BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17560.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479232 jgi|Araly1|479232|fgenesh2_kg.3__1933__AT3G17560.1 1387 0.0
Ahg949548 jgi|Araly1|949548|scaffold_801435.1 259 3e-68
Ahg331355 jgi|Araly1|331355|fgenesh1_pm.C_scaffold_8000698 246 2e-64
Ahg921787 jgi|Araly1|921787|scaffold_103068.1 86.1 6e-16
> Ahg479232 jgi|Araly1|479232|fgenesh2_kg.3__1933__AT3G17560.1
Length=1116
Score = 1387 bits (751), Expect = 0.0
Identities = 877/937 (94%), Gaps = 12/937 (1%)
Strand=Plus/Plus
Query 306 TAG-TTCAGAAGCTATTATATCTCAAGCCTTTCACTGTGATGGTTTATTGCTATGCACCA 364
||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 188 TAGCTTCAGAAGCCATTATATCTCAAGCATTTCACTGTGATGGTTTATTGCTATGCACCA 247
Query 365 CCAAGGAAAACCGATTAGTGGTTTTGAACCCGTTTTCAGGGCAAACCAAATGGTTGCAAC 424
|||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||
Sbjct 248 CCAAGGAAAACCGATTAGTGGTTTGGAACCCGTTTTCGGGGCAAACCAGATGGTTGCAAC 307
Query 425 CACAAAATCGTTGTAAGATAGATGAGGCCTATGTTCTTGGATACGACAACAGTGACTTGT 484
||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 308 TGCAAAATCGTGGTAGGATAGATGAGGCCTATGTTCTCGGATACGACAACAGGGACGTGT 367
Query 485 GCCATAGCTACAAAATCTTGAGTTTTCCGGATCTATACGAACAAGAATTGGAAACTATCA 544
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 368 GCCATAGCTACAAAATCTTGAGTTTTCCGGATTTATACGAACAAGAATTGGAAACTATCA 427
Query 545 AGAATGCAGGGAGGGATCTTGATGTCACTCCCGAAGGCGACTTAGAATTGAAAACCGATG 604
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 428 AGAATGCATGGAAGGATCTTGATGTCACTCCCGAAGGCGACTTAGAATTGAAAATCAATG 487
Query 605 ATTTTAGCTCTAATTCATGGAGGAGAAATCTTGGTGTCACTCCCC-ACGGCGGCTTAGGA 663
||| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
Sbjct 488 ATTCTAGCTCTAATTCATGGAGGAGAAATCTTGGTGTCACTCCCCTA-GGCGACTTAGAA 546
Query 664 TTGAAAATATATGATTTTAGCTCTAATTCATGGAAGAAACTTGATGTCATCACTCCCGAA 723
|||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 547 TTGAAACTATATGATTTTAGCTCTAATTCATGGAAGCATCTTGATGTCATCACTCCCGAA 606
Query 724 GGTTGCTTAAAATCTTATGGTGTGTCACTGAAGGGAAATGCTTATTGGGTGTACATGTCT 783
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 607 GGTTGCTTAAAATCTTATGGCGTGTCATTGAAGGGAAATGCTTATTGGGTGTACGTGTCT 666
Query 784 AAACGAAGAGGAGTCAACGACTACTCTCTACTTAGTTTTGATTTTTCAACAGAGAGTTTT 843
|| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 667 AATCGAAGAGGAGTTAACGACTACTCTATACTTAGTTTTGATTTTTCAACAGAGAGATTT 726
Query 844 CAACATTTGTGTGTTCCCTTTCATCAGGAAGCAGATTGTTTTGGTACTATGGCTCTCTCA 903
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 727 CAACATTTGTGTGTTCCCTTTCATCAGGAAGCAGATTGTTTTGATACCATGGCTCTCTCG 786
Query 904 GTTGTTAGAGAAGAACATCTTTCGTTGTTATATCAGAGTTGCGAGACTCTAAAGGTGGAA 963
