BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17620.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904726 jgi|Araly1|904726|Al_scaffold_0003_1854 1334 0.0
Ahg479216 jgi|Araly1|479216|fgenesh2_kg.3__1917__AT3G17400.1 479 2e-134
Ahg929891 jgi|Araly1|929891|scaffold_302348.1 128 9e-29
> Ahg904726 jgi|Araly1|904726|Al_scaffold_0003_1854
Length=1182
Score = 1334 bits (722), Expect = 0.0
Identities = 1040/1191 (87%), Gaps = 32/1191 (3%)
Strand=Plus/Plus
Query 1 ATGATGTCCGATCTTCCAAGAGATTTGTTGGAGGA-GAGACTCTCTAGGGTTCCGGTGAA 59
|||||||||||||||||||| |||||| ||||| | | || |||||| |||| ||||
Sbjct 1 ATGATGTCCGATCTTCCAAGTGATTTGGCAGAGGAGGTG-CTGTCTAGGCTTCCAGTGAC 59
Query 60 ATCAT-TGAGA-GAAGCGCGATTTACCTGCAAAAATTGGAAAACATTATCCAAAAAGCGG 117
||| | | ||| | | ||| | | |||||||| ||||| || || |||||| |||||
Sbjct 60 ATC-TCTAAGAGGGTTC-CGAGCTGCTTGCAAAAAATGGAACACTTTGTCCAAAGAGCGG 117
Query 118 AGCTTTACAAAGAAGCACCTTGCTCAGGAAGCAACATCAAG-GG-A--AAGTGAGTTTAA 173
|||||||||| ||| |||||||||| |||||| | | || || | ||| |||||||
Sbjct 118 AGCTTTACAAGGAAACACCTTGCTC---AAGCAAAAGC-AGCGGCAGCAAGGGAGTTTAT 173
Query 174 GGTTGTCATGGTCTTGCATTGTAAGGTTTATCTAACGAGCATCAACCTCCGTGGAATTCA 233
||| |||||||| || ||| | ||||||| | | | ||||||| |||| |||| ||||
Sbjct 174 GGTGGTCATGGTGATGAATTCTCGGGTTTATTTGATGGGCATCAATCTCCATGGAGTTCA 233
Query 234 CAACG-GCTTTGACCCGTCTATAAACCGTCAAGCTAAACTTGTTAGCCTAAACGGTACAG 292
| | | || ||||||| |||||||||| ||| | |||||| ||||||||||||| | |||
Sbjct 234 CGA-GAGCGTTGACCCATCTATAAACCATCAGGGTAAACTCGTTAGCCTAAACGATTCAG 292
Query 293 ATCAGATCGATATATCTGA-AGTATATCACTGCGACGGTTTACTGTTATGTATCTCGAAA 351
||| | ||||||||||| | |||||||||||||||||||||||||||||| ||| |||||
Sbjct 293 ATCGGGTCGATATATCT-AGAGTATATCACTGCGACGGTTTACTGTTATGCATCGCGAAA 351
Query 352 GACTACACTAGGGTCGTGGTTTGGAATCCGTA-TAGGAGCCAAACTTTGTGGCTCAAACC 410
||||| ||||| ||||||||||||||||||| | | || |||||||||||||||||||
Sbjct 352 AACTACTCTAGGTTCGTGGTTTGGAATCCGTACT-CGTGCAAAACTTTGTGGCTCAAACC 410
Query 411 CAGTAGTCCTGACCATAGAATGGACTGGTATATC-TGTGCTATAGGATACGAGAAGCGTA 469
||| ||||| ||| |||| |||||||||||| | | ||||||||||||||||||||| |
Sbjct 411 CAGAAGTCCCCACCCTAGATTGGACTGGTATA-CATATGCTATAGGATACGAGAAGCGCA 469
Query 470 AATCAAGCC-TACGCTACAAAGTTTTGCGATTCGTTGATTTTGCCGAAGA-AGAATTTGT 527
||||| ||| | ||||||||||||| ||||||||||| |||||||| | |||||||||
