BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17710.1 Length=1231 Score E Sequences producing significant alignments: (Bits) Value Ahg929631 jgi|Araly1|929631|scaffold_302088.1 981 0.0 Ahg925882 jgi|Araly1|925882|scaffold_201443.1 743 0.0 Ahg315690 jgi|Araly1|315690|fgenesh1_pm.C_scaffold_2000723 507 1e-142 Ahg338904 jgi|Araly1|338904|fgenesh1_pg.C_scaffold_2001003 233 2e-60 > Ahg929631 jgi|Araly1|929631|scaffold_302088.1 Length=823 Score = 981 bits (531), Expect = 0.0 Identities = 690/763 (90%), Gaps = 25/763 (3%) Strand=Plus/Plus Query 30 TTTGTAAAACAGAGCACCTGATGGCGTCGGTGAAG-TTGCCGTGGGATTTGGAGGAAGAG 88 ||||||||||||| ||||| |||||||||| |||| || ||||||||||||||||||||| Sbjct 1 TTTGTAAAACAGAACACCTAATGGCGTCGGGGAAGCTT-CCGTGGGATTTGGAGGAAGAG 59 Query 89 ATACTGTCTCGGCTTCCACCTCGATCTCTTGTTCGGTTCAGGA-CCGTATGTAAACACTG 147 ||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 60 ATACTGTGTCGGCTTCCACCTCGATCTCTTGTTCGGTTCA-GATCCGTATGTAAACACTG 118 Query 148 GAACGGTCTTTTC-AGCGACAAGAGGTTTGTCAAAAAGCACTTG-GTCCGTGCCCGTCCC 205 ||||| ||||||| | ||| ||||| |||||||||||||||||| || ||| ||||| || Sbjct 119 GAACGATCTTTTCTA-CGATAAGAGCTTTGTCAAAAAGCACTTGAGT-CGTACCCGTACC 176 Query 206 CAATTCATCTTCCTTACCGAATCGAAGAAGATGTACTCGATAGAGATCGATCTGGGTGGA 265 |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| ||| Sbjct 177 CAATTCATCTTCCTGACCGAATCGAAGAAGATGTACTCGATAGACATCGATATGGGCGGA 236 Query 266 ACGATAGAGGTGCGTGAGGTACCCTACGATTTTCATTGTCAGCCTATGAAGAAGAATTTT 325 |||||||||||||||||| || |||| ||||||||||||||||||||||||| ||| ||| Sbjct 237 ACGATAGAGGTGCGTGAGCTATCCTATGATTTTCATTGTCAGCCTATGAAGACGAAATTT 296 Query 326 ACAACTATCATGGCTTGCGATGGGTTATTGTTTCGTGATTTTTGGAAACAAGGTGTTGCG 385 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 297 ACAACTATCATGGCTTGCGATGGGTTATTGTTTCGTGAAATTTGGAAACAAGGTGTTGCG 356 Query 386 GTTTGGAATCCGTGGTTGAGACAGGTTGGGTGGATCGAGTATGAGGATAAAGGTTTCCGT 445 ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| | Sbjct 357 GTTTGGAATTCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTCCAT 416 Query 446 -TTTTGCGGTGTAGGATACGATAGTTGTAAACCCGATAAGTGTTACAAGATCTTGGGGTA 504 |||| |||||||||||||||||||||| |||||| ||| ||||||||||||||||||| Sbjct 417 ATTTT-TGGTGTAGGATACGATAGTTGTAGACCCGAAAAGGGTTACAAGATCTTGGGGTA 475 Query 505 TTTTAATTGTA-CGCGTAGACTCAGCGACTCTCTCCAGGAAGGTTACT-ACCAAGCTGCG 562 | ||||||||| | |||||| |||||||||||||||||| |||||| | || ||| |||| Sbjct 476 TATTAATTGTATC-CGTAGAGTCAGCGACTCTCTCCAGGTAGGTTA-TGACAAAGTTGCG 533 Query 563 ATCTACGAGTGTGCATCGCAGGCGTTCAAATTTATTGATACCCCTAACCCTTTCAACCTG 622 |||||||||||||| || |||||||| || |||||||||| | ||||||||||| Sbjct 534 ATCTACGAGTGTGCTTCTCAGGCGTTGAAGTTTATTGATA---C---CCCTTTCAACCAC 587 Query 623 TGGCCCAACAAGGATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTGCTCATAACCAC 