BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17650.1
Length=2396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479246 jgi|Araly1|479246|fgenesh2_kg.3__1947__AT3G17650.1 3965 0.0
Ahg473974 jgi|Araly1|473974|fgenesh2_kg.1__3928__AT1G48370.1 1962 0.0
> Ahg479246 jgi|Araly1|479246|fgenesh2_kg.3__1947__AT3G17650.1
Length=2367
Score = 3965 bits (2147), Expect = 0.0
Identities = 2299/2372 (97%), Gaps = 12/2372 (1%)
Strand=Plus/Plus
Query 1 GAGTCCAAGTTGACTCCTTCGAGCTTTGATTCTCGTTCCAATAATACTTCCTCCACCATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGTCCAAGTTGACTCCTTCGAGCTTTGATTCTCGTTCCAATAATACTTCCTCCACCATC 60
Query 61 TCTCCTCCTCTCGTTAGATCTAAGAAACAGAGAAAACAAGAGAGATAGAATGAGAAAGGG 120
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TCTCCTCCTCTC-TTAGATCTAAGAAACAGAGAAAACAAGAGAGAAAGAATGAGAAAGGG 119
Query 121 AGTTCTAAATCCTGACAGAGATCGTCAGA-TAGTGGAACATGAGTTGCAGGAAACTGGGT 179
|||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 120 AGTTCTAACTCCTGACAGAGATCGTCAGATTA-TGGAACATGAGTTGCAGGAAACTGGTT 178
Query 180 TTAGTCCagaaacagagaaagtcaagaacaagaattttgaagaagatgaagaggaagaag 239
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 179 TTAGTCCAGAATCAGAGAAAGTCAAGAACAAGAATTTTGAAGAAGATGAAGAGGAAGAGG 238
Query 240 atgaatctgtggagaagatatttgagagtagagaagTACCTTCTTGGAAGAAGCAGTTGA 299
||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct 239 ATGAATCTGTGGAGAAGATCTTTGAGAGTAGAGAAGTACCTTCGTGGACGAAGCAGTTGA 298
Query 300 CGGTGAGGGCTTTTGTGGTGAGCTTTATGCTAAGCATCTTGTTTAGTTTCATTGTTATGA 359
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 CGTTGAGGGCTTTTGTGGTGAGCTTTATGCTAAGCATCTTGTTTAGCTTCATTGTTATGA 358
Query 360 AGCTTAACCTCACAACGGGAATCATCCCTTCGCTCAATGTCTCTGCTGGTCTTTTGGGTT 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 359 AGCTTAACCTCACAACGGGAATCATACCTTCGCTCAATGTCTCTGCTGGTCTTCTGGGTT 418
Query 420 TCTTCTTTGTCAAGACATGGACTAAGATGCTCCATAGGTCTGGTCTCTTGAAACAGCCAT 479
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTTCTTTGTCAAGACGTGGACCAAGATGCTCCATAGGTCTGGTCTCTTGAAACAGCCAT 478
Query 480 TTACTCGCCAGGAGAATACTGTTATTCAGACCTGTGTTGTTGCCTCTTCTGGCATTGCCT 539
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 479 TTACTCGCCAGGAGAATACTGTTATTCAGACCTGTGTTGTTGCTTCTTCTGGCATTGCTT 538
Query 540 TCAGCGGAGGTTTTGGGACATACCTCTTTGGCATGAGTGAACGAATTGCGACCCAATCAG 599
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 TCAGCGGAGGGTTTGGGACATACCTCTTTGGCATGAGTGAAAGAATTGCGACCCAATCAG 598
