BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17690.1
Length=2719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341904 jgi|Araly1|341904|fgenesh1_pg.C_scaffold_3001667 3280 0.0
Ahg929630 jgi|Araly1|929630|scaffold_302087.1 1796 0.0
Ahg929632 jgi|Araly1|929632|scaffold_302089.1 1044 0.0
> Ahg341904 jgi|Araly1|341904|fgenesh1_pg.C_scaffold_3001667
Length=2262
Score = 3280 bits (1776), Expect = 0.0
Identities = 2059/2196 (94%), Gaps = 18/2196 (1%)
Strand=Plus/Plus
Query 384 GCTCACACTAGGACTTTCACTTCCAGAAACCGTAGCGTTTCTCTCTCAAACCCATCTTTC 443
|||||||||||| |||| |||||||| |||||||| |||||||||||||||||| |||||
Sbjct 64 GCTCACACTAGGGCTTTTACTTCCAGGAACCGTAGTGTTTCTCTCTCAAACCCAACTTTC 123
Query 444 TCCATTGACGGATTTGACAACTCAACTGTGACTTTAGGCTACACGGGTCCTCTTCGAACC 503
||| ||||||||||||||| ||| | |||| |||||| ||||| |||||||||||||||
Sbjct 124 TCCTTTGACGGATTTGACAGCTCGAGTGTGGTTTTAGGTTACACAGGTCCTCTTCGAACC 183
Query 504 CAGAGAATAAGACCTCCTTTAGTGCAAATGAGTGGTCCTATTCACTCTACTCGCAGAACA 563
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 184 CAGCGAATAAGACCTCCTTTAGTGCAAATGAGTGGTCCTCTTCACTCTACTCGCAGAACA 243
Query 564 GAACCTCTCTTCTCTCCTTCTCCTCAAGAATCTCCTGA-T--TCCT-CT--TCTACCGTT 617
|||||||||||||||||||||||||||||| ||||||| | |||| || |||||||||
Sbjct 244 GAACCTCTCTTCTCTCCTTCTCCTCAAGAACCTCCTGATTCCTCCTCCTCCTCTACCGTT 303
Query 618 GATGTTCCACCTGAAGATGATTTCGTCTTCAAAAACGCAAATCTCTTGAGATCTGGACAA 677
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 304 AATGTTCCACCTGAAGATGATTTTGTCTTCCAAAACGCAAATCTCTTGAGATCTGGACAG 363
Query 678 TTAGGGATGTGCAATGATCCTTACTGCACTACTTGCCCTTCTTACTACAACCGCCAAGCT 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTAGGGATGTGCAATGATCCTTACTGCACTACTTGCCCTTCTTACTACAACCGCCAAGCT 423
Query 738 GCTCAATTGCACACTTCCAGAGTTTCTGCCTCTAGGTTTCGCACTGTTCTGTATGGTGAT 797
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 424 GCTCAATTTCACACTTCCAGAGTTTCTACCTCTAGGTTTCGCACTGTTCTGTATGATGAT 483
Query 798 GCTAGAGGTTGGGCTAAGCGATTTGCCTCCTCTGTTCGTAGATGCTTACCCGGAATAATG 857
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 484 GCTAGAGGTTGGGCTAAGCGATTTGCCTCCTCTGTTCGTAGATGCTTACCTGGAATAATG 543
Query 858 AATCCTCATTCCAAATTTGTTCAAGTCTGGACTAGAGTCTTAGCCTTTTCAAGCTTAGTG 917
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AATCCTCATTCCAAATTCGTTCAAGTCTGGACTAGAGTCTTAGCCTTTTCAAGCTTAGTG 603
Query 918 GCCATTTTTATAGACCCTCTCTTCTTTTTCCTCTTATTGATCCAACAAGACAACAAATGC 977
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 604 GCCATTTTTATAGATCCTCTCTTCTTGTTCCTCTTATTTATCCAACAAGACAACAAATGC 663
Query 978 ATAGCGATTGATTGGCGTGCGACTAAAGTATTGGTGTCTCTTAGAAGTATAACGGATCTT 1037
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTAGCGATTGATTGGCGTGCGACTAAAGTATTGGTGTCTCTTAGAAGTATAACGGATCTT 723
Query 1038 ATATTCTTCATTAACATTCTGCTTCAGTTTAGGTTGGCCTATGTAGCTCCTGAGTCTAGA 1097
