BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17630.1
Length=2403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904725 jgi|Araly1|904725|Al_scaffold_0003_1853 3956 0.0
> Ahg904725 jgi|Araly1|904725|Al_scaffold_0003_1853
Length=2403
Score = 3956 bits (2142), Expect = 0.0
Identities = 2318/2405 (96%), Gaps = 4/2405 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAGCACCAACGTTACAGGGCAATGCCCGGGTCCAATGAAGGCTACCTCCAATGGA 60
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1 ATGGCAAGCACCAATGTTACAGGGCAATGCCCGGGTCCGATGAAGGCAACCTCTAATGGA 60
Query 61 GCCTTCCAAAACGAAAGCCCTCTTGATTTCGCGCTTCCTCTTATCATCCTACAAATCGTC 120
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 GCCTTCCAAAACGAAAGCCCTCTTGATTTCGCGCTCCCTCTGATCATCCTACAAATCGTC 120
Query 121 TTGGTGGTTGTGTTTACAAGGCTCTTAGCTTACTTTCTTAAGCCTCTCAAACAGCCCCGA 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TTGGTGGTTGTGTTTACAAGGCTCTTAGCTTACTTTCTTAAACCTCTCAAACAGCCCCGA 180
Query 181 GTCATTGCTGAGATCATTGGAGGGATACTGCTTGGACCTTCTGCACTAGGGA-GAAGCAA 239
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 181 GTCATTGCTGAGATCATTGGAGGGATACTGCTTGGACCTTCTGCACTA-GGACGAAGCAA 239
Query 240 GGCCTATCTTGACACCATCTTCCCAAAGAAGAGCTTGACCGTTTTAGACACACTCGCCAA 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGCCTATCTTGACACTATCTTCCCAAAGAAGAGCTTGACCGTTTTAGACACACTCGCCAA 299
Query 300 CATTGGTCTTCTGTTTTTCTTGTTCCTAGTTGGGCTTGAGCTTGACTTTGCAGCAATaaa 359
||| ||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 300 CATCGGTCTTCTGTTTTTCTTGTTCCTAGTTGGGCTTGAGCTTGACTTTACAGCGATCAG 359
Query 360 aaaaaCTGGAAAGAAATCACTATTGATAGCCATAGCTGGGATCTCACTTCCTTTTATAGT 419
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 360 AAAAACCGGAAAGAAATCACTATTGATAGCCCTAGCTGGGATCTCACTTCCTTTTGTAGT 419
Query 420 GGGTGTAGGCACATCTTTTGTTCTCAGTGCCACCATAAGCAAAGGAGTCGATCAGCTTCC 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 GGGTGTAGGCACATCTTTTGTTCTCAGTGCCACCATAAGCAAAGGAGTCAATCAGCTTCC 479
Query 480 TTTTATTGTCTTCATGGGTGTTGCCTTATCAATCACTGCCTTCCCTGTGCTTGCTCGTAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTTTATTGTCTTCATGGGTGTTGCCTTATCAATCACTGCCTTCCCTGTGCTTGCTCGTAT 539
Query 540 ACTAGCTGAGCTAAAGCTTCTAACAACTGACATTGGACGTATGGCAATGTCTGCAGCGGG 599
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 CCTAGCTGAGCTTAAGCTTCTAACAACTGACATTGGACGTATTGCAATGTCTGCAGCGGG 599
Query 600 AGTAAACGATGTTGCAGCTTGGATACTCCTTGCGCTTGCTATTGCTCTCTCAGGAGATGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGTAAACGATGTTGCAGCTTGGATACTCCTTGCGCTTGCTATTGCTCTCTCAGGAGATGG 659
Query 660 GACTTCTCCTCTTGTATCTGTTTGGGTTCTTCTCTGTGGAACTGGATTCGTGATCTTTGC 719
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 GACTTCTCCTCTGGTATCTGTTTGGGTTCTTCTCTGTGGATCTGGATTCGTGATCTTTGC 719
Query 720 AGTTGTGGCAATCAAACCTCTGCTTGCTTATATGGCTAGACGCTGTCCTGAGGGAGAGCC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGTTGTGGCAATCAAACCTCTGCTTGCTTATATGGCTAGACGCTGTCCTGAGGGAGAGCC 779
