BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17640.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479245 jgi|Araly1|479245|fgenesh2_kg.3__1946__AT3G17640.1 1018 0.0
> Ahg479245 jgi|Araly1|479245|fgenesh2_kg.3__1946__AT3G17640.1
Length=963
Score = 1018 bits (551), Expect = 0.0
Identities = 600/624 (96%), Gaps = 2/624 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTACACTTTCTTTCTCCTTTTGCTCTCTCTTGTCCACTCCACTTTCTCTTCATTA 60
|||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct 1 ATGAGCTACACTTTCTTTCTCCTTCTGCTCACTCTCGTCCACTCCACTTTCTCTTCATTA 60
Query 61 GCTCCTACGGATCGAGCCGCGCTCCAATCCATCAGAGACTCTTTAACCGACATGCCCGGT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GCTCCTACGGATCGAGCCGCGCTCCAATCCATCAGAGACTCTTTAACCGACATGCCTGGT 120
Query 121 TCAGCCTTCTTCTCCTCTTGGGACTTCACAGTTCCTGACCCTTGTTCCTCCTTCTCTGGC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TCAGCCTTCTTCTCCTCTTGGGACTTCACAGTCCCTGACCCTTGTTCCTCCTTCTCTGGC 180
Query 181 CTTACCTGCTCTTCTCGCGGCCGTGTCACCGGCTTAACTCTTGGCCCTAATCTCTCAGGC 240
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTACCTGCTCTTCTCTCGGCCGTGTCACCGGCTTAACTCTTGGCCCTAATCTCTCAGGT 240
Query 241 TCTCTCTCCCCTTCCATCTCCATTCTAACCCACTTAACCCAACTCATTCTCTACCCCGGT 300
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 241 TCTCTCTCCCCTTCCATCTCCATTCTAACACACTTAAACCAACTCATTCTCTACCCTGGC 300
Query 301 TCAGTCACCGGTCCTCTCCCTCCTCGGTTCGATTCCCTCCCTCTCCTTCGAGTCATTTCC 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 TCAGTCACCGGTCCTCTCCCTCCTCGGTTCGATTCCCTCCCTCTCCTTAGAGTCATTTCC 360
Query 361 TTAACAAGAAACCGTTTAACCGGTCCTATACCCGTATCTTTCTCATCTCTCTCAAATCTC 420
|||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 361 TTAACAAGAAACCGCTTAACCGGTCCTATACCAGTTTCTTTCTCATCTCTCTCAAACCTC 420
Query 421 CACACTCTTGACCTTAGCTATAACCAACTCTCTGGCTCTCTCCCTCCTTTTCTCACCACT 480
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 421 CACACTCTTGACCTTAGCTATAACCAACTCTCAGGCTCTCTCCCTCCGTTTCTCACTACT 480
Query 481 CTTCCTCGACTCAAAGTCCTTGTTTTAGCCTCAAACCATTTCTCCAACAACCTTAAGCCT 540
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 481 CTTCCTCGACTCAAAGTCCTTGTTTTAGCCTCAAACCAGTTCTCCAACAACCTTAAACCT 540
Query 541 GTCTCTAGCCCATTGTTCCATTTAGACCTAAAGATGAACCAAATCTCCGGCCAACTCCCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTCTCTAGCCCATTGTTCCATTTAGACCTAAAGATGAACCAAATCTCCGGCCAACTCCCA 600
Query 601 CCCGCTTTCCCGA-CTACTCTCCG 623
||||||||||| | | ||||||||
Sbjct 601 CCCGCTTTCCCCATC-ACTCTCCG 623
Score = 569 bits (308), Expect = 1e-161
Identities = 330/341 (97%), Gaps = 0/341 (0%)
Strand=Plus/Plus
Query 851 GCCATAACTCAATCTCCGGAGAGCTAACTCCCGCGCTTGTCGGAGCAGAGGCTTTGTTCT 910
||||||||||||||||||||||| || |||| ||||| ||||||||||||||| |||||
Sbjct 623 GCCATAACTCAATCTCCGGAGAGTTACCTCCTGCGCTCGTCGGAGCAGAGGCTCAGTTCT 682
Query 911 TGAACAACAACCGTCTCACTGGAGACATTCCAGAGGAATACGTCAAGAGCTTAATCAACG 970
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TGAACAATAACCGTCTCACAGGAGACATTCCAGAGGAATACGTCAAGAGCTTAATCAACG 742
Query 971 GTACAACAAAACAGCTCTTCTTGCAACATAACTACTTCACGAGATTCCCTTGGAACTCTG 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GTACAACAAAACAGCTCTTCTTGCAACATAACTACTTCACGAGATTCCCTTGGAACTCTG 802
Query 1031 GTCTCCAACTACCAGACTCTGTTTCGCTCTGTTTGTCATATAACTGTATGGAGACAGATC 1090
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 803 GTCTCCAACTACCAGACTCTGTTTCGCTCTGTTTGTCATATAATTGTATGGAGACAGATC 862
Query 1091 CAGTCGTTGGTTTGTCCACGTGTCCGATCGAAGTTGCACCTCTGCTCTCAAGACCTGCTT 1150
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 863 CAGTCGTTGGTTTGTCCACGTGTCCGATCGAAGTTGCACCTCTGCTCTCAAGGCCTGCTT 922
Query 1151 CACAATGTTCAAGATTCTATAATCACAGCTCCACTGGTTAA 1191
||||||||||||||||||||||||||||||||||||| |||
Sbjct 923 CACAATGTTCAAGATTCTATAATCACAGCTCCACTGGCTAA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5