|||||| |||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 724 GTATTCTACATTAACATTCTACTTCAGTTTAGGTTGGCCTATGTAGCCCCTGAATCTAGA 783
Query 1098 ATAGTTGGTGCCGGCCAGTTAGTTGATCATCCAAGAAAAATTGCTCGCCATTACTTCCGA 1157
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 784 ATAGTTGGTGCCGGCCAGTTAGTTGATCATCCAAGAAAAATTGCTCGCCATTACTTCCAA 843
Query 1158 GGAAAGTTTCTCCTTGA-CATGTTCATAGTCTTTCCCATTCCACAGATAATGATATTAAG 1216
||||||||| | ||||| | |||||||||| || |||||||||||||||||||||||| |
Sbjct 844 GGAAAGTTTTTTCTTGATC-TGTTCATAGTGTTACCCATTCCACAGATAATGATATTATG 902
Query 1217 GATAATACCATTACACTTAGGCACACGCAGGGAAGAATCTGAGAAACAGATTTTACGCGC 1276
|||||||||| |||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 903 GATAATACCAGCACACTTGGGCACACGCAGGGAAGAATATGAGAAACAGATTATACGCGC 962
Query 1277 TACGGTTCTTTTTCAATACATTCCAAAGTTATATAGACTCTTACCTCTTCTTGCTGGACA 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TACGGTTCTTTTTCAATACATTCCAAAGTTATATAGACTCTTACCTCTTCTTGCTGGACA 1022
Query 1337 AACATCTACTGGCTTCATATTTGAGTCAGCTTGGGCTAATTTTGTTATTAATCTTCTCAC 1396
|||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1023 AACACCGACCGGCTTCATATTTGAGTCAGCCTGGGCTAATTTTGTTATTAATCTTCTCAC 1082
Query 1397 CTTCATGCTTGCTGGTCACGCTGTTGGCTCTTGCTGGTATCTCTCTGCTCTGCAGAGAGT 1456
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1083 CTTCATGCTTGCTGGTCACGCTGTTGGCTCTTGCTGGTATCTTTCTGGTCTGCAGAGAGT 1142
Query 1457 TAAGAAATGCATGCTGAATGCTTGGAATATTTCTGCGGATGAACGTAGAAATCTTATCGA 1516
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1143 TAAGAAATGCATGCTGAATGCTTGGAATATTTCTGTGGATGAACGTAGAAATCTTATCGA 1202
Query 1517 TTGTGCTCGTGGAAGTTATGCATC-GAAGTCACAACGAGATCTGTGGAGAGATAATGCTA 1575
|||| | ||||||||||||||||| || ||||||||||| ||| ||||||||| |||||
Sbjct 1203 TTGTTCGCGTGGAAGTTATGCATCCGA-GTCACAACGAGCTCTCTGGAGAGATGGTGCTA 1261
Query 1576 GTGTCAATGCTTGTTTTCAAGAAAATGGTTATACCTATGGGATCTATTTGAAGGCAGTGA 1635
|||||||||||||||||||||| | ||||| ||| |||||||||||| ||||||||||||
Sbjct 1262 GTGTCAATGCTTGTTTTCAAGAGAGTGGTTTTACTTATGGGATCTATCTGAAGGCAGTGA 1321
Query 1636 ATCTTACCAATGAATCTAGTTTCTTCACAAGATTCAGTTATTCTCTGTATTGGGGATTCC 1695
||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1322 ATCTTACCAATCAATCTAGTTTCTTCACAAGATACAGTTATTCTCTGTTTTGGGGATTCC 1381
Query 1696 AACAAATAAGCACACTTGCTGGAAACTTATCCCCAAGTTACTCAGTGGGTGAGGTTTTCT 1755
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1382 AACAAATAAGCACACTTGCTGGAAACTTATCCCCAAGTTACTCAGTGGGGGAGGTTTTCT 1441
Query 1756 TTACAATGGGTATCATTGGACTAGGGCTTTTGCTTTTTGCGCGGCTTATCGGTAACATGC 1815
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1442 TTACAATGGGTATCATTGGACTAGGGCTTTTGCTTTTTGTGCGGCTTATCGGTAATATGC 1501
Query 1816 ACAACTTCCTTCAATCACTTGATCGAAGGAGGATGGAAATGATGCTGAGAAAGCGTGATG 1875