682 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 588 TGGCCCACCAAGGATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTGCTCATAATCGC 647 Query 683 CCTGAGACTCTTGAGTATTTCATCGAAACCTTTGATTTCTCCATGGAGATTTTCAAACCC 742 ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct 648 ---GAGACTCTTGAGTATTTCATCCAAACCTTTGATTTCTCGATGGAGATATTCAAACCC 704 Query 743 TTTTGTCTACTGCCGTGTCGGAAGGACT-TTGGTAGCAATGAA 784 |||||||| |||||||||| || ||||| ||| |||||||||| Sbjct 705 TTTTGTCTCCTGCCGTGTCAGATGGACTATTG-TAGCAATGAA 746 > Ahg925882 jgi|Araly1|925882|scaffold_201443.1 Length=859 Score = 743 bits (402), Expect = 0.0 Identities = 695/830 (84%), Gaps = 46/830 (6%) Strand=Plus/Plus Query 325 TACAACTATCATGGCTTGCGATGGGTTATTGTTTCGTGATTTTTGGAAACAAGGTGTTGC 384 ||| || |||| |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 35 TACCACCATCACCGCTTGCGATGGGTTATTGTTTCGTGACTTTTGGAAGCAAGGTGTTGC 94 Query 385 GGTTTGGAATCCGTGGTTGAGACAGGTTGGGTGGATCGAGTATGAGGATAAAGGTTTCCG 444 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct 95 GGTTTGGAATCCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTTCA 154 Query 445 TTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGATAAGTGTTACAAGATCTTGGGGTA 504 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 155 TTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGAAAAGAGTTACAAGATCTTGGGGTA 214 Query 505 TTTTAATTGTACGC-GTAGACTCAGCGACTCTCT-CCAGG-AAGGTTACTACCA-AGCTG 560 |||||||||| | | ||| | |||||||| || | ||| | ||| |||| | | || || Sbjct 215 TTTTAATTGT-CTCCGTAAAGTCAGCGACACT-TACCATGTAAG-TTACCGC-AGAGTTG 270 Query 561 CGATCTACGAGTGTGCATCGCAGGCGTTCAAATTTATTGATACCCCTAACCCTTTCAAC- 619 |||| ||||||||| | || || ||||| || || |||||| ||||| || || | Sbjct 271 CGATTTACGAGTGTTCGTCTCATGCGTTGAAGTTCATTGATGCCCCT-----TT-CA-CG 323 Query 620 CTGTGGCCCAACAAGG-ATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTGCTCATAA 678 | |||||||| || || | ||||||||| ||||||||||||| ||||||||| ||||| | Sbjct 324 CAGTGGCCCATCATGGCA-CCTTTGTCCTTGAACGGGAATCTCTATTGGCTTACTCATGA 382 Query 679 CCACCCTGAGACTCT-TGAGTATTTCATC-GAAACCTTTGATTTCTCCATGGAGATTTTC 736 ||| ||||||| | | ||||||||||| ||| | ||||||||||||| |||||| ||| Sbjct 383 --ACC-TGAGACT-TATAAGTATTTCATCCGAAGC-TTTGATTTCTCCAAGGAGATATTC 437 Query 737 AAACCCTTTTGTCTACTGCCGTGTCGGAAGGAC--TT-TGGTAGCAATGAACTTGTCCTG 793 ||||| |||||||| ||||| |||| ||| || || | | || | |||||||||||| Sbjct 438 AAACCTTTTTGTCTCCTGCCCTGTCTAAAGAACCGTTCTCG-AG-A-TGAACTTGTCCTC 494 Query 794 GCGGTTTTTAAG-GAAGATCGGTTTTCATTGTTAAAGCAATGCT--TCGAAACAACGAAG 850 ||||||||||| || ||||||||||| |||||||||||||| | | | |||| |||| Sbjct 495 GCGGTTTTTAAAAGA-GATCGGTTTTCGTTGTTAAAGCAATG-TAAT-GTAACAGGGAAG 551 Query 851 ATTGAGATTTGGGTAACAAAGATGAAGATTGATAGAGAGGAGGAAGTGGTGTGGATAAAG 