BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17580.1

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929612 jgi|Araly1|929612|scaffold_302069.1                        451    3e-126
  Ahg473969 jgi|Araly1|473969|fgenesh2_kg.1__3923__AT1G48330.1         174    6e-43 


> Ahg929612 jgi|Araly1|929612|scaffold_302069.1
Length=286

 Score =  451 bits (244),  Expect = 3e-126
 Identities = 260/268 (97%), Gaps = 0/268 (0%)
 Strand=Plus/Plus

Query  87   aaaaaaaTGGCATCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCAACATTC  146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18   AAAAAAATGGCATCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCAACATTC  77

Query  147  TTCAACCAACCTCAACAATCACCAAAGAAGGGTTGCCGTGGAAGAATGGATGCGCAAGCC  206
            ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| 
Sbjct  78   TTCAACCAACCGCAACAATCACCAAAGAAGGGTTGTCGTGGAAGAATGGATGCGAAAGCA  137

Query  207  AGGGAAGAGCACGAGAAGAGAATGGTTCAAGAGCTTCAAGGAGAAGTCATGGCTTGTGGT  266
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  138  AGGGAAGAGCACGAGAAGAGAATGGTTCAAGAGCTCCAAGGAGAAGTCATGGCTTGTGGT  197

Query  267  TACGACGACGTCCTCGTCATGTGGTCTATTCTTGACAAATCTAACTCCTCAAATAACCTC  326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  198  TACGACGACGTCCTCGTCATGTGGTCTATTCTTGACAAATCTAACTCCTCAAATAACCTC  257

Query  327  TCTTCTTAACCCCAAAACCAAACACAAA  354
            |||| |||| | ||||||||||||||||
Sbjct  258  TCTTGTTAATCTCAAAACCAAACACAAA  285


> Ahg473969 jgi|Araly1|473969|fgenesh2_kg.1__3923__AT1G48330.1
Length=511

 Score =  174 bits (94),  Expect = 6e-43
 Identities = 206/258 (80%), Gaps = 16/258 (6%)
 Strand=Plus/Plus

Query  79   TAAACACTaaaaaaaTGGCATCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGG  138
            ||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  36   TAAACA-AAAAAAAATGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGG  94

Query  139  CAACATTCTTCAACCAACCT-CAACAATCACCAAAGAAGGGTTGCCGTGGAAGAATGGAT  197
            | || ||||| ||| ||||  || ||||||||  | ||  |   ||  | || |  | | 
Sbjct  95   CCACGTTCTTTAAC-AACCCGCAGCAATCACCGCACAACCG---CCACGCAA-AC-GCAA  148

Query  198  -GCGCAAGCCAGGGAAGAGCACGAGAAGA-GAATGGTTCAAGAGCTTCAAGGAGAAGTCA  255
             | || ||  ||  |||| || |||| || |||  || || ||||||||||| || ||||
Sbjct  149  AG-GCGAG--AG--AAGAACATGAGA-GACGAACCGTGCAGGAGCTTCAAGGTGATGTCA  202

Query  256  TGGCTTGTGGTTACGACGACGTCCTCGTCATGTGGTCTATTCTTGACAAATCTAACTCCT  315
            ||||||||||||| || || ||||||||||||||||| ||||||||||| || ||||| |
Sbjct  203  TGGCTTGTGGTTATGAAGATGTCCTCGTCATGTGGTCAATTCTTGACAAGTCAAACTCTT  262

Query  316  CAAATAACCTCTCTTCTT  333
            |||| || ||||||||||
Sbjct  263  CAAACAATCTCTCTTCTT  280



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24474912714


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5