||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 787 GTTTTTAGAGAAGAACATCTTTCGTTGTTATATCAGAGTAGCGAGACACTAAAGGTGGAA 846
Query 964 ATATGGATGACCAAAGAGATTGATACAACATTTGTGTCATGGAAAAAGTTCTTAACAGTG 1023
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 847 ATATGGATGACCAAAGAGATTGATACAACATTTGTGTCATGGAGAAAGTTCTTAATAGTG 906
Query 1024 GATTTAGAACCTCATCTACCTCATCTCCTTATGTTTTCGTGTCGCATGAGTTTCTTCATC 1083
||||||||||||||||| || | | |||||||||||||| |||||||||||||||
Sbjct 907 GATTTAGAACCTCATCT-CC-C-T------ATGTTTTCGTGTCGAATGAGTTTCTTCATC 957
Query 1084 GACGAGGAGAAGAAAGTTGCCGTGTGTTGTGACAGAGATAACAAGGTACACGTTGTTGGA 1143
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 958 TACGAGGAGAAGAAAGTTGCCGTGTGTTGTGACAGAGATAACAAGGTATACATTATTGGA 1017
Query 1144 GAAGATGAATACAGAGTATCTTCTGGTTTTTATTTTCTAGATTTTGAAGGCATAACATGT 1203
||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1018 GAAGATGAATACAAAGTATCTTCCGGTTTTTATTTTGTAGATTTTGAAGGCATAACATGT 1077
Query 1204 TGCCTGACTGTCTTTGGTTATGTTCCAAGATTGGTTT 1240
||||| ||||||||||||||||| |||||||||||||
Sbjct 1078 TGCCTAACTGTCTTTGGTTATGTACCAAGATTGGTTT 1114
Score = 270 bits (146), Expect = 1e-71
Identities = 172/185 (93%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 1 ATGAGGTCAGAAATCACAAGAGAAACAAAGTTGCTCTTCGATCTTCCACAGGATGTGATA 60
||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1 ATGAGGTCAGAAATCGTAAGAGAAACAAAGTTAATCTTCGATCTTCCACAAGATGTGATA 60
Query 61 GAAGAGATATTCTCTAAGGTTCCGGTGACATGTCTAAGAAGAATACGATCTACTTGCAAA 120
|| ||||| || ||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 61 GAGGAGATTTTTTCTAAGGTTCCGGTGACATCTCTAAGAAGATTACGATCTACTTGCAAA 120
Query 121 AGATTGTACGCTTTACTCAAAGATCGTGGATTCATCAGAAAACATTTTGCTAAATCAGCA 180
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 121 AGATTGTACGCTTTACTCAAAGATCAAGGATTCATCAAAAAACATTTTGCTAAATCAGCA 180
Query 181 AGGCA 185
|||||
Sbjct 181 AGGCA 185
> Ahg949548 jgi|Araly1|949548|scaffold_801435.1
Length=1192
Score = 259 bits (140), Expect = 3e-68
Identities = 297/367 (81%), Gaps = 33/367 (9%)
Strand=Plus/Plus
Query 888 TACTATGGCTCTCTCAGTTGTTAGAGAAGAACATCTTTCGTTGTTATATCAGAGTTGCGA 947
|||||||||||| || ||||||||||||||||||||||||||||||| |||||| | |
Sbjct 809 TACTATGGCTCTATCGGTTGTTAGAGAAGAACATCTTTCGTTGTTATTTCAGAGCGGAGT 868
Query 948 GACTCTAAAGGTGGAAATATGGATGACCAAAGAGATTGATACAACATTTGTGTCATGGAA 1007
||| | |||| ||||||||||||| |||| |||||||| || |||| ||||||||||||
Sbjct 869 GACACAAAAGATGGAAATATGGATAACCACTGAGATTGAGACCACATCTGTGTCATGGAA 928
Query 1008 AAAGTTCTTAACAGTGGATTTAGAACCTCATCTACCTCATCTCCTTATGTTTTCGTGTCG 1067
|||||||||||||||||||| |||||||||| || ||| ||||||||| || |
Sbjct 929 CAAGTTCTTAACAGTGGATTTTGAACCTCATC--CC-CAT------ATGTTTTCGCGTGG 979
Query 1068 CATGAGTTTCTTCATCGACGAGGAGAAGAAAGTTGCCGTGTGTTGTGA------C-A-GA 1119