Query 600 GAGATGTATCCCGTGGCGTCAAGGACCCTTCTTTGGGTTGGATTATCGGTTTCCTCTTTG 659
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAGATGTTTCTCGTGGCGTCAAGGACCCTTCTTTGGGTTGGATTATCGGTTTCCTCTTTG 658
Query 660 TCGTCAGCTTTCTTGGCCTCTTCTCAGTTGTCCCCCTGCGAAAGATAATGGTAATAGACT 719
| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 659 TTGTCAGCTTTCTTGGCCTCTTCTCAGTTGTTCCCCTGAGAAAGATAATGGTAATAGACT 718
Query 720 TCAAACTAACATACCCAAGTGGTACTGCAACAGCTCATCTTATCAACAGCTTTCACACCC 779
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 719 TCAAACTAACATACCCAAGTGGCACTGCAACAGCTCATCTTATCAACAGCTTTCACACCC 778
Query 780 CTCAAGGCGCCAAGCTAGCCAAGAAACAAGTGAGGGTGTTGGGGAAATTTTTCTCTTTAA 839
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 779 CTCAAGGCGCCAAGCTAGCCAAGAAACAAGTGAGGGTGTTAGGGAAATTTTTCTCTTTTA 838
Query 840 GCTTCTTCTGGAGTTTCTTCCAATGGTTCTTTACCGGAGGAGAAAATTGTGGGTTCTCCA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GCTTCTTCTGGAGTTTCTTCCAATGGTTCTTTACCGGAGGAGAAAATTGTGGGTTCTCCA 898
Query 900 ACTTCCCAACATTTGGACTCAAAGCTTACCAGTACAAGTTCTACTTTGATTTTTCAGCAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACTTCCCAACATTTGGACTCAAAGCTTACCAGTACAAGTTCTACTTTGATTTTTCAGCAA 958
Query 960 CATATGTTGGTGTTGGAATGATATGTCCGTATATAATCAACATCTCTGTCCTATTGGGAG 1019
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 CATATGTTGGTGTTGGAATGATATGTCCCTATATAATCAACATCTCTGTCCTATTGGGAG 1018
Query 1020 GAATCCTCTCTTGGGGGATAATGTGGCCCCTCATTGAAACCAAAAAGGGAGATTGGTTCC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAATCCTCTCTTGGGGGATAATGTGGCCCCTCATTGAAACCAAAAAGGGAGATTGGTTCC 1078
Query 1080 CTGATAATGTCCCATCCAGCAGCATGCATGGTCTCCAAGCTTACAAGGTGTTTATAGCTG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CTGATAATGTCCCATCCAGCAGCATGCATGGTCTCCAAGCTTACAAGGTGTTTATAGCTG 1138
Query 1140 TTGCTATAATCCTAGGAGATGGCTTATACAACTTTTGCAAGGTGCTGAGCCGGACTCTTT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTGCTATAATCCTAGGAGATGGCTTATACAACTTTTGCAAGGTGCTGAGCCGGACTCTTT 1198
Query 1200 CAGGATTATTTGTACAGCTCCGAGGCCCTACTACATCTATTTCAAGAACCTCCTTCACAC 1259
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAGGACTATTTGTACAGCTCCGAGGCCCTACTACATCTATTTCAAGAACCTCCTTCACAC 1258
Query 1260 TTGAAGAAGACCCTCATGCTTCCCCACTAAGCCCAAAGCAATCTTATGATGACCAACGTC 1319
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1259 TTGAAGAAGACCCTCATGCTTCCCCATTAAGCCCAAAGCAATCTTATGATGACCAACGTC 1318
