BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17660.1
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318525 jgi|Araly1|318525|fgenesh1_pm.C_scaffold_3001541 1171 0.0
> Ahg318525 jgi|Araly1|318525|fgenesh1_pm.C_scaffold_3001541
Length=762
Score = 1171 bits (634), Expect = 0.0
Identities = 687/711 (97%), Gaps = 10/711 (1%)
Strand=Plus/Plus
Query 120 ATGAACAGGAAGGCCTCTGTTTCCAAGGAGCTCAACGCCAAGCATTCAAAGATATTGGAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACAGGAAGGCCTCTGTTTCCAAGGAGCTCAACGCCAAGCATTCAAAGATATTGGAA 60
Query 180 GCACTTTTGAAGCATCCAGACAATCGAGAATGTGCAGATTGTAGATCAAAGGCACCAAGA 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCACTTTTAAAGCATCCAGACAATCGAGAATGTGCAGATTGTAGATCAAAGGCACCAAGA 120
Query 240 TGGGCAAGTGTGAACCTTGGGATATTCATTTGTATGCAATGTTCTGGAATCCATCGTAGC 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TGGGCAAGTGTGAACCTTGGGATATTCATTTGTATGCAATGCTCTGGAATCCATCGTAGC 180
Query 300 CTTGGCGTCCACATCTCTCAGGTAAGGTCTATAACTCTGGATACATGGCTTCCAGATCAG 359
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCGGTGTCCACATCTCACAGGTAAGGTCTATAACTCTGGATACATGGCTTCCAGATCAG 240
Query 360 GTTGCTTTCATGAAATCTACCGGTAATGCTAAGGGAAATGAGTATTGGGAATCAGAATTG 419
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 241 GTTGCTTTCATGAAATCTACCGGTAATGCTAAGGCAAATCAGTATTGGGAATCAGAATTA 300
Query 420 CCTCAACATTTCGAGAGAAGTTCAAGCGACACGTTTATAAGAGCCAAATACAGTGAGAAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTCAACATTTCGAGAGAAGTTCAAGCGACACGTTTATAAGAGCCAAATACAGTGAGAAG 360
Query 480 AGATGGGTTTCACCGGGAGCGATTCAACCGGCTCCTATAGTTAGCCAGCTAAGCTGCAAA 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGATGGGTTTCACCGGGAGGGATTCAACCGGCTCCTATAGTTAGCCAGCTAAGCTGCAAA 420
Query 540 GTTAGTCACTTGGTAGAGAGTGGATATAAACCTGAAACTCCAAAGAAAGCTAGAACTCTT 599
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GTTAGTCACTTGGTAGAGAGCGGATATAAGCCTGAAACTCCAAAGAAAGCTAGAACTCTT 480
Query 600 TCACTTGACGAAGAGATCCTTCTTCATCATGTTCTTCAAGTAACACCTCCAGAAACGAGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCACTTGACGAAGAGATCCTTCTTCATCATGTTCTTCAAGTAACACCTCCAGAAACGAGA 540
Query 660 ACTCGTGCGGGTTCGGTAGATATGAAGGAGAATGTATATGTTGTACCTCTACCAG----- 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTCGTGCGGGTTCGGTAGATATGAAGGAGAATGTATATGTTGTACCTCTACCAGTGGGG 600
Query 715 A---A-TTCAAGAAACCAAATCAAAAGAATGAGAATTTCTCCAGTGAAGTAAACCAGAAT 770
| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 601 ATGGAATTCAAGAAACCAAATCAAAAGAATGAGATTTTCTCCAGTGAAATAAACCAGAAT 660
Query 771 AGAAGAACCACCATAGCACCACCGTCGAGCTGGGCTACTTTCGACTG-AAG 820
|||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 661 AGAAGAACCACCATAGCACCACCGTCAAGCTGGGCTACTTTCGACTGTAAG 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38885375340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5