BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17668.1
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479249 jgi|Araly1|479249|fgenesh2_kg.3__1950__AT3G17668.1 809 0.0
> Ahg479249 jgi|Araly1|479249|fgenesh2_kg.3__1950__AT3G17668.1
Length=584
Score = 809 bits (438), Expect = 0.0
Identities = 544/593 (92%), Gaps = 15/593 (3%)
Strand=Plus/Plus
Query 21 ACTGAAGAGTGACGGAGATGGCGGTGAACGCGTGTCTATCTCCGCCGGAGATGATGGCTG 80
|||||||||||||||||||||| | ||||||||||||| ||||||||| | | ||||| |
Sbjct 1 ACTGAAGAGTGACGGAGATGGCAGCGAACGCGTGTCTACCTCCGCCGGCGTTAATGGCCG 60
Query 81 TCCGGC-CAGGGGAAGGCGTTCCGAATTCAAAATCTACGCAGGGAAAAACTAGGCTCTAT 139
||| || ||| |||||| ||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 61 TCC-GCGCAGAGGAAGGTGTTCCAAATTCAAAATCGACGCAGGGACAAACTAGGCTCTAT 119
Query 140 CTCACCAAACCTTCATGGATAGTCAGAACTCAGTCTGGAGCTAAGACGTGTATGAAGTCG 199
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 120 CTCACCAAACCTTCATGGATAGTAAGAACTCAGTCAGGAGCTAAGACGTGTATGAAGAGG 179
Query 200 AAGGCGAAAGGACGATGCGTAATCTGCCATGGAAG-TGGAAGAGTCGATTGTTTCAATTG 258
||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 180 AAGGCGAAAGGCCGGTGCGTAATCTGCCATGG-AGCTGGAAGAGTCGATTGTTTCAATTG 238
Query 259 TTGTGGGAAAGGGAGGACTAATTGTGTGGATGTGGAAATGCTTCCAAGAGGAGAATGGCC 318
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 CTGTGGGAAAGGGAGGACTAATTGTGTGGATGTGGAAATGCTTCCAAAAGGAGAATGGCC 298
Query 319 TAAATGGTGCAAGAGTTGTGGAGGGAGTGGATTAAGTGACTGTTCTCGCTGTCTTGGCAC 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TAAATGGTGCAAGAGTTGTGGAGGGAGTGGATTAAGTGACTGTTCTCGCTGTCTTGGCAC 358
Query 379 CGGAGAGTACAGATACATCATGGGTTTCCGCTTCTTAAACCAAAACGATGATGCCGATCC 438
||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 CGGAGAGTATAGATACATTATGGGTTTCCGCTTCTTAAACCAAAACGATGATGGCGATCC 418
Query 439 ACAATAATGATTTGGAGAAACTCTTAACGATCATGTCCTTGCCAGTTTTTGTATATGTCC 498
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 419 ACAATTATGATTTGCTGAAACTCTTAA---TCATGTCCTTGCCAGTTTTTGTATATGTTC 475
Query 499 AATGAGGAGGCTTAAGACTTGTTTAGTAATGTTGTATATGGTT-GCTCCTGACTTGTTAA 557
||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 476 AATGATGAGGCTTAAGACTTGTTTAGTAATGT---ATATGGTTTGCTCCTGACTTGTTGA 532
Query 558 TATTGTTTGTAATCTTCAAGG--ATGT-TGTTGCAAGTAAAGAGAAATCACCA 607
|||||| || | ||||||||| || | |||||||||| |||||||||| |||
Sbjct 533 TATTGTCTGCAGTCTTCAAGGTCAT-TATGTTGCAAGTGAAGAGAAATCGCCA 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22301906445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5