BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17675.1

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg904732 jgi|Araly1|904732|Al_scaffold_0003_1860                    621    1e-177


> Ahg904732 jgi|Araly1|904732|Al_scaffold_0003_1860
Length=390

 Score =  621 bits (336),  Expect = 1e-177
 Identities = 372/390 (95%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  1    ATGCTTCATCAGGGAAGCCGATTCTCTAGCTTGATTATACTCTATGCCATTTTCTCTTTA  60
            |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct  1    ATGCTTAATCAGGGAAACCAATTCTCTAGCTTGATTATACTCTATGCCATTTTCTCTCTA  60

Query  61   TCTTCTCTCATGCTAAAATCTGAAGGAACAGAGCATATAGTTGGTGACAGCAATGGCTGG  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  61   TCTTCTCTCATGCTAAAATCTGAAGGAACAGAGCATATAGTTGGTGACAGCAGTGGCTGG  120

Query  121  GAACTCTTTACAAACTATACCAACTGGACACAGGGAAGAGAGTTTCATGTCGGCGATGTC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  GAACTCTTTACAAACTATACCAACTGGACACAGGGAAGAGAGTTTCATGTCGGTGATGTC  180

Query  181  TTAGTATTCAACTACAAAAGTGACCAGCATAATGTTATGCAAGTTAACTCTACAGCATAC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTAGTATTCAACTACAAAAGTGACCAGCATAATGTTATGCAAGTTAACTCTACAGCATAC  240

Query  241  ACAGATTGTGGATTAGACAATTACACAACTCTCTTCACCAAAGGTAACGACTCAATAATC  300
            |||||||||||| ||||||| |||||| |||||||||||||||| || ||||||||||||
Sbjct  241  ACAGATTGTGGAATAGACAACTACACATCTCTCTTCACCAAAGGCAATGACTCAATAATC  300

Query  301  CTATCAGAAGTTGGAAAGCTATGGTTCATCTGTGGAGTGGATGATCACTGTGTAAATGGC  360
             |||||||||||||| || ||||||||||||| | ||||| ||||||||||| |||||||
Sbjct  301  ATATCAGAAGTTGGAGAGTTATGGTTCATCTGCGCAGTGGGTGATCACTGTGAAAATGGC  360

Query  361  CAGAAGCTAAGCATTAATGTAGCTCCTTGA  390
            ||||||||||||||||||||||||||||||
Sbjct  361  CAGAAGCTAAGCATTAATGTAGCTCCTTGA  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13964945574


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5