| |||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1502 AGAACTTCCTTCAATCTCTTGATCGGAGGAGGATGGAAATGATGCTGAGACGGCGTGATG 1561
Query 1876 TGGAGCAGTGGATGAGCCATAGAC-GTTTGCCAGAAGATATAAGAAAGAGGGTGAGAGAG 1934
| |||||||||||||||||||||| ||| |||||||||||||||||| || ||| | |||
Sbjct 1562 TAGAGCAGTGGATGAGCCATAGACTGTT-GCCAGAAGATATAAGAAAAAGAGTGCGCGAG 1620
Query 1935 GTTGAGCGGTACACTTGGGCTGCGACAAGAGGAGTTAACGAAGAATTGCTATTTGAGAAC 1994
| ||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 1621 GCTGAGCGGTACAATTGGGCTGCGACTAGAGGAGTTAACGAAGAATTTCTATTCGAGAAT 1680
Query 1995 ATGCCTGATGACCTTCAAAGAGATATAAGAAGACACCTCTTCAAATTTCTCAAGAAGGTG 2054
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1681 ATGCCTGATGACCTTCAAAGAGATATAAGACGACACCTCTTTAAATTTCTCAAGAAGGTG 1740
Query 2055 AGAATATTTTCGTTGATGGATGAATCAGTTTTAGATTCAATCAGAGAGAGGCTGAAACAG 2114
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 1741 AGAATATTTTCGTTGATGGATGAATCAGTTTTAGATTCAATCCGTGAGAGGTTGAAACAG 1800
Query 2115 AGGACTTACATAAGGAGTAGCACGGTGTTGCATCACAGAGGTCTAGTAGAGAAAATGGTA 2174
||||| ||||||||| |||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 1801 AGGACATACATAAGGTGTAGCACGGTGTTGCACCGCAGAGGTCTAGTAGAAAAAATGGTA 1860
Query 2175 TTCATAGTGAGAGGTGAGATGGAGAGCATTGGAGAAGACGGTTCTGTTCTTCCTTTATCA 2234
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1861 TTCATAGTGAGAGGTGAGATGGAGAGTATTGGAGAAGACGGTTCTATTCTTCCTTTATCA 1920
Query 2235 GAAGGAGACGTTTGTGGTGAAGAACTTCTCACTTGGTGCCTC------TCTTCTATAAAC 2288
||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1921 GAAGGCGACGTTTGTGGTGAAGAACTCCTCACTTGGTGCCTCGAACGCTCTTCTATAAAC 1980
Query 2289 CCCGATGGGACGAGGATAAAGATGCCACCAAAGGGATTGGTTAGCAACAGAAATGTTAGG 2348
||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1981 CCCGATGGGACTAAGATAAAGATGCCAACAAAGGGATTAGTTAGCAACAGAAATGTTAGG 2040
Query 2349 TGTGTGACAAACGTGGAGGCGTTTTCGCTGAGTGTAGCAGATCTTGAAGATGTAACAAGC 2408
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 TGTGTAACAAATGTGGAGGCGTTTTCGCTGAGTGTAGCAGATCTTGAAGATGTAACAAGC 2100
Query 2409 TTGTTTTCAAGATTCTTAAGAAGCCATCGAGTGCAAGGAGCTATAAGGTACGAGTCTCCT 2468
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2101 TTGTTTTCAAGATTCTTAAGGAGTCATCGAGTGCAAGGAGCTATAAGGTACGAGTCTCCT 2160
Query 2469 TATTGGAGGTTACGAGCAGCTATGCAGATCCAAGTGGCTTGGAGATACCGAAAGAGACAA 2528
|||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct 2161 TATTGGAGACTACAAGCAGCGATGCAGATTCAAGTGGCTTGGAGATACCGAAAGAGACGA 2220
Query 2529 CTCCAGAGATTAAACACTGCTCACTCCAATTCCAAC 2564
|| |||||||| |||||||||| || | |||||||
Sbjct 2221 CTTCAGAGATTTTACACTGCTCAGTCTAGTTCCAAC 2256
> Ahg929630 jgi|Araly1|929630|scaffold_302087.1
Length=2348
Score = 1796 bits (972), Expect = 0.0
Identities = 1640/1954 (84%), Gaps = 80/1954 (4%)
Strand=Plus/Plus
Query 633 GATGATTTCGTCTTCAAAAACGCAAATCTCTTGAGATCTGGACAATTAGGGATGTGCAAT 692
