTTCCGTATCAGAGTTTTGATTCTGAAGATACCGCTGTTT 760
||||||||||||||||||||||||||||||| ||||||||||||||||| || || |||
Sbjct 623 AGAGATTTGAGCGTCTCCCTCTTCCGTATCAAAGTTTTGATTCTGAAGAAACTGCGGTTC 682
Query 761 TATCAATTGTTGGGGGAGAAAAACTTGCGGTGTTACATCAAAATATTCAATCGTTTTCAA 820
||||| ||||| ||| ||||||||||||||||||||| || ||||||||| |||| ||||
Sbjct 683 TATCAGTTGTTAGGGAAGAAAAACTTGCGGTGTTACAGCAGAATATTCAAGCGTTGTCAA 742
Query 821 ATGAGATGAGGATATGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGACATGGAGCA 880
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 743 ATGAGATGAGGATATGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGACGTGGAGCA 802
Query 881 ACTTCTTCTTAGCAGTGGATTATGATATATTTAACTTACCAAGTGTGAATAATGTGACAA 940
||||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||
Sbjct 803 ACTTCGTCTTAACAGTGGATTATGATAGATTTAGTTTACCAAGTGTGAATAATGTGTCAA 862
Query 941 GCTTCTTGTTGGACGAGGAGAATAAAGTGGCAGTGTGTTGTGATAGACACATAGATGATG 1000
|||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||
Sbjct 863 GCTTCTTGTTGGACGAGGAGAATAAAGTGGCATTGTGTTGTGATAGAGACATGGATGATG 922
Query 1001 AAGATAAGACCAGAATCTACATTGTTGGAGTTGA-T-CTTTATAAAGAAGTTTATAAAGA 1058
|||||||||||||| ||||||||||||||| || | | | |||||||||||||||||||
Sbjct 923 AAGATAAGACCAGAGTCTACATTGTTGGAGA-GACTACAT-ATAAAGAAGTTTATAAAGA 980
Query 1059 GAGGACAAAGGGAGCTCATTTCAATTGGCCACTTCTCATCAGTTATCTTCCAAGCTTGGT 1118
|| | ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 981 GACTATAAAGGGATCCCATTTCAATTGGCCACTTCTCCTCAGTTATCTTCCAAGCTTGGT 1040
Query 1119 TCATATTCAGGAAAA-ATACCCAAAAGACAAAAGAAAAGGAAACAAGAGGAGGTTAGTTA 1177
||| ||||| ||||| | ||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1041 TCACATTCACGAAAATACACCCAAAAGACAAAAGAAAGGGAAACAAGAAGAGGTTAGTTA 1100
Query 1178 AACGAATTACTT 1189
||||||||||||
Sbjct 1101 AACGAATTACTT 1112
Score = 257 bits (139), Expect = 1e-67
Identities = 152/158 (96%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAAGACGATGGTGATTTCGGATCTTCCACACGAAATAGAATCGGAAATACTCTCT 60
|||||||||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGAGAAAGAAGATGATGATTTCTGATCTTCCACACGAACTAGAATCGGAAATACTCTCT 60
Query 61 AGGGTTCCGACCAAGTCTCTAGCAAAGTTGCATACTACATGCAAACGATGGTACGCTTTA 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AGGGTTCCGACCAAGTCTCTAGCAAAGTTGCAAACTACATGCAAACGATGGTACGCTTTA 120
Query 121 TTCAGAGATCCGAGATTCGTGAAGAAGAACTTTGGTAA 158
|||||||||||||||||||||||||||||||||| |||
Sbjct 121 TTCAGAGATCCGAGATTCGTGAAGAAGAACTTTG-TAA 157
> Ahg899807 jgi|Araly1|899807|Al_scaffold_0004_457
Length=1125
Score = 841 bits (455), Expect = 0.0
Identities = 819/989 (83%), Gaps = 48/989 (5%)
Strand=Plus/Plus
Query 213 CGATCTCCATGGAATTCTCAACAGCGGTGATCCATCTCTCGAGTTTACAAGTAAACTTAG 272