Query 1320 GTACAAGATTCTTCCTCAAAGACCAAATCCCTACTTGGTTTGCTGTTGGAGGTTATATCA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GTACAAGATTCTTCCTCAAAGACCAAATCCCTACTTGGTTTGCTGTTGGAGGTTATATCA 1378
Query 1380 CAATAGCTGCAACATCTACAGCGATACTCCCTCACATGTTCCACCAGCTGAGATGGTATT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CAATAGCTGCAACATCTACAGCGATACTCCCTCACATGTTCCACCAGCTGAGATGGTATT 1438
Query 1440 ACATTCTGGTCATCTATATCTGCGCGCCTGTCTTAGCTTTCTGTAACGCTTATGGAGCTG 1499
|||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 1439 ACATTCTGGTTATCTATATCTGTGCGCCTGTCTTGGCTTTCTGCAACGCTTATGGAGCTG 1498
Query 1500 GACTCACAGACTGGTCCTTGGCTTCAACTTATGGAAAG-TTAGCCATATTCACAATTGGA 1558
|||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||
Sbjct 1499 GACTCACAGACTGGTCCTTGGCTTCAACGTATGGAAAGCTT-GCCATATTCACAATTGGG 1557
Query 1559 GCTTGGGCTGGCTCTGAGCACGGTGGTATGCTGGCTGGTCTAGCAGCATGTGGTGTCATG 1618
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1558 GCTTGGGCTGGCTCTGAGCACGGTGGTATGCTGGCTGGTCTGGCAGCATGTGGTGTCATG 1617
Query 1619 ATGAACATAGTCTCGACAGCTTCGGATCTAACACAAGACTTCAAGACAGGCTACCTCACT 1678
||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1618 ATGAACATAGTCTCGACGGCTTCGGATCTGACACAAGACTTCAAGACAGGTTACCTCACT 1677
Query 1679 TTATCATCTCCAAAGTCAATGTTTGTGAGCCAAGTGATTGGAACAGCAATGGGTTGTGTG 1738
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1678 TTATCATCTCCAAAGTCAATGTTTGTGAGCCAAGTGATTGGAACAGCGATGGGTTGTGTG 1737
Query 1739 GTATCTCCTTGCGTGTTCTGGCTATTCTACAAAGCGTTTGATGATTTAGGCCTCCCAAAC 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 GTATCTCCTTGCGTGTTCTGGCTATTCTACAAAGCGTTTGATGATTTAGGCCTCCCAAAC 1797
Query 1799 ACTGAATACCCTGCTCCATTTGCTACTGTATATCGAAGCATGGCTAAACTAGGAGTGGAA 1858
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1798 ACTGAATACCCTGCTCCATTTGCTACCGTATATCGAAGTATGGCTAAACTAGGAGTGGAA 1857
Query 1859 GGTGTCGCATCTCTACCGAGAGAATGTCTTGTTCTATGCTACGCGTTCTTCGGTGTGGCG 1918
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1858 GGTGTCGCATCTCTACCGAGAGAATGTCTCGTTCTATGCTACGCGTTCTTCGGTGTGGCG 1917
Query 1919 ATTCTCGTAAACATAGTAAAAGATAGTCTCCATAGC-AATTGGGGAAGGTTCATTCCACT 1977
||||| |||||||||||||||||||||||||| ||| ||| |||||||||||||||||||
Sbjct 1918 ATTCTAGTAAACATAGTAAAAGATAGTCTCCAGAGCCAAT-GGGGAAGGTTCATTCCACT 1976
Query 1978 TCCCATGGCAATGGCTATACCGTTTTTCTTGGGACCTTACTTCGCAATTGACATGTGTGT 2037