Query 780 TGTAAAGGAACTCTATGTTTGTGTCACTCTAACCGTGGTTTTAGCAGCAAGCTTTGTGAC 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGTGAAGGAACTCTATGTTTGTGTCACTCTAACCGTGGTTTTAGCAGCAAGCTTTGTGAC 839
Query 840 AGACACTATTGGGATACACGCGCTGTTCGGGGCGTTTGTGGTAGGTATAGTAGCTCCTAA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGACACTATTGGGATACACGCGCTGTTCGGGGCGTTTGTGGTAGGTATAGTAGCTCCTAA 899
Query 900 AGAAGGACCATTTTGCAGGATTTTGACTGAGAAGATAGAGGATCTTGTTTCGGGGCTTCT 959
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 900 AGAAGGACCATTTTGCAGGATTTTGACTGAGAAGATAGAGGATCTTGTCTCGGGGCTTCT 959
Query 960 TCTACCTCTGTATTTTGCGGCTAGCGGTCTCAAAACTGATGTAACAACGATCAGGGGAGC 1019
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 960 TCTACCTCTGTATTTTGCGGCTAGCGGTCTGAAAACTGATGTAACAACGATCAGGGGAGC 1019
Query 1020 ACAGTCATGGGGACTTCTAGTTCTTGTCATTCTCACCACTTGTTTCGGGAAGATTGTAGG 1079
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1020 ACAGTCATGGGGACTTCTAGTTCTTGTCATACTCACCACTTGTTTCGGGAAGATTGTAGG 1079
Query 1080 AACAGTTGGTTCCTCGATGCTCTGCAAGGTTCCTTTCAGAGAAGCCGTGACACTTGGATT 1139
||| |||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1080 AACCGTTGGTGCCTCGATGCTCTGCAAGGTTCCTTTCAGAGAAGCCATGGCACTTGGATT 1139
Query 1140 CCTTATGAATACCAAAGGTTTAGTAGAGCTCATTGTTCTTAACATTGGCAAGGACCGGAA 1199
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CCTCATGAACACCAAAGGTTTAGTAGAGCTCATTGTTCTTAACATTGGCAAGGACCGGAA 1199
Query 1200 GGTGCTGAATGATCAAGCATTTGCGATCTTAGTCCTAATGGCATTGTTCACAACCTTCAT 1259
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1200 GGTGCTGAATGATCAAGCGTTTGCGATCTTAGTTCTAATGGCATTGTTCACAACCTTCAT 1259
Query 1260 CACAACTCCAATTGTGATGCTTATTTACAAGCCTGCAAGAAAAGGAGCACCGTACAAGCA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CACAACTCCAATTGTGATGCTTATTTACAAGCCTGCAAGAAAAGGAGCACCGTACAAGCA 1319
Query 1320 CAGAACCATCCAAAGAAAAGATCATGATTCTGAGCTAAGGATACTTGCTTGCTTCCACAG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CAGAACCATCCAAAGAAAAGATCATGATTCTGAGCTAAGGATACTTGCTTGCTTCCACAG 1379
Query 1380 TACCCGTAACATCCCCACATTGATCAATCTGATCGAATCATCAAGAGGAACAGGCAAAAA 1439
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TACCCGCAACATCCCCACATTGATCAATCTGATCGAATCATCAAGAGGAACAGGCAAAAA 1439
Query 1440 GGGACGCCTCTGCGTTTACGCGATGCATCTGATGGAGCTTTCTGAACGGTCATCAGCGAT 1499
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 1440 GGGACGCCTCTGCGTTTACGCGATGCATCTAATGGAGCTTTCTGAACGTTCATCAGCAAT 1499
Query 1500 CGCGATGGTTCACAAAGCTCGAAACAATGGTCTCCCAATCTGGAATAAGATCGAGAGATC 1559
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TGCTATGGTTCACAAAGCTCGGAACAATGGTCTCCCAATCTGGAATAAGATCGAGAGATC 1559
Query 1560 AACGGACCAGATGGTGATTGCCTTCGAGGCTTACCAGCATCTACGAGCAGTAGCGGTTAG 1619
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1560 AACGGACCAGATGGTGATTGCGTTCGAGGCGTACCAGCATCTACGAGCAGTAGCGGTTAG 1619