||||| ||||||||||| ||||| || |||||||||| |||||||| | | ||||||||
Sbjct 162 CGATCACCATGGAATTCACAACAACGTTGATCCATCTATCGAGTTTTCTGGAAAACTTAG 221
Query 273 CAACCTAAA-GATATCAGAAGATTTGACAATAACCAAAATCTTTCACTGTGACGGTTTAA 331
|| ||||| || ||||||||||| | |||| | |||||||| |||||||| |||||||
Sbjct 222 CAGTCTAAAGGA-CTCAGAAGATTTAAAAATATCTAAAATCTTCCACTGTGAGGGTTTAA 280
Query 332 TATTATGCTCCACTAAGGAAAACACTAGACTCGTTGTTTGGAAC-CCATGTACCGGTCAA 390
|||||||||| ||||||| ||||||||| || || |||||| || ||| |||||||| ||
Sbjct 281 TATTATGCTCTACTAAGGGAAACACTAGCCTTGTGGTTTGGGACTCCA-GTACCGGTGAA 339
Query 391 ACCAGGTGGATCAAACCCAGCAA-ACGTTA-CCGTAGTGATGATT-CGTATTGTC-TT-G 445
||| || |||||| ||| || || ||||| | ||| |||||||| | || || | || |
Sbjct 340 ACCCGGCGGATCAGACCGAG-AACTCGTTATCGGTA-TGATGATTAC-TA-TG-CTTTAG 394
Query 446 GATACGTAAACAGCAAGTCTTCTTACCACAACTACAAAATCTTGAGGTATTGCTTTTATT 505
||||||||||||||||||||||| ||| | || |||||||||||||| ||||| ||||
Sbjct 395 GATACGTAAACAGCAAGTCTTCTGGCCATAGCTTCAAAATCTTGAGGTCTTGCTATTATG 454
Query 506 ACAACGACCAGGATGC-TTGTGTTAG-TGAATTTGAGATCTATGACTTTAGCTCTGAATC 563
| |||||||| || | | ||| | ||| |||||||||||||| || |||||||| ||
Sbjct 455 AAAACGACCA-GAAACAAAGGGTT-GCTGAGTTTGAGATCTATGAGTTAAGCTCTGACTC 512
Query 564 ATGGAGGGTTCTTGATGACTACTGCACTCGTGA--ATGGGGCTTATTCTGCCA-TGGCAT 620
||||||||||||||| |||| ||||||||| |||| | |||| || || |||||
Sbjct 513 TTGGAGGGTTCTTGAT---TACTTCACTCGTGACTATGGTG--TATTTTG-CAGTGGCAG 566
Query 621 GTCTTTGAAAGGAAATACTTACTT-TGTTGCTGGAGAAAAAGAAACA-GGCTTTTTCATG 678
||||||||||||||||||||| || ||||||||||| ||||||| | ||| ||||||||
Sbjct 567 GTCTTTGAAAGGAAATACTTA-TTGGGTTGCTGGAGATAAAGAAA-ATGGCCTTTTCATG 624
Query 679 CTGTACTTTGATTTCA-AGACAGAGAGATTTGAGCGTCTCCCTCTTCCGTATCAGAGTTT 737
|||| |||||||||| | || |||||||||| |||| | |||||||||| | | |||||
Sbjct 625 TTGTATTTTGATTTCACA-ACGGAGAGATTTGGGCGTTTTCCTCTTCCGTTTGAAAGTTT 683
Query 738 TGATTCTGAAGATACCGCTGTTTTATCAATTGTTGGGGGAGAAAAACT-TGCGGTGTTAC 796
| || ||||||||||||| | | ||||| ||||| ||| ||||||||| | |||||||||
Sbjct 684 TAATCCTGAAGATACCGCGGCTCTATCAGTTGTTAGGGAAGAAAAACTCT-CGGTGTTAC 742
Query 797 ATCAAAATATTCAATCG--TTTTCAAATGAGATGAGGATATGGGTCACCAATAAGATTGA 854
|||| || |||| | | |||||||||||||||| ||||||| | ||||||||||| ||
Sbjct 743 ATCAGAAGATTC--TTGATTTTTCAAATGAGATGAAGATATGGTTGACCAATAAGATCGA 800
Query 855 TGAGGCCAAAGACTTGACATGGAGCAACTTCTTCTTAGCAGTGGATTATGATATATTTAA 914
||| ||| ||| ||| | |||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 801 TGAAACCATAGAATTGTCGTGGAGCAACTTCGTCTTAACAGTGGATTATGATAAATTTAA 860
Query 915 CTTACCAAGTGTGAAT-AATGTGACAAGCTTCTTGTTGGACGAGGAGAATAAAGTGGCAG 973
||||| || ||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 861 TTTACCCAGCGTG-GTGAATGTGACAAGTTTCTTGTTGGACGAGGAGAATAAAGTGGCAC 919
