BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17710.1
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929631 jgi|Araly1|929631|scaffold_302088.1 981 0.0
Ahg925882 jgi|Araly1|925882|scaffold_201443.1 743 0.0
Ahg315690 jgi|Araly1|315690|fgenesh1_pm.C_scaffold_2000723 507 1e-142
Ahg338904 jgi|Araly1|338904|fgenesh1_pg.C_scaffold_2001003 233 2e-60
> Ahg929631 jgi|Araly1|929631|scaffold_302088.1
Length=823
Score = 981 bits (531), Expect = 0.0
Identities = 690/763 (90%), Gaps = 25/763 (3%)
Strand=Plus/Plus
Query 30 TTTGTAAAACAGAGCACCTGATGGCGTCGGTGAAG-TTGCCGTGGGATTTGGAGGAAGAG 88
||||||||||||| ||||| |||||||||| |||| || |||||||||||||||||||||
Sbjct 1 TTTGTAAAACAGAACACCTAATGGCGTCGGGGAAGCTT-CCGTGGGATTTGGAGGAAGAG 59
Query 89 ATACTGTCTCGGCTTCCACCTCGATCTCTTGTTCGGTTCAGGA-CCGTATGTAAACACTG 147
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 60 ATACTGTGTCGGCTTCCACCTCGATCTCTTGTTCGGTTCA-GATCCGTATGTAAACACTG 118
Query 148 GAACGGTCTTTTC-AGCGACAAGAGGTTTGTCAAAAAGCACTTG-GTCCGTGCCCGTCCC 205
||||| ||||||| | ||| ||||| |||||||||||||||||| || ||| ||||| ||
Sbjct 119 GAACGATCTTTTCTA-CGATAAGAGCTTTGTCAAAAAGCACTTGAGT-CGTACCCGTACC 176
Query 206 CAATTCATCTTCCTTACCGAATCGAAGAAGATGTACTCGATAGAGATCGATCTGGGTGGA 265
|||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 177 CAATTCATCTTCCTGACCGAATCGAAGAAGATGTACTCGATAGACATCGATATGGGCGGA 236
Query 266 ACGATAGAGGTGCGTGAGGTACCCTACGATTTTCATTGTCAGCCTATGAAGAAGAATTTT 325
|||||||||||||||||| || |||| ||||||||||||||||||||||||| ||| |||
Sbjct 237 ACGATAGAGGTGCGTGAGCTATCCTATGATTTTCATTGTCAGCCTATGAAGACGAAATTT 296
Query 326 ACAACTATCATGGCTTGCGATGGGTTATTGTTTCGTGATTTTTGGAAACAAGGTGTTGCG 385
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 ACAACTATCATGGCTTGCGATGGGTTATTGTTTCGTGAAATTTGGAAACAAGGTGTTGCG 356
Query 386 GTTTGGAATCCGTGGTTGAGACAGGTTGGGTGGATCGAGTATGAGGATAAAGGTTTCCGT 445
||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 357 GTTTGGAATTCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTCCAT 416
Query 446 -TTTTGCGGTGTAGGATACGATAGTTGTAAACCCGATAAGTGTTACAAGATCTTGGGGTA 504
|||| |||||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct 417 ATTTT-TGGTGTAGGATACGATAGTTGTAGACCCGAAAAGGGTTACAAGATCTTGGGGTA 475
Query 505 TTTTAATTGTA-CGCGTAGACTCAGCGACTCTCTCCAGGAAGGTTACT-ACCAAGCTGCG 562
| ||||||||| | |||||| |||||||||||||||||| |||||| | || ||| ||||
Sbjct 476 TATTAATTGTATC-CGTAGAGTCAGCGACTCTCTCCAGGTAGGTTA-TGACAAAGTTGCG 533
Query 563 ATCTACGAGTGTGCATCGCAGGCGTTCAAATTTATTGATACCCCTAACCCTTTCAACCTG 622
|||||||||||||| || |||||||| || |||||||||| | |||||||||||
Sbjct 534 ATCTACGAGTGTGCTTCTCAGGCGTTGAAGTTTATTGATA---C---CCCTTTCAACCAC 587
Query 623 TGGCCCAACAAGGATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTGCTCATAACCAC 682
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 588 TGGCCCACCAAGGATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTGCTCATAATCGC 647
Query 683 CCTGAGACTCTTGAGTATTTCATCGAAACCTTTGATTTCTCCATGGAGATTTTCAAACCC 742
||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 648 ---GAGACTCTTGAGTATTTCATCCAAACCTTTGATTTCTCGATGGAGATATTCAAACCC 704
Query 743 TTTTGTCTACTGCCGTGTCGGAAGGACT-TTGGTAGCAATGAA 784
|||||||| |||||||||| || ||||| ||| ||||||||||
Sbjct 705 TTTTGTCTCCTGCCGTGTCAGATGGACTATTG-TAGCAATGAA 746
> Ahg925882 jgi|Araly1|925882|scaffold_201443.1
Length=859
Score = 743 bits (402), Expect = 0.0
Identities = 695/830 (84%), Gaps = 46/830 (6%)
Strand=Plus/Plus
Query 325 TACAACTATCATGGCTTGCGATGGGTTATTGTTTCGTGATTTTTGGAAACAAGGTGTTGC 384
||| || |||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 35 TACCACCATCACCGCTTGCGATGGGTTATTGTTTCGTGACTTTTGGAAGCAAGGTGTTGC 94
Query 385 GGTTTGGAATCCGTGGTTGAGACAGGTTGGGTGGATCGAGTATGAGGATAAAGGTTTCCG 444
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 95 GGTTTGGAATCCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTTCA 154
Query 445 TTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGATAAGTGTTACAAGATCTTGGGGTA 504
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 155 TTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGAAAAGAGTTACAAGATCTTGGGGTA 214
Query 505 TTTTAATTGTACGC-GTAGACTCAGCGACTCTCT-CCAGG-AAGGTTACTACCA-AGCTG 560
|||||||||| | | ||| | |||||||| || | ||| | ||| |||| | | || ||
Sbjct 215 TTTTAATTGT-CTCCGTAAAGTCAGCGACACT-TACCATGTAAG-TTACCGC-AGAGTTG 270
Query 561 CGATCTACGAGTGTGCATCGCAGGCGTTCAAATTTATTGATACCCCTAACCCTTTCAAC- 619
|||| ||||||||| | || || ||||| || || |||||| ||||| || || |
Sbjct 271 CGATTTACGAGTGTTCGTCTCATGCGTTGAAGTTCATTGATGCCCCT-----TT-CA-CG 323
Query 620 CTGTGGCCCAACAAGG-ATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTGCTCATAA 678
| |||||||| || || | ||||||||| ||||||||||||| ||||||||| ||||| |
Sbjct 324 CAGTGGCCCATCATGGCA-CCTTTGTCCTTGAACGGGAATCTCTATTGGCTTACTCATGA 382
Query 679 CCACCCTGAGACTCT-TGAGTATTTCATC-GAAACCTTTGATTTCTCCATGGAGATTTTC 736
||| ||||||| | | ||||||||||| ||| | ||||||||||||| |||||| |||
Sbjct 383 --ACC-TGAGACT-TATAAGTATTTCATCCGAAGC-TTTGATTTCTCCAAGGAGATATTC 437
Query 737 AAACCCTTTTGTCTACTGCCGTGTCGGAAGGAC--TT-TGGTAGCAATGAACTTGTCCTG 793
||||| |||||||| ||||| |||| ||| || || | | || | ||||||||||||
Sbjct 438 AAACCTTTTTGTCTCCTGCCCTGTCTAAAGAACCGTTCTCG-AG-A-TGAACTTGTCCTC 494
