BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17550.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929608 jgi|Araly1|929608|scaffold_302065.1 1386 0.0
Ahg318714 jgi|Araly1|318714|fgenesh1_pm.C_scaffold_3001730 560 6e-159
Ahg930830 jgi|Araly1|930830|scaffold_303287.1 507 7e-143
> Ahg929608 jgi|Araly1|929608|scaffold_302065.1
Length=932
Score = 1386 bits (750), Expect = 0.0
Identities = 844/891 (95%), Gaps = 0/891 (0%)
Strand=Plus/Plus
Query 1 ATGTTTGCAGTTGAAAACATTTCTATGGAATTCGAACCGGCGATCAACGAATCGTCTTCG 60
||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| |||
Sbjct 21 ATGTTTGCAGTTGAAAATATTTCTATGGAAGTCGAACCGGCGATCAACGAGTCGTCATCG 80
Query 61 TCACTTTCGTCATCTCGTAGTAGCTGCGGTCACTGGTATGTTCGTTACGGAGTCTGCATC 120
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TCACTGTCGTCATCTGGTAGTAGCTGCGGTCACTGGTATGTTCGTTACGGAGTCTGCATC 140
Query 121 GCTTGTAAATCGACGGTAAACAAACGCCATGGCAGAGCATTCGATTATCTCGTTCAAGGT 180
|| |||||||| |||||||| |||||||| ||| ||||||||||||||||||| ||||||
Sbjct 141 GCCTGTAAATCAACGGTAAATAAACGCCAAGGCCGAGCATTCGATTATCTCGTCCAAGGT 200
Query 181 TTGCAGCTAAGCCACGAAGCAGCAGCGTTTACGAAGCGCTTTACTACGCAATTCTATTGT 240
||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct 201 TTGCAGCTAAGCCACGAAGCAGCAGCGTTCACGAAGCGCTTTACAACGGAATTCTATTGT 260
Query 241 CTCAACGAGAAGAAGCTAAACCTTGTACTCGACTTGGACCACACGCTTCTCCACTCTATT 300
||||| ||||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 261 CTCAATGAGAAGAAGCTTCACCTTGTCCTTGACTTGGACCACACGCTTCTCCACTCTATT 320
Query 301 AGGGTTTCACTTCTTTCCGAAACAGAGAAGTGTCTAATCGAAGAAGCGTGTTCAACTACA 360
||||||||| |||| || |||||||||| || ||||||||||||||||||||||||||||
Sbjct 321 AGGGTTTCAATTCTCTCAGAAACAGAGAGGTATCTAATCGAAGAAGCGTGTTCAACTACA 380
Query 361 AGGGAAGATCTGTGGAAGTTGGACAGCGATTACTTGACAAAGCTACGGCCTTTTGTTCAC 420
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 381 AGGGAAGATCTGTGGAAGTTGGACATCGATTACTTGACAAAGCTACGCCCTTTTGTTCAC 440
Query 421 GAGTTTTTGAAGGAAGCCAACGAGTTGTTCACAATGTATGTTTATACAATGGGTACTAGA 480
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 441 GAGTTTTTGAAGGAAGCCAACGAAATGTTCACAATGTATGTTTATACAATGGGTACTAGA 500
Query 481 GTATACGCCGAATCCTTGTTGAAGCTGATTGATCCCAAGAGAATCTACTTTGGTGATAGA 540
|||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||| ||
Sbjct 501 GTATACGCCGAATCATTGTTGAAGCTGATTGATCCCAAGAGAATTTATTTTGGGGATCGA 560
Query 541 GTGATAACAAGAGACGAGTCTCCTTACGTGAAGACGCTTGATTTGGTTTTGGCTGAGGAG 600
|||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||
