BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17590.2
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479235 jgi|Araly1|479235|fgenesh2_kg.3__1936__AT3G17590.1 1380 0.0
Ahg904610 jgi|Araly1|904610|Al_scaffold_0003_1738 187 1e-46
> Ahg479235 jgi|Araly1|479235|fgenesh2_kg.3__1936__AT3G17590.1
Length=885
Score = 1380 bits (747), Expect = 0.0
Identities = 847/893 (95%), Gaps = 16/893 (2%)
Strand=Plus/Plus
Query 19 CACACTCTCTCGCTGACTCTCTTCGAAA-CTCAATTTGTGAAATTTGGGGGTTTAAGGAT 77
||| |||||||||||||||| ||| ||| | ||| |||||||| || |||||||||||||
Sbjct 1 CACTCTCTCTCGCTGACTCTGTTC-AAAGC-CAAATTGTGAAA-TT-GGGGTTTAAGGAT 56
Query 78 GAAGGGTTTAGTGTCTACTGGTTGGAAAGGTCCCGTCAAGTTCAGGATCTATAGGCCCAC 137
|||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 57 GAAGGGTTTAGTGTCTACTGGTTGGAAAGGTCCCGTCAAGTTTAGG----AT--GCCCAC 110
Query 138 TGCTGAAAACTTGGTACCTATTCGATTGGACATTCAATTCGAAGGTCAGCGTTACAAAGA 197
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 111 TGCTGAAAACTTGGTACCAATTCGTTTGGACATTCAATTCGAGGGTCAGCGTTACAAAGA 170
Query 198 TGCTTTCACTTGGAACCCTTCAGACCCGGATAATGAAGTCGTTATCTTTGCCAAAAGAAC 257
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 171 TGCTTTCACTTGGAACCCTTCAGACCCGGATAATGAAGTCGTTGTCTTTGCCAAAAGAAC 230
Query 258 TGTTAAAGACTTGAAACTTCCCTATGCATTTGTCACTCAGATTGCCCAATCTATTCAGTC 317
|||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct 231 TGTTAAAGACTTGAAACTGCCCTCTGCATTTATCACTCAGATTGCCCAATCTATTCAGTC 290
Query 318 TCAGCTCTCAGACTTTCGGGCTTATGAAGGACAAGACATGTACACTGGTGAAAAAATCAT 377
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 291 TCAGCTCTCAGACTTTCGGGCATATGAAGGACAAGATATGTACACTGGTGAAAAAATCAT 350
Query 378 ACCAATTAAGCTTGATCTCCGAGTTAACCATACTCTCATCAAGGATCAGTTCTTATGGGA 437
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 351 ACCAATTAAGCTTGATCTCCGAGTTAACCATACCCTCATCAAGGATCAGTTCTTGTGGGA 410
Query 438 CCTAAACAATTTTGAGAGTGATCCTGAGGAATTTGCAAGAACCTTGTGCAAGGATTTAGG 497
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 411 CCTAAACAATTTTGAGAGTGATCCTGAGGAATTCGCAAGAACCTTGTGCAAGGATTTAGG 470
Query 498 TGTTGAAGACCCTGAAGTTGGACCTGCTGTTGCCTTTGCAATAAGGGAACAACTTTACGA 557
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGTTGAAGATCCTGAAGTTGGACCTGCTGTTGCCTTTGCAATAAGGGAACAACTTTACGA 530
Query 558 GATTGCAATTCAAAGTGTGGCTTCAGCTAGGGAGAGTAGATTAAGCAAGAAAGGCCGCAG 617
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 531 GATTGCAATTCAAAGTGTGGCTTCAGCTAGGGAGAGTAGATTAAGTAAGAAAGGCCGCAG 590
Query 618 AGGATCTGATCATGGTTCAGCGAGCAAGGCAAGTGGCCTGTCAATGGACTTAATGAAGTT 677
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 591 AGGATCTGATCATGGTTCAGCGAGCAAGGCAAGTGGCTTGTCAATGGACTTAATGAAGTT 650
Query 678 ATTCAGTTTTAAGTCCAGTGTAGTTCGGAAAAGGAAAGACTTGGATGTTTATGAACCAGT 737
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 ATTCAGCTTTAAGTCCAGTGTAGTTCGGAAAAGGAAAGACTTGGATGTTTATGAACCAGT 710
Query 738 TGTGGATCTGCTAACAAGTGAGGAAGTTGATGCGCTTGAAGCCAGGGAAGAGAGACATGC 797
|||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||
Sbjct 711 TGTGGATCTGCTAACAAGTGAGGAAGTTGATGCGCTTGAAGCGAGGGCAGAGAGGCATGC 770
Query 798 AAGGTGAAGAGTTTCGTTTACATGTATAAATATTTCTTAGGGCA--ACACTCAAAATATG 855
||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 771 AAGGTAAAGAGTTTCGTTTACATGTATATTTATTTCTTAGGGCAGGACACTCAAAATATG 830
Query 856 TTGTATCATGCTT---AACTTGAGTTAATGATATTAAGACAATCTTTTATGAG 905
||||||||||||| |||| |||| |||||||||||||||||||| |||||
Sbjct 831 TTGTATCATGCTTCTTAACTAAAGTTTATGATATTAAGACAATCTTTAATGAG 883
> Ahg904610 jgi|Araly1|904610|Al_scaffold_0003_1738
Length=1020
Score = 187 bits (101), Expect = 1e-46
Identities = 115/122 (94%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 520 CCTGCTGTTGCCTTTGCAATAAGGGAACAACTTTACGAGATTGCAATTCAAAGTGTGGCT 579
||||||| ||||||||| |||||||||||||||||| |||||||||||| || |||||||
Sbjct 136 CCTGCTGCTGCCTTTGCGATAAGGGAACAACTTTACCAGATTGCAATTCCAATTGTGGCT 195
Query 580 TCAGCTAGGGAGAGTAGATTAAGCAAGAAAGGCCGCAGAGGATCTGATCATGGTTCAGCG 639
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 196 TCAGCTAGGGAGAGTAGATTAAGTAAAAAAGGCCGCAGAGGATCTGATCATGGTTCAGCG 255
Query 640 AG 641
||
Sbjct 256 AG 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5