BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17570.1
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479233 jgi|Araly1|479233|fgenesh2_kg.3__1934__AT3G17570.1 1537 0.0
Ahg479202 jgi|Araly1|479202|fgenesh2_kg.3__1903__AT3G17270.1 165 7e-40
> Ahg479233 jgi|Araly1|479233|fgenesh2_kg.3__1934__AT3G17570.1
Length=1162
Score = 1537 bits (832), Expect = 0.0
Identities = 1059/1166 (91%), Gaps = 25/1166 (2%)
Strand=Plus/Plus
Query 8 TGTTTACCGATCTTCCACGAGATTTAGAAACAGAAATACTCTCAAGAGTTCCCGCCACAT 67
||||||| |||||||||||||||||||| | |||||||||||||||||||| |||| ||
Sbjct 5 TGTTTACAAATCTTCCACGAGATTTAGAATCGGAAATACTCTCAAGAGTTCCTGCCAGAT 64
Query 68 CTCTACAAAAATTGAAGCCTACTTGCAAACGGTGGTACACTTTATTCAAAGATCCGGAAT 127
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CTCTACAAAAACTGAAACCTACTTGCAAACGGTGGTACACTTTATTCAAAGATCCGGAAT 124
Query 128 TCCTCAAGAAGCATGTGGGTAGAGCGGAAAGGGAGGTGATTTCGCTGATGAGTCTCAGGG 187
||||||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct 125 TCCTCAAGAAGCACGTGGGTAGAGCGGAAAGGGAGGTGCTCTCACTGATGGGTTTCAGGG 184
Query 188 TTTATTCACTTAGTGTTAATCTCTCTGGAATCCACAGCAGC---G---------TTGAAA 235
|||||||| ||||||| |||||||||||||||||||||||| | ||||||
Sbjct 185 TTTATTCAGTTAGTGTCAATCTCTCTGGAATCCACAGCAGCGTTGATCCACCCATTGAAA 244
Query 236 TGACAGGTATGTTAAACAGTCTCAAGGATTCTG-AAGATGTCAAAATATCT-GACATCAC 293
||||||| ||||| |||||||| |||||||||| || |||||||||||| | || |||
Sbjct 245 TGACAGGCATGTTTAACAGTCTGAAGGATTCTGCAA-ATGTCAAAATAT-TGGAAATCTG 302
Query 294 TGAGTGCAACGGTTTATTATTGTGCACCACCGATGACAGTAGACTTGTGGTTTGGAACCC 353
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct 303 TGAGTGCAACGGTTTATTATTGTGCACCACCAATGACAGTAGACTCGTGGTTTGGAATCC 362
Query 354 TTATACTGGTGAAACCAGGTGGATCCCTTACAAATCCAACTCACCTTATGAAATGTACCA 413
||||||||||||||||||||||||||| |||||||||| | ||| || || |||||||||
Sbjct 363 TTATACTGGTGAAACCAGGTGGATCCCATACAAATCCAGCACACGTTTTGCAATGTACCA 422
Query 414 GAAGTTTGTTTTGGGATACGACAACACCAATAAATCTCGCTATAGCTACAAAATCTTGAG 473
||||||||||| ||||||||||||| | |||||| ||||| ||||||||||||||||
Sbjct 423 TAAGTTTGTTTTAGGATACGACAACAGC---AAATCTTGCTATGGCTACAAAATCTTGAG 479
Query 474 GTGTTACCACGGCTTGATCGACTTTGGTTATGAGTTTGAAATCTATGAGTTTAACTCTCA 533
|||||||||| || || |||||||||| ||||| |||||||||||| ||||||||| |
Sbjct 480 GTGTTACCACTTCTACATTGACTTTGGTTTTGAGTATGAAATCTATGATTTTAACTCTGA 539
Query 534 TTCATGGAGGAGATTTTATGACAACTCTCCTAATTGTTCCTTTGA-ATCTAAGGGCGTGA 592
|||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 540 TTCATGGAGGCGTTTTTATGACAACTCTCCTAATTGTTCCTTT-ATATCTAAGGGCGTGA 598
Query 593 CACTGAAGGGCAACACTTACTGGTTTGCTTCAGATACTGAAGGCCGCCACA-TCATACTC 651
|| ||||||| || |||||||||||| |||||||||||||||||||||| | ||||||||
Sbjct 599 CATTGAAGGGAAATACTTACTGGTTTACTTCAGATACTGAAGGCCGCCA-ATTCATACTC 657
Query 652 AGGTTTGATTTCGCAACAGAGAGATTTGGACGTCTCTCTCTTCTTTATCAGAGTGGTGGT 711
| |||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 658 ATGTTTAATTTCACAACAGAGAAATTTGGACGTCTCTCTCTTCCTTATCAGAGTGGTGGT 717
Query 712 TATGTTGATAATGTTGTGGAAACTGGGGTTTTATCGGCTGTTAGAGAAGAGAAACTTGCG 771