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 378 GATGAGTTCGTTTTGAAACACGCAAATCTCTTGAGGTCTGGACAATTAGGGATGTGTAAT 437
Query 693 GATCCTTACTGCACTACTTGCCCTTCTTACTACAACCGCCAA-GCTGCTCAATTGCAC-A 750
||||||||||| |||||||||||||||||||||||||| || ||||||||| | | | |
Sbjct 438 GATCCTTACTGTACTACTTGCCCTTCTTACTACAACCG-TAAGGCTGCTCAAAT-CCCTA 495
Query 751 CTTCCAGAGTTTCTG-CC-TCTAGGTT--TCG---C--ACTGTTCTGTATGGTGATGCTA 801
|||| |||||||||| || | | | || || | | || |||||||| ||||||||
Sbjct 496 CTTCTAGAGTTTCTGCCCTTTTTGATTCCACGTTCCATAATGCTCTGTATGATGATGCTA 555
Query 802 GAGGTTGGGCTAA-GCGATTTGCCTCCTCTGTTCGTAGATGCTTACCCGGAATAATGAAT 860
||||||||| || | ||||||| ||||||||| ||||| |||||| ||||| ||||||
Sbjct 556 AAGGTTGGGC-AAGGAGATTTGCTTCCTCTGTTAATAGATACTTACCTGGAATCATGAAT 614
Query 861 CCTCATTCCAAATTTGTTCAAGTCTGGACTAGAGTCTTAGCCTTTTCAAGCTTAG-TGGC 919
|||||| ||||| |||||| |||||||| | |||| ||| ||||| |||| | | ||
Sbjct 615 CCTCATGCCAAAGAGGTTCAAACCTGGACTAAATTCTTCGCCCTTTCATGCTT-GTTAGC 673
Query 920 CATTTTTATAGACCCTCTCTTCTTTTTCCTC-TTATTGATCCAACAAG-ACAACAAATGC 977
||||||||||| ||||||||||| |||||| | | | ||||| || | |||||||||
Sbjct 674 TATTTTTATAGATCCTCTCTTCTTCTTCCTCATAAAAG-TCCAA-GAGCAAAACAAATGC 731
Query 978 A-TAGCGATTGATTGG-CGTGCGACTAAAGTATTGGT-GTCTCTTAGAAGTATAACGGAT 1034
| || |||||||||| || |||||||| ||| || | || |||||||| |||| |||
Sbjct 732 ATTA-TGATTGATTGGCCG-ATGACTAAAGCATTTGTAG-CTGTTAGAAGTGTAACAGAT 788
Query 1035 CTTATATTCTTC-ATTAACATTCTGCTTCAGTTTAGGTTGGCCTATGTAGCTCCTGAGTC 1093
|||||||| | || ||||||||||||||||| | |||||||| ||||||| ||||||
Sbjct 789 GTTATATTC-ACTATGAACATTCTGCTTCAGTTCCGATTGGCCTACGTAGCTCGTGAGTC 847
Query 1094 TA-GAATAGTTGGTGCCGGCCAGTTAGTTGA-TCAT-CCAAGAAAAATTGCTCGCCATTA 1150
|| | |||||||||| |||||||||||| | |||| |||| ||||||||| | |||||
Sbjct 848 TACG-GTAGTTGGTGCTGGCCAGTTAGTT-AGTCATCCCAA-AAAAATTGCCCTTCATTA 904
Query 1151 CTTCCGAGGAAAGTTTCTCCTTGACATGTTCATAGTCTTTCCCA-TTCCACAGATAATGA 1209
||| ||||||||||| |||||||| |||||||||| | ||| ||||||||||| |||
Sbjct 905 CTTTAGAGGAAAGTTTTTCCTTGACTTGTTCATAGT-GATGCCACTTCCACAGATATTGA 963
Query 1210 TATTAAGGATAATACCATTACACTTAGGCACA-CGCAGGG-AAGAATCTGAGAAACAGAT 1267
| ||| ||||||||||| ||| || || || | | ||| || | | || |||| | |
Sbjct 964 TTTTATGGATAATACCAGAACATTTGGGTGCATC-CGGGGCAA-ACTATGCGAAAAACCT 1021
Query 1268 TTTACGCGCTACGGTTCTTTTTCAATACATTCCAAAGTTATATAGAC-TCTTACC-TCTT 1325
| |||| ||| | |||||||| ||||||||||||||||||||||||| || |||| | ||
Sbjct 1022 TCTACGAGCTGCAGTTCTTTTCCAATACATTCCAAAGTTATATAGACTTC-TACCAT-TT 1079
Query 1326 CTTGCTGGACAAACATCTACTGGCTTCATATTTGAGTCAGCTTGGGCTAATTTTGTTATT 1385
||||||||||||||| | || || ||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTTGCTGGACAAACACCGACCGGATTCATATTTGAGTCAGCTTGGGCTAATTTTGTTATT 1139
Query 1386 AATCTTCTCACCTTCATGCTTGCTGGTCACGCTGTTGGCTCTTGCTGGTATCTCTCTGCT 1445