Query 1620 ACCCATGACTGCAATCTCTGGCCTCAGCAGCATCCACGAGGACATATGCACAAGCGCGCA 1679
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1620 ACCCATGACTGCAATATCTGGTCTCAGCAGCATCCACGAGGACATATGCACAAGTGCGCA 1679
Query 1680 TCAGAAACGAGTAGCGATGATACTGCTTCCGTTTCACAAGCATCAGAGAATGGACGGAGC 1739
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1680 TCAGAAACGAGTAGCGATGATACTGCTTCCGTTTCACAAGCATCAGAGAGTGGACGGAGC 1739
Query 1740 GATGGAGTCAATAGGACATAGGTTCCATGAAGTGAACCAACGGGTCTTGCAACGAGCTCC 1799
|||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1740 GATGGAGTCAATCGGACATGGGTTCCATGAAGTGAACCAACGGGTCTTACAACGAGCTCC 1799
Query 1800 TTGCTCAGTCGGGATTCTTGTGGACAGAGGACTCGGAGGAACCTCACAGGTTGTAGCCAG 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TTGCTCAGTCGGGATTCTTGTGGACAGAGGACTCGGAGGAACCTCACAGGTTGTAGCCAG 1859
Query 1860 CGAAGTGGCTTACAAAGTCGTGATTCCATTCTTTGGAGGCCTCGACGACCGAGAAGCTCT 1919
|||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct 1860 CGAAGTGGCTTACAAAGTCGTGGTTCCATTCTTTGGAGGCCTCGATGATCGAGAAGCTCT 1919
Query 1920 CGCATACGGGATGAAAATGGTGGAACATCCAGGAATCACACTAACTGTTTACAAATTTGT 1979
||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||
Sbjct 1920 CGCGTACGGGATGAAAATGGTGGAGCATCCGGGAATCACACTAACTGTTCACAAATTCGT 1979
Query 1980 AGCTGCgagaggaacattgaagagattcgagaagagtgaacacgacgaaaaggagaaaaa 2039
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 AGCTGCGAGAGGAACATTGAAGAGATTCGAGAAGAGTGAACACGACGAAAAGGAGAAAAC 2039
Query 2040 agagaaagagactgacgaagagTTTGTGAGGGAGTTGATGAATGATCCAAGAGGAAATGA 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 AGAGAAAGAGACTGACGAAGAGTTTGTGAGGGAGTTGATGAATGATCCAAGAGGAAATGA 2099
Query 2100 GTCATTGGCTTACGAGGAAAGAGTCGTTGAGAGCAAAGACGATATCATCGCGACACTTAA 2159
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2100 GTCATTGGCTTACGAGGAAAGAGTTGTTGAGAGCAAAGAAGATATCATCGCGACACTTAA 2159
Query 2160 ATCGATGAGTAAATGCAATCTCTTCGTCGTTGGAAGAAATGCAGCTGTTGCATCGTTGGT 2219
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 2160 ATCGATGAGTAAATGCAATCTCTTTGTCGTGGGAAGAAACGCAGCTGTTGCATCGTTGGT 2219
Query 2220 TAAGAGTACAGACTGTCCAGAGTTAGGACCAGTTGGACGCTTGTTGTCGTCATCAGAGTT 2279
||| ||||| || |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 2220 TAACAGTACGGATTGTCCAGAGTTAGGACCAGTTGGACGTTTGTTGTCGTCGTCGGAGTT 2279
Query 2280 TTCCACCACCGCGTCGGTGCTCGTCGTTCAGGGATATGATCCAGCAGCAGATACACGACC 2339
|||||||||||||||||| ||||||||||||||||| |||||| | || |||||||||||
Sbjct 2280 TTCCACCACCGCGTCGGTCCTCGTCGTTCAGGGATACGATCCAACGGCCGATACACGACC 2339
Query 2340 GCTCGTTGAGGAAGATGCAGAGT-ACGATCAGTCTTCCAGAGATATTTCAGACTTAACTG 2398
|||||| |||||||||| | ||| |||| ||| |||||||||||||||| |||| ||| |
Sbjct 2340 GCTCGTAGAGGAAGATGAA-AGTTACGAACAGGCTTCCAGAGATATTTCTGACTCAACCG 2398
Query 2399 CCTGA 2403
||||
Sbjct 2399 TCTGA 2403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90540512365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5