BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17670.2
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479250 jgi|Araly1|479250|fgenesh2_kg.3__1951__AT3G17670.1 1195 0.0
> Ahg479250 jgi|Araly1|479250|fgenesh2_kg.3__1951__AT3G17670.1
Length=832
Score = 1195 bits (647), Expect = 0.0
Identities = 704/732 (96%), Gaps = 1/732 (0%)
Strand=Plus/Plus
Query 16 GTGGTTCGATATTCTTATCGTTATGTCTTCCGTCGCTTTGCCGGCGATGAGCTGCCGGAG 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGGTTCGATATTCTTATCGTTATGTCTTCCGTCGCTTTGCCGGCGATGAGCTGCCGGAG 60
Query 76 CTCAGGTGAACAAGTGAAGGAGATTCGCGTTTGTACGAATCGCACCTGCCGAAGACAAGG 135
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CTCAGGAGAACAAGTAAAGGAGATTCGCGTTTGTACGAATCGCACCTGCCGGAGACAAGG 120
Query 136 CTCCTTCCAGATTCTCGAGACTTTAACAGCTCTCGCACCTCCCGAACTCCGAGTCACTCA 195
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCCTTCCAGATTCTCGAGACATTAACAGCTCTCGCACCTCCCGAACTCCGAGTCACTCC 180
Query 196 CTGCGCTTGCCTCGGCCGATGCGGCTCCGGTCCAAACCTCGTGGCTCTCCCTCAAGGTCT 255
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 CTGCGCTTGCCTCGGCCGATGCGGCTCTGGTCCAAACCTCGTGGCTCTCCCTCAAGGTCT 240
Query 256 CATCCTACGTCACTGCGCCACGCCTTCTCGAGCTGCTGAAATTTTGTTCAGCCTATGTGG 315
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CATCCTCCGTCACTGCGCCACGCCTTCTCGAGCTGCTGAAATTTTGTTCAGCCTCTGTGG 300
Query 316 TGACGGTCGTGAAGCTTCTTCATCCTCCGCCGTCACAGACGCTCTCACGGCTTTAGCGTT 375
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 TGACGGTCGTGAAGCTTCTTCATCCTCCGCCGTCACAGACGCTCTCACCGCTTTAGCGTT 360
Query 376 AACCAACAATGCTCTCTCTCAAATCGATGCGGGAAATTTCTCTGAAGCCGAAGCACTTCT 435
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACCAACAATGCTCTCTATCAAATCGATGCGGGAAATTTCTCTGAAGCCGAAGCACTTCT 420
Query 436 CACTCAGGCTTTAGAGCTGAAACCCTACGGTGGCTTGCATAGAATATTCAAACACAGATC 495
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 421 CACTCAGGCATTAGAGCTGAAACCATACGGTGGCTTGCATAGAATCTTCAAACACAGATC 480
Query 496 AGTAGCAAAATTGGGAATGCTTGATTACTCTGGGGCTCTTGAAGATATAAGCCAAGCTCT 555
|||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 481 AGTAGCAAAACTGGGAATGCTTGATTATTCTGGGGCTCTTGAAGATATAAGCCGTGCTCT 540
Query 556 AGCTTTAGCTCCTAACTATTCTGAGCCCTACATATGCCAAGGGGATGTCTACGTAGCAAA 615
||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 541 AGCATTAGCTCCTAACTATTATGAGCCATACATATGCCAAGGGGATGTCTACGTAGCAAA 600
Query 616 AGGTCAATATGATCTTGCAGAGAAGTCATACTTGACATGTCTAGAGATAGATCCTTCTCT 675
|||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 601 GGGTCAATACGATCTTGCAGAGAAGTCATACGTGAAATGTCTAGAGATAGATCCTTCTCT 660
Query 676 TCGCAGATCGAAACCATTCAAGGCCCGGATTGCGAAACTTCAACAGAAAGTTGTTGAACT 735
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 661 TCGCAGATCGAAACCATTCAAGGCCCGGATTGCGAACCTTCAACAGAAAGTTGTTGAAGT 720
Query 736 AGATTTGA-ATA 746
|||| ||| |||
Sbjct 721 AGATGTGACATA 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5