||||||||||| |||||||||||||| || | ||||||||||||||||||||| | || |
Sbjct 1140 AATCTTCTCACTTTCATGCTTGCTGGACATGTTGTTGGCTCTTGCTGGTATCTTTTTGGT 1199
Query 1446 CTGCAGAGAGTTAAGAAATGCATGCTG-AATGCTT--GG-AATATTTCTGCGGATGAACG 1501
|||||||||||||| ||||| | | | ||||||| || ||| ||| || | |||| |
Sbjct 1200 CTGCAGAGAGTTAATCAATGCCTTC-GAAATGCTTGCGGTAAT-TTTGAGC-G-TGAATG 1255
Query 1502 TAGA-AATCTTATCGATTGTGCTCGTGGAAGTTATGCATC-GAAGTCACAACGAGAT-CT 1558
| | ||||||| ||||||| | ||||| ||| ||| | | || | ||||| | |
Sbjct 1256 T-CATGATCTTATAGATTGTGGTAATGGAA-TTA-GCA-CTG-TGTTAGTACGAGCTAC- 1309
Query 1559 GTGGAGAGATAATGCTAGTGTCAATGCTTGTTTTCAAGAAAATGGTTATACC-TATGGGA 1617
|||||||||||||| |||| |||||||||||| |||||| |||||| | || ||||| |
Sbjct 1310 CTGGAGAGATAATGCGAGTGCCAATGCTTGTTTCCAAGAAGATGGTT-TTCCTTATGGAA 1368
Query 1618 TCTATTTGAAGGCAGTGAATCTTACCAATGAATCTAGTTTCTTCACAAGATTCAGTTATT 1677
||||||| || ||||| ||||| |||||| | |||||| |||||||||||| |||||| |
Sbjct 1369 TCTATTTAAAAGCAGTCAATCTAACCAATCATTCTAGTCTCTTCACAAGATACAGTTACT 1428
Query 1678 CTCTGTAT-TGGGGATTCCAACAAATAAGCACACTTGCTGGAAACTTA-TCCCCAAGTTA 1735
|||| | | ||||| ||||| ||||| ||||| |||||||||||| | | |||||| ||
Sbjct 1429 CTCTCT-TCTGGGGCTTCCAGCAAATCAGCACTCTTGCTGGAAACCAAGT-CCCAAGCTA 1486
Query 1736 CTCAGT-GGGTGAGGTTTTCTTTACAATGGGTATCATTGGACTAGGGCTTTTGCTTTTTG 1794
|| | ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1487 CTTTCTAGGG-GAGGTCTTCTTTACTATGGGTATCATTGGACTAGGGCTTTTGCTTTTTG 1545
Query 1795 CGCGGCTTATCGGTAACATGCACAACTTCCTTCAATCACTTGATCGAAGGAGGATGGAAA 1854
||| ||||| ||||| ||||| || ||||||||| | |||| | ||||| ||||||
Sbjct 1546 CGCTTCTTATTGGTAATATGCAAAATTTCCTTCAAGCTCTTGGTAAAAGGAATTTGGAAA 1605
Query 1855 TGATGCTGAGAAAGCGTGATGTGGAGCAGTGGATGAGCCATAGACGTTTGCCAGAAGATA 1914
||| ||| ||| |||||||||||| || ||||||||||||||||| |||||||| | ||
Sbjct 1606 TGACGCTAAGACGGCGTGATGTGGAACAATGGATGAGCCATAGACGGTTGCCAGATGGTA 1665
Query 1915 TAAGAAAGAGGGTGAGAGAGGTTGAGCGGTAC-ACTTGGGCTGCGACAAGAGGAGTTAAC 1973
|||||||||||||| |||||| |||||||| | || |||||||| || ||||| ||||||
Sbjct 1666 TAAGAAAGAGGGTGCGAGAGGCTGAGCGGTTCAAC-TGGGCTGCTACTAGAGGCGTTAAC 1724
Query 1974 GAAGAATTGCTATTTGAGAACATGCCTGATGACCTTCAAAGAGATATAAGAAGACACCTC 2033
||||||||||| ||||| || ||||||||||| || ||||||||||||||| ||||||||
Sbjct 1725 GAAGAATTGCTCTTTGAAAATATGCCTGATGATCTCCAAAGAGATATAAGACGACACCTC 1784
Query 2034 TTCAAATTTCTCAAGAAGGTGAGAATATTTTCGTTGATGGATGAATCAGTTTTAGATTCA 2093
|| |||||||||||||||||||||||||||||||||||||||||| || | |||||| ||
Sbjct 1785 TTTAAATTTCTCAAGAAGGTGAGAATATTTTCGTTGATGGATGAACCAATCTTAGATGCA 1844
Query 2094 ATCAGAGAGAGGCTGAAACAGAGGACTTACATAAGGAGTAGCACGGTGTTGCATCACAGA 2153
||| | |||||||||||||||||||| || ||| |||||||||| |||||||| | | ||
Sbjct 1845 ATCCGTGAGAGGCTGAAACAGAGGACATATATAGGGAGTAGCACAGTGTTGCACCGCGGA 1904
Query 2154 GGTCTAGTAGAGAAAATGGTATTCATAGTGAGAGGTGAGATGGAGAGCATTGGAGAAGAC 2213