Sbjct 470 AATCATGCCGGA-ACTACAAAGTTTTGAGATTCGTTGATCTTGCCGAA-ACAGAATTTGT 527
Query 528 TGAGTACGAAATATACGAGTTAAAGTCTAATTCATGGAGGGTTCTCGATGTCACTTCCGA 587
| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 528 TAAGTACGAAATCTACGAGTTAAAGTCTAATTCATTGAGGGTTCTTGATGTCACTTCCGA 587
Query 588 CTGGGAAGTAGAGTTTTATGCACGAGGTGTCTCTCTCAAGGGAAATACTTATTGGTTTGC 647
|||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 588 CTGGAAAATAGAGTTTTATGCACGTGGTGTCTCTCTTAAGGGAAATACTTATTGGTTTGC 647
Query 648 TACAGACAAGTTTCCAGAAATCAGCAGTAATCTTATACATAGTGTTTATTTCTTGCTCTG 707
||||||||||||||| |||||||||| |||| ||| |||||||||| |||||||| ||||
Sbjct 648 TACAGACAAGTTTCCGGAAATCAGCAATAATGTTAGACATAGTGTTGATTTCTTGATCTG 707
Query 708 TTTTAATTTTACATCGGAGAGATTTGGGCCGCGTCTTCATTTGCCGTGTTACCCTATGGA 767
|||||||||||||||||||||||||||||||||||||| |||||||| |||| || || |
Sbjct 708 TTTTAATTTTACATCGGAGAGATTTGGGCCGCGTCTTCCTTTGCCGTTTTACTCTCTGAA 767
Query 768 TGTAGATACTGTGAGTCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTTATTTCAGCG 827
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TGGAGATACTGTGAGTCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTTATTTCAGCG 827
Query 828 TAAG-GACAACTTACATATGGAGATTTGGGTTACGACTAAGATTGAACCTGAAGAGGTGA 886
| ||||| ||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 828 CG-GTGACAATTTAAAGATGGAGATTTGGGTTACGACTAAGATTGAACCTGAAGTGGTGT 886
Query 887 TGTGGAGCAAGTTGTTCTTAGCAGTGGATATGCAACCACTCACTGATTTT-AAGTTTGGA 945
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 887 TGTGGGGCAAGTTGTTCTTAGCAGTGGATATGCAACCACTCACTGATTTTCAATTTTT-A 945
Query 946 -ATTGCAGATGCGAGTTTCATCATTGACGAAGAGAAGAAAGTTGTTGTAGTCTTTGCTAA 1004
|| ||||||| ||||||||||||||||||||| |||||||||||||||| |||| |||
Sbjct 946 TATA-CAGATGCAAGTTTCATCATTGACGAAGAGGAGAAAGTTGTTGTAGTGTTTGATAA 1004
Query 1005 AGACAAAGATGTAATGTATCCCACTCACAACACAGCTTACATCATTGGAGAGGATGGATA 1064
|||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 1005 AGACAAAGATGTAATGAATACCACTCGCAACACAGCTTACATCATTGGAGAGGATGGATA 1064
Query 1065 TTACAAAGAAGTGGATCTCGGAAAAACTACTGATAAAATTCGAGATCCACTTGTGTGCTC 1124
||||||||| ||||||||||||||| |||||||| || ||| | ||||||||||||||||
Sbjct 1065 TTACAAAGAGGTGGATCTCGGAAAATCTACTGATGAATTTCAATATCCACTTGTGTGCTC 1124
Query 1125 GTATGTTCCAAGCTCAGCGCAAATCAAGCAAGGAGGCAAAAGGAAGAAAAA 1175
