BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17611.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929616 jgi|Araly1|929616|scaffold_302073.1 1637 0.0
> Ahg929616 jgi|Araly1|929616|scaffold_302073.1
Length=1048
Score = 1637 bits (886), Expect = 0.0
Identities = 995/1048 (95%), Gaps = 5/1048 (0%)
Strand=Plus/Plus
Query 131 AAAAGAATAATTACGAAGAAATGGAGAATTTTGGTGAAGGGAGAAGAAGTGGAGGCGGA- 189
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAGAATCATTACGAAGCAATGGAGAATTTTGGTGAAGGGAGAAGAAGTGGAGGCGGAG 60
Query 190 --ATGTTGCCGTTGCTGGCTCTAAGCGCCGTCGCGGAGTACTATAGACTACCGTGGAAAC 247
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGATGTTGCCGTTGCTGGCGCTAAGCGCCGTCGCGGAGTACTATAGACTACCGTGGAAAC 120
Query 248 CACCGGTGACGGCGAGTCTCCTGGCCGCGAACACTCTCGTTTATCTCAGGCCGGCGTTTA 307
| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 121 CGCCGGTGACGGCGAGTCTTCTGGCCGCGAACACTCTCGTCTATCTTAGGCCGGCGTTTA 180
Query 308 TCGATCCCGTTATTCCTCACATCAGTGAGGTCTGGTTCAATCCTCACCTCATCTTCAAGC 367
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCGACCCCGTTATTCCTCACATCAGTGAGGTCTGGTTCAATCCTCACCTCATCTTCAAGC 240
Query 368 ATAAGGACTTGAAGCGTTTATTTCTATCAGCGTTCTACCATGTTAACGAGCCTCACTTAG 427
|||| |||||||| ||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 241 ATAAAGACTTGAAACGTTTATTTTTATCAGCGTTCTATCACGTTAACGAGCCTCACTTAG 300
Query 428 TCTATAACATGATGTCACTTCTCTGGAAAGGTATCAAGCTTGAGACATCAATGGGAAGCA 487
|||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 301 TCTACAACATGATGTCCCTTCTCTGGAAAGGTATCAAGCTCGAGACATCTATGGGAAGCA 360
Query 488 GTGAGTTTGCTTCAATGGTCTTTACTCTTATTGGTATGTCTCAAGGAGTCACATTGTTGT 547
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 361 GTGAGTTTGCTTCAATGGTCTTTCCTCTTATTGGTATGTCTCAAGGAGTCACATTGCTGT 420
Query 548 TAGCCAAATCGCTTCTTCTCTTGTTTGACTATGACAGAGCTTACTACAACGAGTATGCGG 607
||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| || |
Sbjct 421 TAGCCAAATCGCTTCTTGTGTTGTTCGACTATGACAGAGCTTATTACAACGAGTACGCCG 480
Query 608 TTGGGTTCTCGGGTGTTCTCTTTGCTATGAAAGTTGTTCTTAATTCTCAAGCTGAGGATT 667
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 481 TTGGGTTCTCGGGGGTTCTCTTTGCTTTGAAAGTTGTTCTTAATTCTCAGGCTGAGGATT 540
Query 668 ACTCAAGTGTGTATGGTATCTTGGTTCCAACAAAGTATGCTGCTTGGGCAGAATTGATTC 727
||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 541 ACTCAAGCGTGTATGGTATCCTGGTTCCAACAAAGTATGCTGCTTGGGCAGAACTGA-TC 599
Query 728 -TAGTGCAGATGTTTGTACCTAACGCTTCGTTTCTTGGGCATTTGGGTGGAATCCTTGCT 786
||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 600 TTAGTGCAGATGTTTGTACCGAATGCTTCGTTTCTTGGGCATTTTGGTGGAATCCTTGCT 659
Query 787 GGTATTATCTATTTGAAGCTGAAAGGTTCTTACTCAGGCTCAGATCCAGTCACTATGGCG 846
|||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 GGTATTTTCTATATGAAGCTGAAAGGTTCTTACTCAGGCTCAGATCCAGTCACCATGGCG 719
Query 847 GTTAGAGGTGTATCTCGATTGGTGACGTGGCCCTTGAGGTTTCTGAATGGTATGGTTAGG 906
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 GTTAGAGGTGTAACTCGATTGGTGACGTGGCCCTTGAGGTTTCTGAACGGTATGGTTAGG 779
Query 907 TCTCGGAGAAGGAGGATTACGGGGAGAGGAAGAGTGGGAAGAGGTCAGACTGGGATAGCA 966
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 780 TCTCGGAGAAGGAGGATTACAGGGAGAGGAAGAGTGGGAAGAGGCCAGACTGGGATAGCA 839
Query 967 GGACCTGGTATTTGGAGATGTCAGTCGTGTACATATGACAATTCTGGTTGGTTAAGTGCT 1026
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGACCTGGTATCTGGAGATGCCAGTCGTGTACATATGACAATTCTGGTTGGTTAAGTGCT 899
Query 1027 TGCGAGATGTGTGGCTCGGGACGGGCTAGAGGAAATGGATGGTCACTGAATCAGGGACCA 1086
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 900 TGCGAGATGTGTGGCTCGGGACGGGCTAGAGGAGACGGATGGTCACTGAATCAGGGACCA 959
Query 1087 GCACTTTCTTCTTCTAATGATCTCCCTTTAGATGAGCTGCGCCGTCGAAGAGTAGAGAGG 1146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 960 GCACTTTCTTCTTCTAATGATCTCCCTTTAGATGAGCTGCGCCGTCGAAGAGTAGAAAGG 1019
Query 1147 TTTAGTTGATCTCGGGAGCGCATTCTTA 1174
||||||||||||| ||||| ||||||||
Sbjct 1020 TTTAGTTGATCTCTGGAGCTCATTCTTA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5