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 GGTCTAGTTGAGAAAATGGTATTCATAGTGAGAGGTGAGATGGAGAGCATTGGAGAAGAC 1964
Query 2214 GGTTCTGTTCTTCCTTTATCA-GAAGGAGACGTTTGTGGTGAAGAACTTCTCACTTGGTG 2272
||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 1965 GGTTCTGTTCTTCCTTTAT-ATGAAGGAGACGTTTGTGGTGAAGAACTCCTCACTTGGTG 2023
Query 2273 CCTC------TCTTCTATAAACCCCGATGGGACGAGGATAAAGATGCCACCAAAGGGATT 2326
|||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2024 CCTCGAACGCTCTTCTGTAAACCCCGATGGGACGAGGATAAGGATGCCATCAAAGGGATT 2083
Query 2327 GGTTAGCAACAGAAATGTTAGGTGTGTGACAAACGTGGAGGCGTTTTCGCTGAGTGTAGC 2386
| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 2084 GCTTAGCAACAGAAATGTTAGGTGTGTGACAAATGTGGAGGCATTTTCGCTGAGTGTGGC 2143
Query 2387 AGATCTTGAAGATGTAACAAGCTTGTTTTCAAGATTCTTAAGAAGCCATCGAGTGCAAGG 2446
|||||||||||| |||||||||||||| || |||||||| || || ||| |||| |||||
Sbjct 2144 AGATCTTGAAGACGTAACAAGCTTGTTCTCGAGATTCTTGAGGAGTCATAGAGTCCAAGG 2203
Query 2447 AGCTATAAGGTACGAGTCTCCTTATTGGAGGTTACGAGCAGCTATGCAGATCCAAGTGGC 2506
||| ||||||||||| ||||| ||||||||| ||| ||| |||| |||||| ||||||||
Sbjct 2204 AGCCATAAGGTACGACTCTCCATATTGGAGGCTACAAGCTGCTAGGCAGATTCAAGTGGC 2263
Query 2507 TTGGAGATACCGAAAGAGACAACTCCAGAGATTA 2540
|||||||| || | ||||| || |||||||||
Sbjct 2264 GTGGAGATATCGTAGGAGACGGCTTCAGAGATTA 2297
> Ahg929632 jgi|Araly1|929632|scaffold_302089.1
Length=2263
Score = 1044 bits (565), Expect = 0.0
Identities = 862/1003 (86%), Gaps = 29/1003 (3%)
Strand=Plus/Plus
Query 1580 CAATGCTTGTTTTCAAGAAAATGGTTATACC-TATGGGATCTATTTGAAGGCAGTGAATC 1638
|||||||||||| |||||| |||||| | || ||||| || ||||| || ||||| ||||
Sbjct 1253 CAATGCTTGTTTCCAAGAAGATGGTT-TTCCTTATGGAATATATTTAAAAGCAGTCAATC 1311
Query 1639 TTACCAATGAATCTAGTTTCTTCACAAGATTCAGTTATTCTCTGTAT-TGGGGATTCCAA 1697
|||||||| | |||||| |||||||||||| ||| || ||||| | | ||||| |||||
Sbjct 1312 TTACCAATCATTCTAGTCTCTTCACAAGATACAGCTACTCTCTCT-TCTGGGGTTTCCAG 1370
Query 1698 CAAATAAGCACACTTGCTGGAAACTTA-TCCCCAAGTTACTCAGT-GGGTGAGGTTTTCT 1755
||||||||||| |||||||||||| | | |||||| |||| | ||| ||||| ||||
Sbjct 1371 CAAATAAGCACTCTTGCTGGAAACCAAGT-CCCAAGCTACTTTCTAGGG-GAGGTCTTCT 1428
Query 1756 TTACAATGGGTATCATTGGACTAGGGCTTTTGCTTTTTGCGCGGCTTATCGGTAACATGC 1815
|||| |||||||||| ||| || ||||||||||||||||| | ||||| ||||| ||||
Sbjct 1429 TTACTATGGGTATCACTGGCCTGGGGCTTTTGCTTTTTGCCCTTCTTATTGGTAATATGC 1488
Query 1816 ACAACTTCCTTCAATCACTTGATCGAAGGAGGATGGAAATGATGCTGAGAAAGCGTGATG 1875
| || ||||||||| | |||| | ||||| ||||||||| ||||||| ||||||||
Sbjct 1489 AAAATTTCCTTCAAGCTCTTGGTAAAAGGAATTTGGAAATGACGCTGAGACGGCGTGATG 1548
Query 1876 TGGAGCAGTGGATGAGCCATAGACGTTTGCCAGAA-GATATAAGAAAGAGGGTGAGAGAG 1934
||||||| ||||||||||||||||| |||||| || | |||||||||||||||| |||||
Sbjct 1549 TGGAGCAATGGATGAGCCATAGACGGTTGCCA-AATGGTATAAGAAAGAGGGTGCGAGAG 1607
