BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17668.1 Length=610 Score E Sequences producing significant alignments: (Bits) Value Ahg479249 jgi|Araly1|479249|fgenesh2_kg.3__1950__AT3G17668.1 809 0.0 > Ahg479249 jgi|Araly1|479249|fgenesh2_kg.3__1950__AT3G17668.1 Length=584 Score = 809 bits (438), Expect = 0.0 Identities = 544/593 (92%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 21 ACTGAAGAGTGACGGAGATGGCGGTGAACGCGTGTCTATCTCCGCCGGAGATGATGGCTG 80 |||||||||||||||||||||| | ||||||||||||| ||||||||| | | ||||| | Sbjct 1 ACTGAAGAGTGACGGAGATGGCAGCGAACGCGTGTCTACCTCCGCCGGCGTTAATGGCCG 60 Query 81 TCCGGC-CAGGGGAAGGCGTTCCGAATTCAAAATCTACGCAGGGAAAAACTAGGCTCTAT 139 ||| || ||| |||||| ||||| ||||||||||| ||||||||| |||||||||||||| Sbjct 61 TCC-GCGCAGAGGAAGGTGTTCCAAATTCAAAATCGACGCAGGGACAAACTAGGCTCTAT 119 Query 140 CTCACCAAACCTTCATGGATAGTCAGAACTCAGTCTGGAGCTAAGACGTGTATGAAGTCG 199 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | Sbjct 120 CTCACCAAACCTTCATGGATAGTAAGAACTCAGTCAGGAGCTAAGACGTGTATGAAGAGG 179 Query 200 AAGGCGAAAGGACGATGCGTAATCTGCCATGGAAG-TGGAAGAGTCGATTGTTTCAATTG 258 ||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||| Sbjct 180 AAGGCGAAAGGCCGGTGCGTAATCTGCCATGG-AGCTGGAAGAGTCGATTGTTTCAATTG 238 Query 259 TTGTGGGAAAGGGAGGACTAATTGTGTGGATGTGGAAATGCTTCCAAGAGGAGAATGGCC 318 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 239 CTGTGGGAAAGGGAGGACTAATTGTGTGGATGTGGAAATGCTTCCAAAAGGAGAATGGCC 298 Query 319 TAAATGGTGCAAGAGTTGTGGAGGGAGTGGATTAAGTGACTGTTCTCGCTGTCTTGGCAC 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TAAATGGTGCAAGAGTTGTGGAGGGAGTGGATTAAGTGACTGTTCTCGCTGTCTTGGCAC 358 Query 379 CGGAGAGTACAGATACATCATGGGTTTCCGCTTCTTAAACCAAAACGATGATGCCGATCC 438 ||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 359 CGGAGAGTATAGATACATTATGGGTTTCCGCTTCTTAAACCAAAACGATGATGGCGATCC 418 Query 439 ACAATAATGATTTGGAGAAACTCTTAACGATCATGTCCTTGCCAGTTTTTGTATATGTCC 498 ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| | Sbjct 419 ACAATTATGATTTGCTGAAACTCTTAA---TCATGTCCTTGCCAGTTTTTGTATATGTTC 475 Query 499 AATGAGGAGGCTTAAGACTTGTTTAGTAATGTTGTATATGGTT-GCTCCTGACTTGTTAA 557 ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| | Sbjct 476 AATGATGAGGCTTAAGACTTGTTTAGTAATGT---ATATGGTTTGCTCCTGACTTGTTGA 532 Query 558 TATTGTTTGTAATCTTCAAGG--ATGT-TGTTGCAAGTAAAGAGAAATCACCA 607 |||||| || | ||||||||| || | |||||||||| |||||||||| ||| Sbjct 533 TATTGTCTGCAGTCTTCAAGGTCAT-TATGTTGCAAGTGAAGAGAAATCGCCA 584 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22301906445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5