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1977 TCCAATGGCAATGGCTATACCGTTTTTCTTGGGACCTTACTTTGCAATTGACATGTGTGT 2036
Query 2038 GGGAAGTTTGATACTTTTTATCTGGGAAAGAGTAGATGCAGCCAAGGCTGAAGCTTTTGG 2097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2037 GGGAAGTTTGATACTTTTTATCTGGGAAAGAGTAGATGCAGCCAAGGCTGAAGCTTTCGG 2096
Query 2098 GACAGCGGTGGCTTCTGGTTTGATATGCGGAGATGGCATTTGGTCTTTGCCGAGCTCCGT 2157
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2097 GACAGCAGTGGCTTCTGGTTTGATATGCGGAGATGGCATTTGGTCTTTGCCAAGCTCAGT 2156
Query 2158 GCTCGCTATAGCCGGAGTTAATCCTCCTGTTTGCATGAAGTTTCTCTCTTCTGCAACCAA 2217
|||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct 2157 GCTCGCTATAGCCGGAGTCAACCCTCCTGTTTGCATGAAGTTTCTCTCTGCTGCAACCAA 2216
Query 2218 TTCAAAGGTCGACAACTTCCTGA-AAGGATCCATTTAAAACTCAAATAAGTAACAACATC 2276
||||||||||||||||||| | | ||||||||| |||||||||||||||||||| | |||
Sbjct 2217 TTCAAAGGTCGACAACTTCTT-ACAAGGATCCACTTAAAACTCAAATAAGTAACCATATC 2275
Query 2277 TCAACCATGTGAAAGTGTAATGATGCTTCAATTGTTCTT-TT--ACCATTATGACGATTT 2333
|||| ||||||||||||||| |||||||||||| ||||| || ||||||||||||||||
Sbjct 2276 TCAAGCATGTGAAAGTGTAACGATGCTTCAATTTTTCTTCTTTTACCATTATGACGATTT 2335
Query 2334 TGAATGTAACTCGTATATAAAGATCTTAGATA 2365
||||||||||||||||||||||||||||||||
Sbjct 2336 TGAATGTAACTCGTATATAAAGATCTTAGATA 2367
> Ahg473974 jgi|Araly1|473974|fgenesh2_kg.1__3928__AT1G48370.1
Length=2345
Score = 1962 bits (1062), Expect = 0.0
Identities = 1834/2196 (84%), Gaps = 95/2196 (4%)
Strand=Plus/Plus
Query 110 ATGAGAAAGGGAGT-TCTAAATCCTGACAGAGATCGTCAGATAGTGGAACATGAGTTGCA 168
|||||||||||| | | ||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 46 ATGAGAAAGGGA-TCTTTAACTCCTGACAGAGATCGTCAGATTGAGGAACATGAGTTGCA 104
Query 169 GGAAACTGGGTTTAGTCCagaaacagaga-aagtca-a-gaacaagaat-tt------t- 217
||||||||| ||||||| || ||||||| | | | | |||||||||| || |
Sbjct 105 AGAAACTGGGATTAGTCCTGACACAGAGAGATTTAAGAGGAACAAGAATGTTGGACAATA 164
Query 218 -------gaag-a-a-gatgaaga-gga-a-g-a-a-gatgaatctgtgga-gaagatat 260
|||| | | || ||||| ||| | | | | || ||||||||||| | | ||||
Sbjct 165 CCAAAGAGAAGAAGAGGAAGAAGATGGAGAGGAACAGGAAGAATCTGTGGAGGGA-ATAT 223
Query 261 ttgagagtagagaagTACCTTCTTGGAAGAAGCAGTTGACGGTGAGGGCTTTTGTGGTGA 320
| ||||| ||||| || ||||| |||||||| ||||| ||| | |||||||||||||| |
Sbjct 224 TCGAGAGCAGAGAGGTTCCTTCGTGGAAGAATCAGTTAACGATTAGGGCTTTTGTGGTTA 283