Query 1935 GTTGAGCGGTAC-ACTTGGGCTGCGACAAGAGGAGTTAACGAAGAATTGCTATTTGAGAA 1993
| ||| |||| | || |||||||| || ||||| |||||||||||||| || ||||||||
Sbjct 1608 GCTGAACGGTTCAAC-TGGGCTGCTACCAGAGGCGTTAACGAAGAATTACTCTTTGAGAA 1666
Query 1994 CATGCCTGATGACCTTCAAAGAGATATAAGAAGACACCTCTTCAAATTTCTCAAGAAGGT 2053
||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1667 TATGCCTGATGATCTTCAAAGAGATATAAGACGACACCTCTTTAAATTTCTCAAGAAGGT 1726
Query 2054 GAGAATATTTTCGTTGATGGATGAATCAGTTTTAGATTCAATCAGAGAGAGGCTGAAACA 2113
|||||||||||||||||||||||||||| | |||||| | ||||| ||||||||||||||
Sbjct 1727 GAGAATATTTTCGTTGATGGATGAATCAATCTTAGATGCCATCAGTGAGAGGCTGAAACA 1786
Query 2114 GAGGACTTACATAAGGAGTAGCACGGTGTTGCATCA-CAGAGGTCTAGTAGAGAAAATGG 2172
|||||| |||||| ||| |||||| ||||||| || | |||||||||| ||||||||||
Sbjct 1787 GAGGACATACATAGGGAATAGCACAGTGTTGCG-CAGCGGAGGTCTAGTTGAGAAAATGG 1845
Query 2173 TATTCATAGTGAGAGGTGAGATGGAGAGCATTGGAGAAGACGGTTCTGTTCTTCCTTTAT 2232
||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1846 TATTCATTGTGAGAGGTGAGATGGAGAGCATTGGAGAAGACGGTTCTGTTCTTACATTAT 1905
Query 2233 CAGAAGGAGACGTTTGTGGTGAAGAACTTCTCACTTGGTGCCTCT--C--TT--CTATAA 2286
| ||||| ||||||||||| |||||||||||||||||||||||| | || || |||
Sbjct 1906 CGGAAGGCGACGTTTGTGGCGAAGAACTTCTCACTTGGTGCCTCAAACGCTTTTCTGTAA 1965
Query 2287 ACCCCGATGGGACGAGGATAAAGATGCCACCAAAGGGATTGGTTAGCAACAGAAATGTTA 2346
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 ACCCTGATGGGACGAGAATAAAGATGCCACCAAAGGGATTGGTTAGCAACAGAAATGTTA 2025
Query 2347 GGTGTGTGACAAACGTGGAGGCGTTTTCGCTGAGTGTAGCAGATCTTGAAGATGTAACAA 2406
||||||||||||| ||||| ||||||||||||||| |||||||||||||||| ||| | |
Sbjct 2026 GGTGTGTGACAAATGTGGAAGCGTTTTCGCTGAGTATAGCAGATCTTGAAGACGTAGCGA 2085
Query 2407 GCTTGTTTTCAAGATTCTTAAGAAGCCATCGAGTGCAAGGAGCTATAAGGTACGAGTCTC 2466
||||||| || |||||| |||| |||||| |||| |||||||| |||||||| |||||||
Sbjct 2086 GCTTGTTCTCGAGATTCCTAAGGAGCCATAGAGTCCAAGGAGCCATAAGGTATGAGTCTC 2145
Query 2467 CTTATTGGAGGTTACGAGCAGCTATGCAGATCCAAGTGGCTTGGAGATACCGAAAGAGAC 2526
||||||||||| |||| |||| || || ||||||||||||||||||||| |||||
Sbjct 2146 CTTATTGGAGGCTACG-GCAG--AT-----TC-AAGTGGCTTGGAGATACCGAAGGAGAC 2196
Query 2527 AACTCCAGAGATTAAACACTGCTCACTCCAATTCCAACCGTTA 2569
|| |||||| || ||| |||||| || | || || ||||||
Sbjct 2197 GGCTTCAGAGAGTATACAGTGCTCAGTCTAGTTACATCCGTTA 2239
Score = 566 bits (306), Expect = 4e-160
Identities = 673/842 (80%), Gaps = 58/842 (7%)
Strand=Plus/Plus
Query 648 AAAAACGCAAATCTCTTGAGATCTGGACAATTAGGGATGTGCAATGATCCTTACTGCACT 707
||| |||||||||||||| |||||||||||||||| || || |||||||||||||| |||
Sbjct 375 AAATACGCAAATCTCTTGGGATCTGGACAATTAGGTATTTGTAATGATCCTTACTGTACT 434
Query 708 ACTTGCCCTTCTTACTACAACCGCCAAGCTGCTCAATTGCAC-ACTTCCAGAGTTTCTGC 766
|||||||||||| | ||| ||| || | |||||| | | ||| |||||||||||||