Sbjct 561 GTGATAACAAGAGACGAGAGTCCTTATGTGAAGACACTTGATTTGGTTTTGGCTGATGAG 620
Query 601 CGTGGAGTGGTTATTGTGGATGATACGAGTGATGTTTGGACGCATCACAAGAGTAACCTA 660
||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 621 CGTGGAGTGGTCATTGTGGATGATACGCGTGATGTTTGGACCCATCACAAGAGTAACCTA 680
Query 661 GTAGAGATTAACGAGTACCACTTTTTCAGAGTCAATGGCCCAGAAGAGTCAAATTCTTAC 720
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 681 GTAGAGATTAACGAGTACCACTATTTCAGAGTCAATGGCCCAGAAGAGTCAAAGTCTTAC 740
Query 721 ACGGAGGAGAAGAGAGACGAGAGTAAAAACAATGGTGGATTGGCCAATGTTCTGAAATTA 780
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 741 ACGGAGGAGAAGAGAGACGAGAGTAAAAACAGTGGTGGATTGGCCAATGTTCTGAAATTA 800
Query 781 CTCAAGGAAGTTCACTATGGATTCTTCAGAGTCAAGGAAGAGTTAGAGTCACAAGACGTG 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 CTTAAGGAAGTTCACTATGGATTCTTCAGAGTCAAGGAAGAGTTAGAGTCACAAGACGTG 860
Query 841 AGGTTTTTGCTACAAGAAATAGATTTCAAACTTCTCACAAAAGACGCCTGA 891
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 AGGTTTATGCTACAAGAAATAGATTTCAAACTTCTCACAAAAGACGCCTGA 911
> Ahg318714 jgi|Araly1|318714|fgenesh1_pm.C_scaffold_3001730
Length=1779
Score = 560 bits (303), Expect = 6e-159
Identities = 655/818 (80%), Gaps = 52/818 (6%)
Strand=Plus/Plus
Query 32 TCGAACCGGCGATCAACGAATCGTCTTCGTCACTT-TCGTCATCTCGTAGTAGCTGCGGT 90
||||||| ||||||||| || ||||| || || || || | || |||||| || |||
Sbjct 950 TCGAACCAAAGATCAACGAGTCCTCTTCATC-GTTATCCTC-T-TC-TAGTAGTTGTGGT 1005
Query 91 CACTGGTATGTTCGTT-ACGGAGTCTGCATCGCTTGTAAATCGACGGTAAACAAACGCCA 149
|||||||| ||| || ||||| |||||||||| || ||||| || || || ||| ||||
Sbjct 1006 CACTGGTACGTT-TTTCACGGAATCTGCATCGCCTGCAAATCAACAGTGAATAAAAGCCA 1064
Query 150 TGGCAGAGCATTCGATTATCTCGTTCAA-GGTTTGCAGCTAAGCCACGAAGCAGCAGCGT 208
||| |||||||||||||| | ||||| ||||||||||||||||||||||| | ||||
Sbjct 1065 AGGCCGAGCATTCGATTATAT-TTTCAACGGTTTGCAGCTAAGCCACGAAGCTGTGGCGT 1123
Query 209 TTACGAAGCGCTTTACTACGCAATTCTATTGTCTCAACGAGAAGAAGCTAAACCTTGTAC 268
| || ||| ||||||| ||| |||||| |||||||||||| |||||||| |||||||||
Sbjct 1124 TAACCAAGTGCTTTACAACGAAATTCTCTTGTCTCAACGACAAGAAGCTTCACCTTGTAC 1183
Query 269 TCGACTTGGACCACACGCTTCTCCACT-CTATTAGGGTTTCACTTCTTTCCGAAACAGAG 327
| ||||||||||||||||||||||| | || ||| |||| || ||| ||| || |||||
Sbjct 1184 TTGACTTGGACCACACGCTTCTCCA-TACTGTTATGGTTCCAAGTCTCTCCCAAGCAGAG 1242
Query 328 AAGTGTCTAATCGAAGAAGCGTGTTCAACTACAAGGGAAGATCTGTGGAAG-T------- 379
|||| ||| ||||||||||| ||||| | |||||||||||| | |||||| |