Query 321 GCTTTATGCTAAGCATCTTGTTTAGTTTCATTGTTATGAAGCTTAACCTCACAACGGGAA 380
||||| ||||||||| |||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 284 GCTTTGCGCTAAGCATTTTGTTTAGCTTCATTGTGATGAAGCTTAACCTCACAACAGGAA 343
Query 381 TCATCCCTTCGCTCAATGTCTCTGCTGGTCTTTTGGGTTTCTTCTTTGTCAAGACATGGA 440
|||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 344 TCATTCCTTCGCTTAATGTCTCTGCTGGTCTTTTGGGGTTCTTCTTCGTCAAGACATGGA 403
Query 441 CTAAGATGCTCCATAGGTCTGGTCTCTTGAAACAGCCATTTACTC-GCCAGGAGAATACT 499
|||||||||| |||| |||||||| |||||||| || ||||| | | || ||||| ||
Sbjct 404 CTAAGATGCTTCATAAATCTGGTCTTTTGAAACAACCCTTTAC-CAGACAAGAGAACACC 462
Query 500 GTTATTCAGACCTGTGTTGTTGCCTCTTCTGGCATTGCCTTCAGCGGAGGTTTTGGGACA 559
||||||||||| ||||||||||| || || || |||||||| |||||||| ||||||||
Sbjct 463 GTTATTCAGACTTGTGTTGTTGCTTCCTCAGGAATTGCCTTTAGCGGAGGATTTGGGACT 522
Query 560 TACCTCTTTGGC-ATGAGTGAACGAATTGC-GACCCAATCAGGAGATGTAT-CCCGTGGC 616
||||| ||| || ||||| ||||||| || || |||||||||||| || | ||||||||
Sbjct 523 TACCTATTT-GCAATGAGCCAACGAATAGCTGA-CCAATCAGGAGACGT-TGCCCGTGGC 579
Query 617 GTCAAGGACCCTTCTTTGGGTTGGATTATCGGTTTCCTCTTTGTCGTCAGCTTTCTTGGC 676
|| ||||| ||||| |||||||||||||| | |||||||||||| |||||||||||||||
Sbjct 580 GTTAAGGATCCTTCATTGGGTTGGATTATAGCTTTCCTCTTTGTTGTCAGCTTTCTTGGC 639
Query 677 CTCTTCTCAGTTGTCCCCCTGCGAAAGATAATGGTAATAGACTTCAAACTAACATACCCA 736
|||||||| ||||| || || ||||||||||| ||||||||||||||||| |||||||
Sbjct 640 CTCTTCTCTGTTGTTCCTCTTAGAAAGATAATGATAATAGACTTCAAACTACCATACCCT 699
Query 737 AGTGGTACTGCAACAGCTCATCTTATCAACAGCTTTCACACCCCTCAAGGCGCCAAGCTA 796
||||| |||||||| ||||||||||||||||| ||||| || |||||||| || ||||||
Sbjct 700 AGTGGCACTGCAACTGCTCATCTTATCAACAGTTTTCATACTCCTCAAGGGGCAAAGCTA 759
Query 797 GCCAAGAAACAAGTGAGGGTGTTGGGGAAATTTTTCTCTTTAAGCTTCTTCTGGAGTTTC 856
|||||||||||||| | |||||||||||||| ||||| || |||||||| ||| |||||
Sbjct 760 GCCAAGAAACAAGTCCGAGTGTTGGGGAAATTCTTCTCCTTCAGCTTCTTTTGGGGTTTC 819
Query 857 TTCCAATGGTTCTTTACCGGAGGAGAAAATTGTGGGTTCT-CCAACTTCCCAACATTTGG 915
||||||||||||||||| | ||| |||||||||||||| | || ||||| || |||||
Sbjct 820 TTCCAATGGTTCTTTACTGCAGGTGAAAATTGTGGGTT-TAACAGTTTCCCTACTTTTGG 878
Query 916 ACTCAAAGCTTACCAGTACAAGTTCTACTTTGATTTTTCAGCAACATATGTTGGTGTTGG 975
||||| ||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 879 ACTCAGAGCTTACCAATATAAGTTCTACTTTGATTTTTCAGCAACATATGTGGGTGTTGG 938
Query 976 AATGATATGTCCGTATATAATCAACATCTCTGTCCTATTGGGAGGAATCCTCTCTTGGGG 1035