910 ||||| ||||||||||| |||| |||||||||| | ||| ||||||| ||||||||||| Sbjct 552 ATTGATATTTGGGTAACGAAGAAGAAGATTGAT-G-GAG-AGGAAGTAGTGTGGATAAAC 608 Query 911 TTTATGACATTGCCGACAACCAACTTGCCTAA-TCTAGATGATAC-TTATTGTTGCAGTA 968 || ||||| ||||| ||||| |||||| |||| | | | | ||| || |||| ||| || Sbjct 609 TTGATGACTTTGCCAACAACTAACTTGTCTAAGT-TGGTTAATAAGTT-TTGTGGCATTA 666 Query 969 GTTACTTCATCTTTGACAAGACCATAATCATGTGTTGTGGCGATTACAAAACTGGAGCTA 1028 |||||||||||| |||||||||| ||||||||||||||||||| || |||||||||| Sbjct 667 GTTACTTCATCTATGACAAGACCCTAATCATGTGTTGTGGCGACCACCAAACTGGAGCCG 726 Query 1029 CTTGCATCTATATGGTGAGGGGAGATATGTTCAAGAAGATTCAGATCA-ATTCTGGGATT 1087 ||||||||||| | |||| ||||||||| |||||||||||||| || | |||| || | | Sbjct 727 CTTGCATCTATTTTGTGAAGGGAGATATATTCAAGAAGATTCAAAT-AGATTCCGGTAGT 785 Query 1088 TTTCAGTTTTCTTACTGTGTCTATCTTCCAAATTTGATCTCGGTTCCTTT 1137 ||| ||||||| ||||||||||||||||||||||| | ||||||||||| Sbjct 786 GTTCGGTTTTCTCACTGTGTCTATCTTCCAAATTTGTTATCGGTTCCTTT 835 > Ahg315690 jgi|Araly1|315690|fgenesh1_pm.C_scaffold_2000723 Length=1062 Score = 507 bits (274), Expect = 1e-142 Identities = 587/731 (80%), Gaps = 50/731 (7%) Strand=Plus/Plus Query 437 GGTTTCCGTTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGATAAGTGTTACAAGATC 496 ||||| | ||||||||||||||||||||||| | ||| |||||| ||| ||||||||||| Sbjct 350 GGTTT-CATTTTTGCGGTGTAGGATACGATAATAGTAGACCCGAAAAGGGTTACAAGATC 408 Query 497 TTGGGGTATTTTAATTGTAC-GCGTAGACTCAGCGACTCTCT-CCAGGAAGGTTA-C-TA 552 |||||||||||| ||||| | |||||| |||| ||| || | | ||| |||||| | || Sbjct 409 TTGGGGTATTTTGATTGT-CTTCGTAGAGTCAGTGACACT-TACGAGGTAGGTTACCGTA 466 Query 553 CCAAGCTGCGATCTACGAGTGTGCATCGCAGGCGTTCAAATTTATTGATACCCCTAACCC 612 | |||||| ||||| ||| | || || || || || ||||||| | | ||| Sbjct 467 --GGGTTGCGATTTACGAATGTTCGTCTCATGCATTGAAGTTTATTG--A----TGGCCC 518 Query 613 TTTCAACCTGTGGCCCAACAAGGAT-CCTTTGTCCGTGAACGGGAATCTTTATTGGCTTG 671 |||||| | |||||||| | || | ||||||||| |||| |||||||| ||||||||| Sbjct 519 TTTCAAGCAGTGGCCCATGATGG-TACCTTTGTCCTTGAATGGGAATCTCTATTGGCTTA 577 Query 672 CTCATAACCACCCTGAGACTCTTGAGTATTTCAT-CGAAACCTTTGATTTCTCCATG-GA 729 ||||| | | |||||||||| |||| ||||||| || || |||||||||||| | | || Sbjct 578 CTCAT-A--ATCCTGAGACTCATGAGCATTTCATCCG-AAGCTTTGATTTCTCGA-GTGA 632 Query 730 GATTTTCAAACCCTTTTGTCTACTGCCGTGTCGGAAGGA-CTTTGGTAGCAATGA-ACTT 787 || ||||||||||||||||| || ||||||| |||| | | || | | || | |||| Sbjct 633 AATATTCAAACCCTTTTGTCTCCTACCGTGTCAGAAGAACCGTTCTTCG-GAT-AGACTT 690 Query 788 GTCCTGGCGGTTT-TTAAGGAAGATCGGTTTTCATTGTTAAAGCAATGCTT-CGAAACA- 844 |||| ||||||| | |||| |||||||||||| |||||||||||||| || | |||| Sbjct 691 ATCCTCGCGGTTTATAAAGG-AGATCGGTTTTCGTTGTTAAAGCAATG-TTATGTAACAG 748 Query 845 ACGAAGATTGAGATTTGGGTAACAAAGATGAAGATTGATAGAGAGGAGGAAGTGGTGTGG 