Query 974 TGTGTTGTGATAGAC-ACATAGATGATGAAGATAAGACCAGAATCTACATTGTTGGAGTT 1032
|||||| ||||| | |||| ||||||||| ||||||||||| ||||| |||||||||
Sbjct 920 TGTGTTCTGATAT-CGACATGGATGATGAATATAAGACCAGAGTCTACGTTGTTGGAGAG 978
Query 1033 GATCTTTATAAAGAAGTTTATAAAGAGAGGACAAAGGGAGCTCATTTCAATTGGCCACTT 1092
||| | |||||| |||| |||||||| | ||||||| | || || ||||||||||||||
Sbjct 979 GATATATATAAACAAGTCTATAAAGACACTACAAAGGCATCTTATATCAATTGGCCACTT 1038
Query 1093 CTCATCAGTTATCTTCCAAGCTTGGTTCATATTCAGGAAAAATAC-C-CAAAAGACAAAA 1150
||||||| |||| ||||||| ||||| || ||| || |||||||| | |||||| |||||
Sbjct 1039 CTCATCAATTATGTTCCAAGTTTGGTGCACATTAAG-AAAAATACACTCAAAAGGCAAAA 1097
Query 1151 GAAAAGGAAA-CAAGAGGAGGTTAGTTAA 1178
|||||||||| |||| |||||||||||||
Sbjct 1098 GAAAAGGAAATCAAG-GGAGGTTAGTTAA 1125
Score = 154 bits (83), Expect = 1e-36
Identities = 107/118 (91%), Gaps = 4/118 (3%)
Strand=Plus/Plus
Query 43 GAATCGGAAATACTCTCTAGGGTTCCGACCAAGTCTCTAGCAAAGTTGC-ATACTACATG 101
||||| |||||||||||||||||||||||||||||||||||||| || | | ||||| ||
Sbjct 31 GAATCCGAAATACTCTCTAGGGTTCCGACCAAGTCTCTAGCAAAATTTCGA-ACTACTTG 89
Query 102 CAAACGATGGTACGCTTTATTCAGAGATCCGAGA-TTCGTGAAGAAGAACTTTGGTAA 158
|||||||||||||||||||||||||||||| | | ||| | |||||||||||||||||
Sbjct 90 CAAACGATGGTACGCTTTATTCAGAGATCCAA-ACTTCATCAAGAAGAACTTTGGTAA 146
> Ahg479229 jgi|Araly1|479229|fgenesh2_kg.3__1930__AT3G17530.1
Length=1278
Score = 220 bits (119), Expect = 1e-56
Identities = 259/324 (80%), Gaps = 19/324 (6%)
Strand=Plus/Plus
Query 13 ATGGTGATTTCGGATCTTCCACACGAAATAGAATCGGAAATACTCTCTAGGGTTCCGACC 72
||| ||||||| |||||||||||||| | |||||||||||||| | |||||||||| |
Sbjct 1 ATGATGATTTCCGATCTTCCACACGATTTGGAATCGGAAATACTTTATAGGGTTCCGGCG 60
Query 73 AAGTCTCTAGCAAAGTTGCATACTACATGCAAACGATGGTACGCTTTATTCAGAGATCCG 132
|||||||||||||| | | | ||||| |||||||||||||||||||||||||||||||||
Sbjct 61 AAGTCTCTAGCAAAATGGAAGACTACTTGCAAACGATGGTACGCTTTATTCAGAGATCCG 120
Query 133 AGATTCGTGAAGAAGAACTTTGGTAAATCAG-AA-A-GG-AGGTTGAT-GTTAC--ATAG 185
|||||||| |||||||||||||||||| ||| || | || | | ||| || || || |
Sbjct 121 AGATTCGTCAAGAAGAACTTTGGTAAAGCAGCAACAAGGGAAAT-GATCGT-ACTGAT-G 177
Query 186 TAATTTC-GGCGTTTATA-AAATTACCGACGATCTCCATGGAATTCTCAACAGCGGTGAT 243
||||| ||| ||||| ||| | || | ||||||| || ||| | |||| | ||||
Sbjct 178 -AATTTGAGGC-TTTATTCAAAC-AGCGTCAATCTCCAAGGGATTAACCACAGAGTTGAT 234
Query 244 CCATCTCTCGAGTTTACAAGTAAACTTAGCAACCTAAA-GATATCAGAAGAT-TTGACAA 301
||| || | ||| ||||| ||||||| | ||| ||||| ||| ||||||| | ||||||
Sbjct 235 CCAGCTATGGAGGTTACAGGTAAACTCATCAAGCTAAATGAT-TCAGAAGCTGTTGACAT 293
Query 302 TAACCAAAATCTTTCACTGTGACG 325
| | || |||||| |||| ||||
Sbjct 294 TT-CTAATATCTTTTACTGCGACG 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5