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1125 GTATGTTCCAAGCTCAGCGCAAATCAAGCAAGGAAACAAAAGGAAGAAAAA 1175
> Ahg479216 jgi|Araly1|479216|fgenesh2_kg.3__1917__AT3G17400.1
Length=1119
Score = 479 bits (259), Expect = 2e-134
Identities = 464/559 (83%), Gaps = 29/559 (5%)
Strand=Plus/Plus
Query 469 AAATCAAGCCTAC-GCTACAAAGTTTTGCGATTCGTTG-A-TTTTG-CCGAAGAAGAATT 524
|||||| | || | |||||||| ||||| |||| |||| | ||| | | | || || | |
Sbjct 436 AAATCATG-CTGCAGCTACAAAATTTTGAGATTTGTTGAAGTTTCGTCTG-AG-AGTA-T 491
Query 525 TGTTGAGTACGAAATATACGAGTTAAAGTCTAATTCATGGAGGGTTCTCGATGTCACTTC 584
||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 492 TGTTGAGTACGAAATCTACGAGTTAAACTCTAACTCATGGAGGGTTCTTGATGTCACTTC 551
Query 585 CGACTGGGA-AGTAGAGTTTTATGCACGA-GGTGTCTCTCTCAAGGGAAATACTTATTGG 642
||||||| | | || ||||| ||||| | || || |||||||| ||||||||||||||
Sbjct 552 CGACTGGCATA-TACTGTTTTTTGCAC-ATGGCGTGACTCTCAAGAGAAATACTTATTGG 609
Query 643 TTTGCTACAGACAAGTTTCCAGAAATCAGCAGT-AATCTTATACATAGTGTTTATTTCTT 701
|||||| ||| |||| || ||||| || | | || | || | | | | | |||||
Sbjct 610 TTTGCTTTAGAGAAGTATCGAGAAAGAAG-A-TCAA-C-GGTAGAGATTCCTGACTTCTT 665
Query 702 GCTCTGTTTTAATTTTACATCGGAGAGATTTGGGCCGCGTCTTCATTTGCCGTGTTAC-C 760
| | |||||| |||||||| || || ||||| |||||||||| | |||||| || | |
Sbjct 666 GATATGTTTTGATTTTACAAAAGAAAGGTTTGGACCGCGTCTTCGTCTGCCGT-TT-CGC 723
Query 761 -C-TATGGATGTAGATACTGTGAGTCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTT 818
| ||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 724 TCTTAT-GATGAAGACACTGTGACTCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTT 782
Query 819 ATTTCAGCGTAAGGACAACTTACATATGGAGATTTGGGTTACGACTAAGATTGAACCTGA 878
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 783 ATTTCAGCGTGAGGACAACTTACATTTGGAGATTTGGGTTACGACTAAGATTGAGCCTGA 842
Query 879 AGAGGTGATG-TGGAGCAAGTTGTTCTTAGCAGTGGATATGCAACCACTCACTGATTTT- 936
|| |||| | |||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 843 AGTGGTG-TCATGGAGCAAGTTGTTTTTAGCAGTGGATATGGAACCACTCACTGATTTTC 901
Query 937 AAGTTTGGAATTGCAG-ATGCGAGTTTCATCATTGACGAAGAGAAGAAAGTTGTTGTAGT 995
|| |||||| || ||| | | ||||||| |||||||||||||||||||||| | ||||||
Sbjct 902 AA-TTTGGAGTTACAGGAGG-GAGTTTCTTCATTGACGAAGAGAAGAAAGTCGCTGTAGT 959
Query 996 CTTTGCTAAAGACAAAGAT 1014
|||| |||||| ||||||
Sbjct 960 TTTTGATAAAGATAAAGAT 978
