BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17680.2
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479252 jgi|Araly1|479252|fgenesh2_kg.3__1953__AT3G17680.1 1646 0.0
> Ahg479252 jgi|Araly1|479252|fgenesh2_kg.3__1953__AT3G17680.1
Length=1197
Score = 1646 bits (891), Expect = 0.0
Identities = 1021/1084 (94%), Gaps = 7/1084 (1%)
Strand=Plus/Plus
Query 234 GACCTTGAAGCTCGGATGCAAATCCTGCGTGAGTCTGGTTTTCAAGAAAGCCAAGGAGAT 293
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 119 GACCTTGAAGCTCGGATGCAAATCCTGCGCGAGTCTGGTTTTGAAGAAAGCCAAGGAGAT 178
Query 294 GATGATACCTTTGCTCAACGAGCTGAATGGTTTTACCAGGGACGACCTTTGCTTCTCTCA 353
|||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 179 GATGATACATTTGGTCAACGAGCTGAATGGTTTTACCAGAGACGACCTCTGCTTCTC-AA 237
Query 354 -CTTTGTCTGGACCTGTACAACGGCTACGTCACTCTCTTGGGTCGTTCTTCTCATCAGAC 412
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 238 GCTTTGTCTTGACCTGTACAACGGCTACATCACTCTCTTGGGTCGTTCTTCTCATCAGAC 297
Query 413 CAGACTTAAACCCACT-ACTTCTCTTCCGAACCAGCTTCTCCAAGATGATGATGACTGCA 471
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 298 CAGACTTAAACCCA-TAACTTCTCTTCCCAACCAGCTTCTCCAAGATGATGATGACTGCA 356
Query 472 TTTCGGACATTGATTCCGTTAGTGAGGTCAGTTCTGAAGTTGAGAGCACCTTATCCTTTC 531
|||| ||| ||||||||||||||||| ||||||| ||||| ||||||||||| |||||||
Sbjct 357 TTTCAGACCTTGATTCCGTTAGTGAGATCAGTTCCGAAGTCGAGAGCACCTTGTCCTTTC 416
Query 532 AACAGATGAAAGATCCTACTGCGGTTTCTGAGAAAGTCGATGAGCTTGTATCCCAACTTG 591
|||||||| ||||| || |||||||||| |||||||| || ||||| |||||||||||||
Sbjct 417 AACAGATGCAAGATTCTGCTGCGGTTTCAGAGAAAGTTGAGGAGCTGGTATCCCAACTTG 476
Query 592 TGACAGCAAGCTTGGACAAAGAGATTCTGAAACACGAGTTACTTCACAAGGACCAACAGT 651
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 477 TGACAGCAAGCTTGGACAAAGAGATTCTGAAACACGAGTTACTTCACAAGGAGCAACAGT 536
Query 652 TTCATGAAGCCTCCAAGACTATAGAGCTGTTGAAGAAGTTTGTCATGTTGCTGGAGATGG 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTCATGAAGCCTCCAAGACTATAGAGCTGTTGAAGAAGTTTGTCATGTTGCTGGAGATGG 596
Query 712 AGAAAGAAGTGGCTGTGGAGGAAAACGCTAATCTTGGCTACAAACTCACTTCTCTCTTGG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGAAAGAAGTGGCTGTGGAGGAAAACGCTAATCTTGGCTACAAACTCACTTCTCTCTTGG 656
Query 772 AGGAGAACAGAGAGCTAGCCACTGAGGCATTGTTCATGAAGAACGAAGCTGTTGGGCTTG 831
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 657 AGGAGAACAGAGAGCTAGCGACTGAGGCGTTGTTCATGAAGAACGAAGCTGTTGGGCTTG 716
Query 832 CTAGGTGTGTGCTTAAGATGAGAGATGACCACTTTCACAAGGTCTGCATTCTCCAGAACC 891
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 717 CTAGGTGCGTGCTTAAGATGAGAGATGACCACTTTCACAAAGTCTGCATTCTCCAGAACC 776
Query 892 GCATCTACTCGCTTCAGGCATCTAGGAACTCAGAGCCCGTCTCTGATAAGGTCTCATACG 951
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 777 GCATCTACTCGCTTCAGGCATCCAGGAACTCAGAGCCTGTCTCTGATAAGGTCTCATCCG 836
Query 952 GATGCTTTGGCCTGGATAAGCATAAGACCAAAAAGAAGAAGGAGAACAAAACCGAAGAGA 1011
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GATGCTTTGGCCTGGATAAACATAAGACCAAAAAGAAGAAGGAGAACAAAACCGAAGAGA 896
Query 1012 AGAAGCCTGGATTCAAGTGGTTGAAGAAACTGAACACCATTAACCTGTTTACAAAGTGCA 1071
||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||
Sbjct 897 AGA--C-TGGATTCAAGTGGTTGAAGAAGCTGAACAACATTAACCTGTTTACAAAGCGCA 953
Query 1072 GCCTTAACCCATCGGCTGCTGCTCCATCATGCTGCACTTTCGACTTGCCTTATTAGCTTA 1131
|||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 954 ACCTTAACCCATCAGCTGCTGCTCCATCATGCTGCACTTTCGACATGCCTAATTAGCTTA 1013
Query 1132 ATCCTTTGCTGTATTAGTAAACTATGAACAATGCATACATAACTGTGTATGTTCTATCGC 1191
|||||||| ||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 1014 ATCCTTTGGTGTATTAGTAAACTAAGAACAATGCATACATGACTATGTATGTTCTATCGC 1073
Query 1192 CTTATTAGGTTTAATGCTTTTCAGTGCATCGCCCTGATGCACAGTTTGTTGTACCCCGCA 1251
|||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1074 CTTATTAGGTTTCATGCTTTTCAGTGCATCGCCCTGATGCACAGTTTGTTGTATACTGCA 1133
Query 1252 TACAATCTGTGGCTCCTTGATCCACATATGTATGGTTTTCATGACTCACTTATCTGGTTA 1311
|||||||||| ||||| ||| ||| ||||||||||||||||||| |||||||| || |
Sbjct 1134 AACAATCTGTGACTCCTCGATTTACAGATGTATGGTTTTCATGACTTACTTATCTAGTAA 1193
Query 1312 ACAC 1315
||||
Sbjct 1194 ACAC 1197
Score = 113 bits (61), Expect = 3e-24
Identities = 79/86 (92%), Gaps = 7/86 (8%)
Strand=Plus/Plus
Query 1 TGAACAAACGTGTCAGCTATC-T-TCT--CTCTC--TCACTATTTCTGGGTTGAAGAAGA 54
||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||| |
Sbjct 1 TGAACAAACGTGTCAGCTATCTTCTCTCCCTCTCTTTCACTATTTCTGGGTTGAAGAA-A 59
Query 55 TGAAGAACAAAGCATCCATGGAAGCT 80
||||||||||||||||||||||||||
Sbjct 60 TGAAGAACAAAGCATCCATGGAAGCT 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5