|||||||| || || ||||||||||||||| | ||||||| ||||| |||||||||||
Sbjct 939 TATGATATGCCCATACATAATCAACATCTCTCTTTTATTGGGTGGAATTCTCTCTTGGGG 998
Query 1036 GA-TAATGTGGCCCCTCATTGAAACCA-AAAAGGGAGATTGGTTCCCTGATAATGTCC-C 1092
| |||||||||| ||||||||||||| |||||| ||||||||||||| |||||| |
Sbjct 999 -ACTAATGTGGCCACTCATTGAAACCAGAAAAGG-AGATTGGTTCCCTTCTAATGTTGAC 1056
Query 1093 ATCCAGCAGCATGCATGGTCTCCAAGCTTACAAGGTGTTTATAGCTGTTGCTATAATCCT 1152
|| ||||||||| | ||||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct 1057 -TCTAGCAGCATGAACGGTCTTCAAGCTTACAAGGTGTTCATAGCTGTCGCTATGATCCT 1115
Query 1153 AGGAGATGGCTTATACAACTTTTGCAAGGTGCTG-AGCCGGACTCTTTCAGGATTATT-T 1210
||||||||| ||||||||||||||||||||| || | ||| || |||||||||||| | |
Sbjct 1116 AGGAGATGGTTTATACAACTTTTGCAAGGTGTTGTA-CCGAACCCTTTCAGGATTAGTCT 1174
Query 1211 -GTACAGCTCCGAGGCCCTACTACATCT-ATTTCAAGAACCTC-CTT-CACACTTGAAGA 1266
| ||| ||||||| || | | | ||| | |||||||| ||| ||||| |||||
Sbjct 1175 CG--CAGATCCGAGG---TA--A-AGCGGATT-CGAGAACCTCTCTTGCACAC--GAAGA 1223
Query 1267 AGACCCTCATGCTTCCCCACTAAGCCCAAAGCA-ATCTTATGATGACCAACGTCGTACAA 1325
|||||||| |||||||||| | | ||| ||| | ||||||||| |||||| | || ||||
Sbjct 1224 AGACCCTCCTGCTTCCCCATTGACCCCGAAG-ATATCTTATGACGACCAAAGACGAACAA 1282
Query 1326 GATTCTTCCTCAAAGACCAAATCCCTACTTGGTTTGCTGTTGGAGGTTATATCACAATAG 1385
|||||||||| || |||||||| ||| ||||||||||||||||||| ||| | |||
Sbjct 1283 GATTCTTCCTGAAGGACCAAATACCTTCTTGGTTTGCTGTTGGAGGCTATGTGGTTATAT 1342
Query 1386 CTGCAACATCTACAGCGATACTCCCTCACATGTTC-CACCAGCTGAGATGGTATTACATT 1444
||||| ||||||||| ||||| |||||||||||| | | ||||||||||||| ||||||
Sbjct 1343 CTGCAGTATCTACAGCTATACTTCCTCACATGTTCTCTC-AGCTGAGATGGTACTACATT 1401
Query 1445 CTGGTCATCTATATCTGCGCGCCTGTCTTAGCTTTCTGTAACGCTTATGGAGCTGGACTC 1504
| ||||||||| ||| || ||| ||||||||||||| || ||||| ||||| || |||
Sbjct 1402 ATAGTCATCTATGTCTTTGCTCCTATCTTAGCTTTCTGCAATGCTTACGGAGCCGGGCTC 1461
Query 1505 ACAGACTGGTC-CTTGGCTTCAACTTATGGAAAG-TTAGCCATATTCACAATTGGAGCTT 1562
|| || ||||| || | | ||||| ||||||||| || |||||||| || |||||||| |
Sbjct 1462 ACTGATTGGTCGCTAG-CATCAACCTATGGAAAGCTT-GCCATATTTACGATTGGAGCAT 1519
Query 1563 GGGCTGGCTCTGAGCACGGTGGTATGCTGGCTGGTCT-AGCAGCATGTGGTGTCATGATG 1621
||||||| || || || || ||| | ||||| || || ||| || ||||| |||||||||
Sbjct 1520 GGGCTGGTTCGGATCATGGAGGTCTTCTGGCAGG-CTTAGCGGCTTGTGGAGTCATGATG 1578
Query 1622 AACATAGTCTCGACAGCTTCGGATCTAACACAAGACTTCAAGACAGGCTACCTCACTTTA 1681