> Ahg929891 jgi|Araly1|929891|scaffold_302348.1
Length=1220
Score = 128 bits (69), Expect = 9e-29
Identities = 432/595 (73%), Gaps = 74/595 (12%)
Strand=Plus/Plus
Query 523 TTTGTTGAGTACGAAATATACGAGTTAAAGTCTAATTCATGGAGGGTTCTCGATGTCACT 582
||| ||| ||||||||| || ||||||||||||||||||||||||||||| ||| |||||
Sbjct 524 TTT-TTGGGTACGAAATCTATGAGTTAAAGTCTAATTCATGGAGGGTTCTTGATATCACT 582
Query 583 TCCGACTGGGA-AGTAGAGTTTTATGCA-CGAGGTGTCTCTCTCAAGGGAAATACTTA-T 639
||| ||||| | ||||||||||| || || || || ||| | |||||||| ||||| |
Sbjct 583 CCCGGTTGGGATA-TAGAGTTTTAT-CAACGTGGCGTGTCTTTGAAGGGAAACACTTACT 640
Query 640 TGGTTTGCTACAGACAA----GT-TTCC-AGAA-ATC-AGCAGTAAT-CTTATA-CATAG 689
| ||||||| ||| || || ||| |||| || || || | | | | | |
Sbjct 641 TT-TTTGCTAAAGAGAAAATAGTGTTCGGAGAATATGGAG-AG-A-TGCC-AGAGCCGCC 695
Query 690 TGTTTATTT-CTTGCTCTGTTTTAATTTTAC-ATCGGAGAGATTTGGGCCGCGTCTTCAT 747
| |||||| ||| | ||||| ||||||| | ||||||| ||||| | | ||||| |
Sbjct 696 AGATTATTTACTT--T--GTTTTGATTTTACGA-CGGAGAGCTTTGGACAGTATCTTCCT 750
Query 748 TTGCCGTGTT-ACCCT-ATGGAT-GTAGATACTGTGAGTCTTTCT-AGTGTTAGAGAAGA 803
| |||| || | | | || || | |||||||| || ||| ||| | ||||| || |||
Sbjct 751 CTACCGT-TTGAGCATTAT--ATTGAAGATACTGGGACTCTATCTTA-TGTTAAAGGAGA 806
Query 804 GCAACTTGCTGTGTTATTTCAG--CGTAAGGACA-ACTTACATATGGAGATTTGGGTTAC 860
| |||| || | ||||| |||| | | || ||| | | | | ||||||| ||||||||
Sbjct 807 GAAACTCGCGGCGTTATATCAGAACATGAGTACATA-TGAG-T-TGGAGATATGGGTTAC 863
Query 861 GACTAAGATTGAACCTGAA-GAGGTGAT-GTGGAGCAAGTTGTTCTTAGCAGTGGATATG 918
| || |||||| ||| || | |||| | |||||| || ||||| | | ||| ||||||
Sbjct 864 AAGTATGATTGAGCCT-AATGTGGTG-TCGTGGAGAAACTTGTT-TAA--AGTTGATATG 918
Query 919 CAACCACTCACTGATTT---TA---AGTTTG-GAATTGCAGATGCGA-GTTTCATCATTG 970
|||||| ||||| ||| | |||||| | ||| | || || | ||| |||| |
Sbjct 919 AAACCACACACTGGTTTGGGTTTTCAGTTTGAGG-TTGAATCTG-GAAGCTTCTTCATCG 976
Query 971 ACGAAGAGAAGAAAGTTGTTGTAGTCTTTGCTAAAGACAAAGATGTAATGTATCCCA-CT 1029
|||||||||||||||| | || || |||| | | | |||| ||| | | | ||
Sbjct 977 ACGAAGAGAAGAAAGTCGCAGTCGTTTTTGAT-----CTA-GATG-AATCT--CAAAGCT 1027
Query 1030 CACAACACAGCTTACATCATTGGAGAGGATGGATA-TT-ACAAAGAAGTGGATCT 1082
|||| || |||||||||||||||||| ||||||| || | ||||| ||| ||||
Sbjct 1028 -ACAAAACGGCTTACATCATTGGAGAGAATGGATACTTGA-AAAGA-GTGAATCT 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5