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 TATGTTGATGATGTTGTGGAGACTGGGGTTTTATCGGCTGTTAGAGAAGAGAAACTTGCG 777
Query 772 TTGTTATATGAGAGGTTTGATGAGCTGAATGATTCATCAGAGATGAAGATATGGGTGACG 831
|||||||||||||||||||||||||| | |||| |||||| ||||||||||||||||||
Sbjct 778 TTGTTATATGAGAGGTTTGATGAGCTTACTGATACATCAGTGATGAAGATATGGGTGACC 837
Query 832 AATACTAAAATCG-TCGAGGCCAAAGACTTGTCGTGGAGCGACTTCTTGGTAGTGGATTC 890
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AATACTAAAATCGAT-GAGGCCAAAGACTTGTCGTGGAGCGACTTCTTGGTAGTGGATTC 896
Query 891 CTCTAAATTTATGGTAACAAGGATGACGAATGTGATGAGTTTCCTGGTGGACGAGGAGaa 950
|| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 897 CTGTAAATTTATGGTACCAAGGATGACGAATGTGATGAGTTTCTTGGTGGACGAGGAGAA 956
Query 951 aaaaaTGGTGGTGGTTTGTGATACAGACATTGATCAACATATGAACAGATTTTACATTGT 1010
||||||||| ||| ||||||||||| ||| ||||||| | |||| |||||||||||||||
Sbjct 957 AAAAATGGTTGTGTTTTGTGATACATACAGTGATCAAAACATGACCAGATTTTACATTGT 1016
Query 1011 CGGAGAGGATATATACAAAGAAGTTTATAAAGATATTGCACAGGGATGGTTTTCCTATTG 1070
|||||||||||||||||||||||||||||| |||||| || |||||| ||||||||||||
Sbjct 1017 CGGAGAGGATATATACAAAGAAGTTTATAATGATATTACAGAGGGATCGTTTTCCTATTG 1076
Query 1071 GCCACTTCTCATCAGTTATGCTCCAAGTCTGGTTCAAATTCAGCAAGGTAAAGTGATTCC 1130
||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1077 GCCACGTCTCGTCAGTTATGCACCAAGTCTGGTTCAAATTCAGCAAGGTAAAGTGAATCC 1136
Query 1131 CGGAGGCAAAAGAAAAAGGTGATTAG 1156
|||||||||||||||||||||||||
Sbjct 1137 TGGAGGCAAAAGAAAAAGGTGATTAG 1162
> Ahg479202 jgi|Araly1|479202|fgenesh2_kg.3__1903__AT3G17270.1
Length=1050
Score = 165 bits (89), Expect = 7e-40
Identities = 246/320 (77%), Gaps = 18/320 (6%)
Strand=Plus/Plus
Query 803 ATTCATCAGAGATGAAGATATGGGTGACGAATACTAAAATCG-TCGAGGCCAAAGACTTG 861
|||||||||||||||||||||||||||| |||| | | | | |||||||||||||||
Sbjct 584 ATTCATCAGAGATGAAGATATGGGTGACCAATA--AGTTT-GAT-GAGGCCAAAGACTTG 639
Query 862 TCGTGGAGCGACTTCTTGGTAGTGGATTCCTC-TAAATTTATGGTAACA-AGGATGACGA 919
|| |||||| | ||||| |||||||||| | |||||||| | || || | | ||| |
Sbjct 640 TCATGGAGCCAGTTCTTAGTAGTGGATTT-TGATAAATTTACGTTACCATATG-TGAATA 697
Query 920 ATGTGATGAGTTTCCTGGTGGACGAGGAGaaaaaaaTGGTGGTG-GTTTGTGATACAGAC 978
||||| |||||| | |||||||||||| ||| ||| ||| ||| || ||||||||
Sbjct 698 GCGTGATAAGTTTCTTCTTGGACGAGGAGAGTAAAGTGGCAGTGTGTT-GTTATACAGAC 756
Query 979 ATTGA---TCAACATATGAACAGATTTTACATTGTCGGAGAGGATATATACAAAGAAGTT 1035
|| || | || | | || || | | |||||||| |||| |||| | || ||||||||
Sbjct 757 ATGGAAGATGAAGAAAGGACCAAAATCTACATTGTTGGAGTGGATCTTTATAAAGAAGTC 816
Query 1036 TATAAAGATATTGCACAGGGATGGTTT-TCCTATTGGCCAC-TTCTCATCAGTTATGCTC 1093
|||||||| || || |||||| || || |||||||| || || ||||||||||||
Sbjct 817 TATAAAGAGGTTACAAAGGGATCAATTCTCA-ATTGGCCATGTT-TCGTCAGTTATGCTC 874
Query 1094 CAAGTCTGGTTCAAATTCAG 1113
||| | ||||||| ||||||
Sbjct 875 CAAATTTGGTTCACATTCAG 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43117019127
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5