Sbjct 1243 AAGTATCTCCTCGAAGAAGCGGGTTCAGCAACAAGGGAAGATTTATGGAAGATCAAAGCC 1302
Query 380 -T--G-GA--C-A-GCG-ATTACTTGACAAAGCTACGGCCTTTTGTTCACGAGTTTTTGA 430
| | || | | | | ||| ||||||||||||| | |||||||||| || || ||||
Sbjct 1303 ATAGGAGATCCAATG-GAATT-CTTGACAAAGCTAAGACCTTTTGTTCGTGAATTCTTGA 1360
Query 431 AGGAAGCCAACGAGTTGTTCACAATGTATGTTTATAC-AATGGGTACTAGAGTATACGCC 489
| ||||||||| || ||||||| ||||||||||| || || ||||| | | | ||| | |
Sbjct 1361 AAGAAGCCAACCAGATGTTCACCATGTATGTTTACACTAA-GGGTAGTCGCGGATATG-C 1418
Query 490 GAATC-CTTGTTGAAGCTGATTGATCCCAAGAGAA-TCTACTTTG-GTGATAGAGTGATA 546
|| | | ||| ||||||||||||| |||| || | || |||| | ||||||||||||
Sbjct 1419 TAAACAAGTCTTGGAGCTGATTGATCCAAAGA-AACTTTATTTTGAG-GATAGAGTGATA 1476
Query 547 ACAAGAGACGAGTCTCCTTACGTGAAGACGCTTGATTTGGTTTTGGCTGAGGAGCGTGGA 606
|||| | ||||||| ||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 1477 ACAAAAAACGAGTCCCCTCATATGAAGACACTTGATTTGGTTTTGGCTGAGGAGCGTGGG 1536
Query 607 GTGGTTATTGTGGATGATACGAGTGAT-GTTTGGAC-GCATCACAAGAGTAACCTAGTAG 664
||||| |||||||| |||| | || | |||||| | | ||||||||||||||||||| |
Sbjct 1537 GTGGTGATTGTGGACGATATGCGT-ACCGTTTGGCCCG-ATCACAAGAGTAACCTAGTGG 1594
Query 665 AGATTAACGAGTACCACTT-TTTCAGAGTCAATGGCCCAGAAGAGTCAAATTC-TTACAC 722
| |||| | ||||| || | ||||||| |||| |||| | | ||||||| | | |||| |
Sbjct 1595 ATATTAGCAAGTAC-ACCTATTTCAGACTCAAAGGCC-A-A-GAGTCAA-TGCCTTACTC 1649
Query 723 GGAGGAGAAGAGAGACGAGAGTAAAAACAATGGTGGATTGGCCAATGTTCTGAAATTACT 782
||||||| || |||||||||| ||| | | |||||||||||||||||| ||||||||||
Sbjct 1650 TGAGGAGATGACAGACGAGAGTGAAAGCGACGGTGGATTGGCCAATGTTTTGAAATTACT 1709
Query 783 CAAGGAAGTTCACTA-TGGATTCTTCAGAGTC-AAGGA 818
|||||||||||| | | |||||||||||||| |||||
Sbjct 1710 TAAGGAAGTTCAC-AGTAGATTCTTCAGAGTCGAAGGA 1746
> Ahg930830 jgi|Araly1|930830|scaffold_303287.1
Length=904
Score = 507 bits (274), Expect = 7e-143
Identities = 650/824 (79%), Gaps = 55/824 (7%)
Strand=Plus/Plus
Query 73 TCTCGTAGTAGCTGCGGTCACTGGTA-TGTTCGTT-ACGGAGTCTGCATC-GCTTGTAAA 129
||| ||||| | || ||||||||||| ||| || | |||||||||||| || || |||
Sbjct 40 TCTAGTAGTTGTTGTGGTCACTGGTACGGTT--TTCATGGAGTCTGCATCGGC-TGCAAA 96
Query 130 TCGACGGTAAACAAACGCC-ATGGCAGAGCATTCGATTATCTCGTTCAA-GGTTTGCAGC 187
|| | || ||||| ||| ||||| ||||||| |||||| | ||||| ||||| ||||
Sbjct 97 TCAATAGTGCACAAAAGCCAATGGC-GAGCATTTGATTATAT-TTTCAACGGTTTACAGC 154
Query 188 TAAGCCACGAAGCAGCAGCGTTTACGAAG-CGCTTTACTACGCAAT-TCTATTGTCTCAA 245