||||||||| ||||| ||||||||||||||||||||||| |||||||| | | ||
Sbjct 980 CATGAGTTTTTTCATTGACGAGGAGAAGAAAGTTGCCGTTTGTTGTGAGAAAGTCCAAGA 1039
Query 1120 GA-TAA------CAA---GGTACACGTTGTTGGAGAAGATGAATACAGAGTATCTTCTGG 1169
|| ||| ||| |||| || ||||||||||||||||||||| ||||||| | ||
Sbjct 1040 GAATAATATATTCAACAAGGTATACATTGTTGGAGAAGATGAATACAAAGTATCTCCGGG 1099
Query 1170 TTTTTATTTTC-TAGATTTT-GAAGGCATA-ACATGTTGCCTGACTGTCTTTGGTTATGT 1226
|||| ||||| | || | | || |||||| | | |||||| ||| | |||||||||||
Sbjct 1100 TTTTGGTTTTCAT-GAGTATAGA-GGCATATATA-GTTGCCCAACTATGTTTGGTTATGT 1156
Query 1227 TCCAAGA 1233
|||||||
Sbjct 1157 TCCAAGA 1163
> Ahg331355 jgi|Araly1|331355|fgenesh1_pm.C_scaffold_8000698
Length=1167
Score = 246 bits (133), Expect = 2e-64
Identities = 291/361 (81%), Gaps = 35/361 (10%)
Strand=Plus/Plus
Query 892 ATGGCTCTCTCAGTTGTTAGAGAAGAACATCTTTCGTTGTTATATCAGAGT-TGCGAGAC 950
|||||||| || ||||||||||||||||||||||||||||||| ||||||| | | |||
Sbjct 808 ATGGCTCTATCGGTTGTTAGAGAAGAACATCTTTCGTTGTTATTTCAGAGTGTT-GTGAC 866
Query 951 TCTAAAGGTGGAAATATGGATGACCAAAGAGATTGATACAACATTTGTGTCATGGAAAAA 1010
| |||| ||||||||||||| ||||| |||||||| || |||| |||||||||||| ||
Sbjct 867 ACAAAAGATGGAAATATGGATAACCAATGAGATTGAGACCACATCTGTGTCATGGAACAA 926
Query 1011 GTTCTTAACAGTGGATTT-AGAACCTCATCTACCTCATCTCCTTATGTTTTCGTGTCGCA 1069
|||||||||||||||||| | ||||||||| | |||| ||||||||| || |||
Sbjct 927 GTTCTTAACAGTGGATTTTA-AACCTCATC--C-TCAT------ATGTTTTCGCGTAGCA 976
Query 1070 TGAGTTTCTTCATCGACGAGGAGAAGAAAGTTGCCGTGTGTTGTGA------C-A-GAGA 1121
||||||| ||||| || ||||||||||||||||||||||||||||| | | ||||
Sbjct 977 TGAGTTTTTTCATTGATGAGGAGAAGAAAGTTGCCGTGTGTTGTGAGAAAGACCAAGAGA 1036
Query 1122 ------TA---A-CAAGGTACACGTTGTTGGAGAAGATGAATACAGAGTATCTTCTGGTT 1171
|| | ||||||| || |||||||||||||||||| || ||||||| | ||||
Sbjct 1037 AGAAGATATTCAACAAGGTATACATTGTTGGAGAAGATGAATTCAAAGTATCTCCCGGTT 1096
Query 1172 TTTATTTTCTAGATTTT-GAAGGCATA-ACATGTTGCCTGACTGTCTTTGGTTATGTTCC 1229
|| |||| | |||| | || |||||| | | |||||| ||| | ||||||||||||||
Sbjct 1097 TTGGTTTTATTGATTGTAGA-GGCATATATA-GTTGCCCAACTATGTTTGGTTATGTTCC 1154
Query 1230 A 1230
|
Sbjct 1155 A 1155
> Ahg921787 jgi|Araly1|921787|scaffold_103068.1
Length=586
Score = 86.1 bits (46), Expect = 6e-16
Identities = 73/86 (85%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 333 CTTTCACTGTGATGGTTTATTGCTATGCACCACCAAGGAAAACCGATTAGTGGTTTTGAA 392
||||||||| ||||||||||||||||||||||||||||| || || | ||||||| |||
Sbjct 215 CTTTCACTGCGATGGTTTATTGCTATGCACCACCAAGGACAATAGACTCGTGGTTTGGAA 274
Query 393 CCCGTTTTCAGG-GCAAACCAAATGG 417
|| | |||||| | ||||||| |||
Sbjct 275 TCCATGTTCAGGAG-AAACCAAGTGG 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5