904 | || |||||| ||||||||||| |||| ||| |||||| | || ||||||||||||||| Sbjct 749 A-GACGATTGATATTTGGGTAACGAAGAAGAATATTGAT-G-GA-GAGGAAGTGGTGTGG 804 Query 905 ATAAAGTTTATGACATTGCCGACAACCAACTTGCCTAA-TCTAGATGAT-ACTTATTGTT 962 ||||| || ||||| || || | ||| ||||||||||| | ||| | || | | |||| Sbjct 805 ATAAACTTGATGACTTTTCCAAGAACTAACTTGCCTAAGT-TAGTTAATAAGAT-TTGTG 862 Query 963 GCAGTAGTTACTTCATCTTTGACAAGACCATAATCATGTGTTGTGGCGATTACAAAAC-T 1021 ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| | Sbjct 863 GCATTAGTTACTTCATCTTTGACAAGACCCTAATCATGTGTTGTGGCGA-CGGTCAACTT 921 Query 1022 GGAGCTACTTGCATCTATATGGTGAGGGGAGATATGTTCAAGAAGATTCAGATCA-ATTC 1080 ||||| |||||||||| || |||||||||||||||||| ||||||||| || | ||| Sbjct 922 GGAGCGGCTTGCATCTACATATTGAGGGGAGATATGTTCAGGAAGATTCATAT-AGATT- 979 Query 1081 T-GGGATTTTTCAGTTTTCTTACTGTGTC-TATCTTCCAAATTTGATCTCGGTTCCTTTT 1138 | |||||| ||| ||||||| |||||| | ||||||||||||||||||||||||||||| Sbjct 980 TAGGGATTATTCGGTTTTCTCACTGTG-CTTATCTTCCAAATTTGATCTCGGTTCCTTTA 1038 Query 1139 GAAT-CACATC 1148 |||| || ||| Sbjct 1039 GAATTCATATC 1049 Score = 316 bits (171), Expect = 2e-85 Identities = 293/350 (84%), Gaps = 15/350 (4%) Strand=Plus/Plus Query 59 GTGAAGTTGCCGTGGGATTTGGAGGAAGAGATACTGTCTCGGCTTCCACCTCGATCTCTT 118 |||||| | ||| | |||||||| ||||| || || ||||| |||||||||||||||||| Sbjct 13 GTGAAGCTACCGAGTGATTTGGAAGAAGATATTCTCTCTCGTCTTCCACCTCGATCTCTT 72 Query 119 GTTCGGTTCAGGACCGTATGTAAACACTGGAACGGTCTTTTCAGCGACAAGAGGTTTGTC 178 ||||||||| |||||||||||||| ||||||| |||||||| ||||||| |||| || Sbjct 73 ATTCGGTTCAAGACCGTATGTAAACGTTGGAACGCTCTTTTCAACGACAAGTGGTTCCTC 132 Query 179 AAAAAGCACTTGGTCCGTGCCCGTCCCCAATTCATCTTCCTTACCGAATCGAAGAAGATG 238 || || |||||||| ||||||||||| |||||||| ||| | |||||||| ||| || | Sbjct 133 AACAACCACTTGGTTCGTGCCCGTCCACAATTCATTTTCATAACCGAATCCAAG-AG-T- 189 Query 239 TACTCGATAGAGATCGATCTGGGTGGAACGATAGAGGTGCGTGAGGTA-CC-CTACGATT 296 ||||||||||| |||||||| | |||||||||||||| |||||| || || || |||| Sbjct 190 TACTCGATAGATATCGATCTCTGCGGAACGATAGAGGTACGTGAGTTAGCCGCT--GATT 247 Query 297 TTCATTGTCA-GCCTATGAAGA--AGAAT-TTTACAACTATCATGGCTTGCGATGGGTTA 352 ||| |||||| | |||| ||| | || ||| || |||||||||||||||| ||| Sbjct 248 TTCCTTGTCATG-CTAT--AGATTTG-ATGCATACCACCATCATGGCTTGCGATGAGTTC 303 Query 353 TTGTTTCGTGATTTTTGGAAACAAGGTGTTGCGGTTTGGAATCCGTGGTT 402 ||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 304 TTGTTTCGTGACTTTTGGAAGCAAGGTGTTGCGGTTTGGAATCCGTGGTT 353 > Ahg338904 jgi|Araly1|338904|fgenesh1_pg.C_scaffold_2001003 Length=966 Score = 233 bits (126), Expect = 2e-60 Identities = 410/539 (76%), Gaps = 52/539 (10%) Strand=Plus/Plus Query 642 TGTCCGTGAACGGGAATCTT-TATTGG-CTTGCTCATAACCACCCTGAGACTCTTGAGTA 699 ||||| ||||||| ||| || |||||| ||| || | || | ||||||| |||||| Sbjct 