||||||||||||| | || || || ||| | | || || ||| || |||||||||
Sbjct 155 TAAGCCACGAAGCTGTGGCATTAACCAAGTC-CCGCACAAC-AAATAACTCTTGTCTCAA 212
Query 246 CGAGAAGAAGCTAAACCTTGTACTCGACTTGGACCACACGCTTCTCCACTCT-ATTAGGG 304
||||||||| || ||||||| || |||||||||||||||||||||||| | | | ||
Sbjct 213 CGAGAAGAAACTTCACCTTGTCCTTGACTTGGACCACACGCTTCTCCAC-ATGAAAAAGG 271
Query 305 TTTCACT-TCT-TTCCGAAACAGAGAAGTGTCTAATCGAAGAAGCGTGTTCAACT-ACAA 361
|| || | ||| | ||| | |||||| || ||||||| ||||||| ||||| | | ||||
Sbjct 272 TTCCA-TGTCTCTCCCG-AGCAGAGATGTATCTAATCCAAGAAGCATGTTC-AGTAACAA 328
Query 362 GGGAAGATCTGTGG-----AAG--T--T--G-GA---CAGCGATTACTTGACAAAGCTAC 406
|||||||| | ||| ||| | | | || || ||| ||||| ||||||||
Sbjct 329 GGGAAGATATATGGAAAATAAGACTCCTAGGAGATCCCATAGATCGCTTGATAAAGCTAC 388
Query 407 GGCCTTTTGTTCACGAGTTTTTGAAGGAAGCCAACGAGTTGTTCACAATGTATGTTTATA 466
| || ||||||| ||| || ||||| |||||||| ||| ||||||||||||||||||| |
Sbjct 389 GACCCTTTGTTCGCGACTTCTTGAAAGAAGCCAATGAGATGTTCACAATGTATGTTTACA 448
Query 467 CAATGGGTACTAG-AGTATACGCCGAATCCT-TGTTGAAGCTGATTGATCCCAAGAGAAT 524
||| ||||||| | | ||||| | || || | ||| ||||||||||||| || ||| |
Sbjct 449 CAAAGGGTACTCGCA-AATACG-CTAAAGCTGTCTTGGAGCTGATTGATCCTAATAGACT 506
Query 525 CTACTTTGGTGATAGAGTGATAACAAGAGACGAGTCTCCTTA-CGTGAAGACGCTTGATT 583
||| ||||||||||||||||| |||| ||||||| |||| | | ||||||||||||||
Sbjct 507 CTATTTTGGTGATAGAGTGATTACAAAAGACGAGAGTCCTCATC-AGAAGACGCTTGATT 565
Query 584 TGGTTTTGGCTGAGGAGCGTGGAGTGGTTATTGTGGATGATACGAGTGATGTTTGGACGC 643
|||||||||||||||||||||| ||||| ||||| ||||||| | ||||| ||||| | |
Sbjct 566 TGGTTTTGGCTGAGGAGCGTGGGGTGGTGATTGTTGATGATAGGCGTGATATTTGGCCCC 625
Query 644 ATCACAAGAGTAACCTAGTAGAGATTAACGAGTACCACTTTTTCAGAGTCAATGGCCCAG 703
||||||||||||||||| ||||||||| | ||||| | | ||||||||||| ||||| ||
Sbjct 626 ATCACAAGAGTAACCTAATAGAGATTAGCAAGTACAAGTATTTCAGAGTCAGTGGCCAAG 685
Query 704 AAGAGTCAAATTCTTACACGGAGGAGAAGAGAGACGAGAGT-AAAAACAATGGTGGATTG 762
| ||||||||||||| | ||| |||||| |||||||||| ||||| | |||||||||
Sbjct 686 --G-GTCAAATTCTTACTCTGAGAAGAAGACAGACGAGAGTGAAAAAGAC-GGTGGATTG 741
Query 763 GCCAATGTTCTGAAATTACTCAAGGAAGTTCACTATGGATTCTTCA-GAGTCAAGGA--A 819
|| |||||| | ||||||||||| ||||||||| | ||||||||| | ||| |||| |
Sbjct 742 GCGAATGTTTTAAAATTACTCAAACAAGTTCACTGTAGATTCTTCATG-GTCGAGGAGGA 800
Query 820 GA-GTTAGAGTCACAAG-ACGTGAGGTTTTTGCTACAAGAAATA 861
|| | | |||||| | | |||| |||| ||||| ||||||||
Sbjct 801 GAAGCTGGAGTCA-ATGGACGTCAGGTCGCTGCTAAAAGAAATA 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5