BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17600.1

Length=835
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg904722 jgi|Araly1|904722|Al_scaffold_0003_1850                    804    0.0  


> Ahg904722 jgi|Araly1|904722|Al_scaffold_0003_1850
Length=477

 Score =  804 bits (435),  Expect = 0.0
 Identities = 463/477 (97%), Gaps = 0/477 (0%)
 Strand=Plus/Plus

Query  103  ATGGAGGTCTCTAACTCTTGTTCTTCATTTTCTTCATCCTCTGTCGACAGTACTAAACCT  162
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGGAGGTTTCTAACTCTTGTTCTTCATTTTCTTCATCCTCTGTCGACAGTACTAAGCCT  60

Query  163  TCTCCTTCTGAATCTTCTGTTAATCTCTCCCTTAGTCTCACATTTCCTTCTACTTCTCCA  222
            ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  61   TCTCCTTCTGAATCTTCTGTTAATCTCTCCCTTAGCCTCACTTTTCCTTCTACTTCTCCA  120

Query  223  CAAAGAGAAGCAAGACAAGATTGGCCACCGATAAAGTCTAGATTAAGAGATACACTAAAG  282
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  121  CAAAGAGAAGCAAGACAAGATTGGCCACCGATAAAGTCTCGATTAAGAGATACACTAAAG  180

Query  283  GGTCGTCGTCTTCTTCGTCGTGGTGATGACACTTCTCTCTTTGTTAAGGTTTATATGGAA  342
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGTCGTCGCCTTCTTCGTCGTGGTGATGACACTTCTCTCTTTGTTAAGGTTTATATGGAA  240

Query  343  GGTGTTCCCATTGGAAGAAAACTCGACCTTTGCGTATTCTCAGGCTACGAGAGTCTATTA  402
            ||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct  241  GGTGTCCCCATTGGAAGAAAACTCGACCTTTGCGCATTCTCAGGCTACGAGAGCCTATTA  300

Query  403  GAAAATCTCTCTCACATGTTCGATACTTCAATCATCTGCGGTAATCGAGATCGAAAACAT  462
            |||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct  301  GAAAATCTTTCTCACATGTTTGATACTTCAATCATCTGCGGTAACCGAGATAGAAAACAT  360

Query  463  CATGTTTTGACATATGAAGACAAGGATGGAGATTGGATGATGGTCGGAGATATTCCATGG  522
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  361  CATGTTTTGACATATGAAGACAAGGATGGAGATTGGATGATGGTCGGGGATATTCCATGG  420

Query  523  GATATGTTTCTTGAAACCGTGAGAAGACTAAAGATCACGAGACCGGAGAGGTATTAA  579
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  GATATGTTTCTTGAAACCGTGAGAAGACTAAAGATCACGAGACCGGAGAGGTATTAA  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30879562770


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5