|||||||| ||||||||||| || || ||||| || |||||||| |||||||| || ||
Sbjct 1579 AACATAGTATCGACAGCTTCAGACCTCACACAGGATTTCAAGACTGGCTACCTGACATTG 1638
Query 1682 TCATCTCCAA-AGTCAATGTTTGTGAGCCAAGTGATTGGAACAGCAATGGGTTG-TGTGG 1739
|||||||||| || || ||||||||||||| |||||||||||||| ||||| || | |||
Sbjct 1639 TCATCTCCAAGAGCCA-TGTTTGTGAGCCAGGTGATTGGAACAGCTATGGGCTGCT-TGG 1696
Query 1740 TATCTCCTTGCGTGTTCTGGCTATTCTACAAAGCGTTTGATGAT-TTAGGCCTCCCAAAC 1798
| || || |||||||||| ||| |||||||| |||||||||||| || ||||| ||||||
Sbjct 1697 TTTCACCCTGCGTGTTCTTGCTTTTCTACAAGGCGTTTGATGATCTT-GGCCTTCCAAAC 1755
Query 1799 ACTGAATACCCTGCTCCATTTGCTACTGTATATCGAAGCATGGCTAAACTAGGAGTGGAA 1858
| ||||||||||||||| ||||||||||| || || || ||||||||||| || || |||
Sbjct 1756 AGTGAATACCCTGCTCCGTTTGCTACTGTGTACCGGAGTATGGCTAAACTCGGGGTTGAA 1815
Query 1859 GGTGTCGCATCTCTACCGAGAGAATGTCTTGTTCTATGCTACGCGTTCTTCGGTGTGGC- 1917
|||||| | ||||||| ||||| |||||||| || |||||| |||| |||||||| ||
Sbjct 1816 GGTGTCTCGGCTCTACCAAGAGACTGTCTTGTGCTGTGCTACTCGTTTTTCGGTGTAGCC 1875
Query 1918 G-ATTCTCGTAAACATAGTAAAAGATAGTCTCCAT-AGCAATTGGGGAAGGTTCATTCCA 1975
| | ||| | ||| || ||||||| |||| | | || ||||||||||| ||||
Sbjct 1876 GGA--CTCATTAACCTAATAAAAGACGGTCTTGGTGA-CAGGTGGGGAAGGTTTGTTCCT 1932
Query 1976 CTTCCCATGGCAATGGCTATACCGTTTTTCTTGGGACCTTACTTCGCAATTGACATGTGT 2035
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1933 CTTCCCATGGCAATGGCTATACCGTTTTTCTTAGGACCTTACTTTGCAATTGACATGTGC 1992
Query 2036 GTGGGAAGTTTGATACTT-TTTATCTGGGAAAGAGT-AGATGCAGCCAA-GGCTGAAGCT 2092
||||| |||||||| || ||| ||||||| || || |||||| ||||| ||||||||||
Sbjct 1993 GTGGGGAGTTTGATT-TTGTTTGTCTGGGAGAG-GTTAGATGC-GCCAAAGGCTGAAGCT 2049
Query 2093 TTTGGGACAGCGGTGGCTTCTGGTTTGATATGCGGAGATGGCATTTGGTCTTTGCCGAGC 2152
|||| ||||| |||||||||||||||||||| |||||||| || ||| ||||||| ||
Sbjct 2050 TTTGCAACAGCAGTGGCTTCTGGTTTGATATGTGGAGATGGAATCTGGACTTTGCCAAGT 2109
Query 2153 TCCGTGCTCGCTATAGCCGGAGTTAATCCTCCTGTTTGCATGAAGTTTCTCTCTTCTGCA 2212
|| ||||| |||||||| |||||||| |||||| ||||||||||||||||||| ||||
Sbjct 2110 TCAGTGCTTGCTATAGCTGGAGTTAAACCTCCTATTTGCATGAAGTTTCTCTCAGGTGCA 2169
Query 2213 ACCAATTCAAAG-GTCGACAACTTCCTGAAAGGATC 2247
|| ||| || || |||||||| |||||| |||||||
Sbjct 2170 ACTAAT-CACAGAGTCGACAAGTTCCTGCAAGGATC 2204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90273880650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5