BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17600.1 Length=835 Score E Sequences producing significant alignments: (Bits) Value Ahg904722 jgi|Araly1|904722|Al_scaffold_0003_1850 804 0.0 > Ahg904722 jgi|Araly1|904722|Al_scaffold_0003_1850 Length=477 Score = 804 bits (435), Expect = 0.0 Identities = 463/477 (97%), Gaps = 0/477 (0%) Strand=Plus/Plus Query 103 ATGGAGGTCTCTAACTCTTGTTCTTCATTTTCTTCATCCTCTGTCGACAGTACTAAACCT 162 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGAGGTTTCTAACTCTTGTTCTTCATTTTCTTCATCCTCTGTCGACAGTACTAAGCCT 60 Query 163 TCTCCTTCTGAATCTTCTGTTAATCTCTCCCTTAGTCTCACATTTCCTTCTACTTCTCCA 222 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 61 TCTCCTTCTGAATCTTCTGTTAATCTCTCCCTTAGCCTCACTTTTCCTTCTACTTCTCCA 120 Query 223 CAAAGAGAAGCAAGACAAGATTGGCCACCGATAAAGTCTAGATTAAGAGATACACTAAAG 282 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 121 CAAAGAGAAGCAAGACAAGATTGGCCACCGATAAAGTCTCGATTAAGAGATACACTAAAG 180 Query 283 GGTCGTCGTCTTCTTCGTCGTGGTGATGACACTTCTCTCTTTGTTAAGGTTTATATGGAA 342 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGTCGTCGCCTTCTTCGTCGTGGTGATGACACTTCTCTCTTTGTTAAGGTTTATATGGAA 240 Query 343 GGTGTTCCCATTGGAAGAAAACTCGACCTTTGCGTATTCTCAGGCTACGAGAGTCTATTA 402 ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 241 GGTGTCCCCATTGGAAGAAAACTCGACCTTTGCGCATTCTCAGGCTACGAGAGCCTATTA 300 Query 403 GAAAATCTCTCTCACATGTTCGATACTTCAATCATCTGCGGTAATCGAGATCGAAAACAT 462 |||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||| Sbjct 301 GAAAATCTTTCTCACATGTTTGATACTTCAATCATCTGCGGTAACCGAGATAGAAAACAT 360 Query 463 CATGTTTTGACATATGAAGACAAGGATGGAGATTGGATGATGGTCGGAGATATTCCATGG 522 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 CATGTTTTGACATATGAAGACAAGGATGGAGATTGGATGATGGTCGGGGATATTCCATGG 420 Query 523 GATATGTTTCTTGAAACCGTGAGAAGACTAAAGATCACGAGACCGGAGAGGTATTAA 579 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GATATGTTTCTTGAAACCGTGAGAAGACTAAAGATCACGAGACCGGAGAGGTATTAA 477 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30879562770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5