437 TGTCCTTGAACGGAAAT-TTGTATTGGACTT-CT--T-ACAATGAAGAGACTCGTGAGTA 491 Query 700 -TTTCATCGAAACCTTTGATTTCTCCATGGAGATTTTC-AAACCCTTTTGTCT-ACTGCC 756 |||| ||| || |||||||||||||| ||| | | || | | ||||||||| || || Sbjct 492 TTTTC-TCGGAAGCTTTGATTTCTCCACGGA-AATATCGATGCGCTTTTGTCTCCCT-CC 548 Query 757 GTGTCGGAAGGA--CTT-TGG-T-AGC-A-ATGAACTTGTCCTGGCGGTTTTTAAGGAAG 809 ||| ||||| | || ||| | | | | || |||||||||| | || ||||||| || Sbjct 549 TTGTGGGAAGCATGTTTCTGGCTCA-CTATATAAACTTGTCCTCACTGTATTTAAGGGAG 607 Query 810 ATCGGTTTTCATTGTTAAAGCAATGCTTCG-A-AACAACGAAGATTGAGATTTGGGTAAC 867 || ||||| ||||||||||||||| | ||| | | ||| ||| | ||| |||||||||| Sbjct 608 ATAGGTTTGCATTGTTAAAGCAAT-C-TCGTATATCAAGGAATACAGAGGTTTGGGTAAC 665 Query 868 AAA-GATGAAGATT---GATAG--A-GAGGAGGAAGTGGTGTGGATAAAGTTTATGACAT 920 ||| || ||||||| || | | |||| || ||||||||| |||| || |||||| Sbjct 666 AAAGGA-GAAGATTAACAATTGTAATAAGGATGACGTGGTGTGGTTAAACTTGATGACAC 724 Query 921 TGCCGACA-ACC-AACTTGCCTAATCTAGAT-GAT-ACTTATTGTTGCAGTAGTTACTTC 976 || | | | ||| ||||| ||| ||| | || | || || | | | ||| |||||| Sbjct 725 TGTC-A-ATACCTAACTTTCCTTCGCTA-TTCAATCAGTT-TTCTGGTATTAGATACTTC 780 Query 977 ATCTT-TGACAAGACCATAATCATGTGTTGTGGCGATTA-CAAAACTGGAGCT-ACTTGC 1033 || || |||||||||| | |||||||||||||||| | | |||| |||| | ||||| Sbjct 781 AT-TTATGACAAGACCCTTATCATGTGTTGTGGCGCCGATC-AAACCGGAG-TGGCTTGC 837 Query 1034 ATCTATATGGTGAGGGGAGATATGTTCAAGAAGATTCAGATCA-ATTCTGGGATTT-TTC 1091 |||| ||| | ||||||||| |||| |||||||||||| || | |||| || ||| || Sbjct 838 ATCTTTATTGCGAGGGGAGACATGTGCAAGAAGATTCAAAT-AGGTTCT-GGCTTTGATC 895 Query 1092 AGTTTTCTTACTGTGTCTATCTTCCAAATTTGATCTCGGTTCCTTTTGAAT-CACATCA 1149 | |||||| |||||||||||||||||||||||||||||||||||| ||||| || |||| Sbjct 896 ATTTTTCTCACTGTGTCTATCTTCCAAATTTGATCTCGGTTCCTTCTGAATTCAAATCA 954 Score = 202 bits (109), Expect = 5e-51 Identities = 164/189 (87%), Gaps = 10/189 (5%) Strand=Plus/Plus Query 50 ATGGCGTCGGTGAAG-TTGCCGTGGGATTTGGAGGAAGAGATACTGTCTCGGCTTCCACC 108 |||||||||| |||| || ||| |||| |||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGTCGGGGAAGCTT-CCGCGGGAGTTGGAGGAAGAGATACTGTCTCGGCTTCCACC 59 Query 109 TCGATCTCTTGTTCGGTTCAGGACC-GTATGTAAACACTGGAA-CGGTCTTTTCAGCGAC 166 ||||||||||||||||||||| | | ||||||||||||||||| | |||||||| |||| Sbjct 60 TCGATCTCTTGTTCGGTTCAG-ATCTGTATGTAAACACTGGAAACA-TCTTTTCAACGAC 117 Query 167 AAGAGGTTTGTCAAAAAGCA-CTTGG-TCCGTGCCCGTCCCCAATTCATCTTCCTTACCG 224 || ||||| |||| || || ||| | || |||||||||||||||||||| |||| ||| Sbjct 118 AAAAGGTTCATCAACAA-CAGCTTAGCTC-GTGCCCGTCCCCAATTCATCATCCTGACCA 175 Query 225 AATCGAAGA 233 |||| |||| Sbjct 176 AATCCAAGA 184 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45976237902 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5