Sbjct 435 ACTTGCCCTTCTGATTACTTCCGTAAAACAGCTCAA-ACCCCTACTCCCAGAGTTTCTGC 493
Query 767 C----TCTA-----GGTTTCGCACTGTTCTGTATGGTGATGCTAGAGGTTGGGCTAAGCG 817
| | || ||| | | || |||||||| |||||||| || |||||| | | |
Sbjct 494 CATTTTTTATTCCCCGTTCCATAATGCTCTGTATGATGATGCTAAAGATTGGGCGAGGAG 553
Query 818 ATTTGCCTCCTCTGTTCGTAGATGCTTACCCGGAATAATGAATCCTCATTCCAAATTTGT 877
|||||| ||||||||| ||||| |||||| ||||| |||||||||||| ||||| ||
Sbjct 554 ATTTGCTTCCTCTGTTAATAGATACTTACCTGGAATCATGAATCCTCATGCCAAAGAGGT 613
Query 878 TCAAGTCTGGACTAGAGTCTTAGCCTTTTCAAGCTTAG-TGGCCATTTTTATAGACCCTC 936
|||| |||||||| | |||| ||| ||||| |||| | | || ||||||||||| ||||
Sbjct 614 TCAAACCTGGACTAAATTCTTCGCCCTTTCATGCTT-GTTAGCTATTTTTATAGATCCTC 672
Query 937 TCTTCTTTTTCCTC-TTATTGATCCAACAAG-ACAACAAATGCA-TAGCGATTGATTGG- 992
||||||| |||||| | | | | ||| || | |||||||||| || ||||||||||
Sbjct 673 TCTTCTTCTTCCTCATAAAAG-TTCAA-GAGCAAAACAAATGCATTA-TGATTGATTGGC 729
Query 993 CG-TGCGACTAAAG-TATTGGT-GTCTCTTAGAAGTATAACGGATCTTATATTCTTCAT- 1048
|| || | |||||| | ||||| | || ||| |||| |||| ||| ||||| || || |
Sbjct 730 CGATG-G-CTAAAGCT-TTGGTAG-CTGTTAAAAGTGTAACAGATATTATAATC-TC-TG 783
Query 1049 T-AACATTCTGCTTCAGTTTAGGTTGGCCTATGTAGCTCCTGAGTCTA-GAATAGTTGGT 1106
| ||||||||||||||||| | ||||||||||||||| |||||||| | ||||||||
Sbjct 784 TGAACATTCTGCTTCAGTTCCGAATGGCCTATGTAGCTCGTGAGTCTACG-GTAGTTGGT 842
Query 1107 GCCGGCCAGTTAGTTGA-TCAT-CCAAGAAAAATTGCTCGCCATTACTTCCGAGGAAAGT 1164
|| |||||||||||| | |||| |||| ||||||||| | |||||||| |||||||||
Sbjct 843 GCTGGCCAGTTAGTT-AGTCATCCCAA-AAAAATTGCCCTTCATTACTTTAGAGGAAAGT 900
Query 1165 TTCTCCTTGACATGTTCATAGTCTTTCCCA-TTCCACAGATAATGATATTAAGGATAATA 1223
|| |||||||| |||||||||| | ||| ||||||||||| |||||||| ||||||||
Sbjct 901 TTTTCCTTGACTTGTTCATAGT-GATGCCACTTCCACAGATATTGATATTATGGATAATA 959
Query 1224 CCATTACACTTAGGCACACGCAGGGA-A------G-AATCT-GA-GAAACAGATTTTACG 1273
||| |||||| || || | |||| | | || || | |||| | |||||||
Sbjct 960 CCAGAACACTTGGGGGCA-TCTGGGATATCCGGGGCAAACTACACGAAAAACCTTTTACG 1018
Query 1274 CGCTACGGTTCTTTTTCAATACA-TTCCAAAGTTATATAGAC-TCTTACC-TCTTCTTGC 1330
|||| |||||||| ||||||| || ||||||||||||||| || |||| | |||||||
Sbjct 1019 CGCTGTAGTTCTTTTCCAATACACTT-CAAAGTTATATAGACTTC-TACCAT-TTCTTGC 1075
Query 1331 TGGACAAACATC-TACTGGCTTCATATTTGAGTCAGCTTGGGCTAATTTTGTTATTAATC 1389
|||||||||| | || || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1076 TGGACAAACA-CAGACCGGGTTCATATTTGAGTCAGCTTGGGCTAATTTTGTCATTAATC 1134
Query 1390 TTCTCACCTTCATGCTTGCTGGTCACGCTGTTGGCTCTTGCTGGTATCTCTCTGCTCTGC 1449
||||||| |||||||||||||| || | ||||||||||||||||||||| | || |||||
Sbjct 1135 TTCTCACTTTCATGCTTGCTGGACATGTTGTTGGCTCTTGCTGGTATCTTTTTGGTCTGC 1194
Query 1450 AG 1451
||
Sbjct 1195 AG 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102577029785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5