Query 794 GCGGTTTTTAAG-GAAGATCGGTTTTCATTGTTAAAGCAATGCT--TCGAAACAACGAAG 850
||||||||||| || ||||||||||| |||||||||||||| | | | |||| ||||
Sbjct 495 GCGGTTTTTAAAAGA-GATCGGTTTTCGTTGTTAAAGCAATG-TAAT-GTAACAGGGAAG 551
Query 851 ATTGAGATTTGGGTAACAAAGATGAAGATTGATAGAGAGGAGGAAGTGGTGTGGATAAAG 910
||||| ||||||||||| |||| |||||||||| | ||| ||||||| |||||||||||
Sbjct 552 ATTGATATTTGGGTAACGAAGAAGAAGATTGAT-G-GAG-AGGAAGTAGTGTGGATAAAC 608
Query 911 TTTATGACATTGCCGACAACCAACTTGCCTAA-TCTAGATGATAC-TTATTGTTGCAGTA 968
|| ||||| ||||| ||||| |||||| |||| | | | | ||| || |||| ||| ||
Sbjct 609 TTGATGACTTTGCCAACAACTAACTTGTCTAAGT-TGGTTAATAAGTT-TTGTGGCATTA 666
Query 969 GTTACTTCATCTTTGACAAGACCATAATCATGTGTTGTGGCGATTACAAAACTGGAGCTA 1028
|||||||||||| |||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 667 GTTACTTCATCTATGACAAGACCCTAATCATGTGTTGTGGCGACCACCAAACTGGAGCCG 726
Query 1029 CTTGCATCTATATGGTGAGGGGAGATATGTTCAAGAAGATTCAGATCA-ATTCTGGGATT 1087
||||||||||| | |||| ||||||||| |||||||||||||| || | |||| || | |
Sbjct 727 CTTGCATCTATTTTGTGAAGGGAGATATATTCAAGAAGATTCAAAT-AGATTCCGGTAGT 785
Query 1088 TTTCAGTTTTCTTACTGTGTCTATCTTCCAAATTTGATCTCGGTTCCTTT 1137
||| ||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 786 GTTCGGTTTTCTCACTGTGTCTATCTTCCAAATTTGTTATCGGTTCCTTT 835
> Ahg315690 jgi|Araly1|315690|fgenesh1_pm.C_scaffold_2000723
Length=1062
Score = 507 bits (274), Expect = 1e-142
Identities = 587/731 (80%), Gaps = 50/731 (7%)
Strand=Plus/Plus
Query 437 GGTTTCCGTTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGATAAGTGTTACAAGATC 496
||||| | ||||||||||||||||||||||| | ||| |||||| ||| |||||||||||
Sbjct 350 GGTTT-CATTTTTGCGGTGTAGGATACGATAATAGTAGACCCGAAAAGGGTTACAAGATC 408
Query 497 TTGGGGTATTTTAATTGTAC-GCGTAGACTCAGCGACTCTCT-CCAGGAAGGTTA-C-TA 552
|||||||||||| ||||| | |||||| |||| ||| || | | ||| |||||| | ||
Sbjct 409 TTGGGGTATTTTGATTGT-CTTCGTAGAGTCAGTGACACT-TACGAGGTAGGTTACCGTA 466
Query 553 CCAAGCTGCGATCTACGAGTGTGCATCGCAGGCGTTCAAATTTATTGATACCCCTAACCC 612
| |||||| ||||| ||| | || || || || || ||||||| | | |||
Sbjct 467 --GGGTTGCGATTTACGAATGTTCGTCTCATGCATTGAAGTTTATTG--A----TGGCCC 518
Query 613 TTTCAACCTGTGGCCCAACAAGGAT-CCTTTGTCCGTGAACGGGAATCTTTATTGGCTTG 671
|||||| | |||||||| | || | ||||||||| |||| |||||||| |||||||||
Sbjct 519 TTTCAAGCAGTGGCCCATGATGG-TACCTTTGTCCTTGAATGGGAATCTCTATTGGCTTA 577
Query 672 CTCATAACCACCCTGAGACTCTTGAGTATTTCAT-CGAAACCTTTGATTTCTCCATG-GA 729
||||| | | |||||||||| |||| ||||||| || || |||||||||||| | | ||
Sbjct 578 CTCAT-A--ATCCTGAGACTCATGAGCATTTCATCCG-AAGCTTTGATTTCTCGA-GTGA 632
Query 730 GATTTTCAAACCCTTTTGTCTACTGCCGTGTCGGAAGGA-CTTTGGTAGCAATGA-ACTT 787
|| ||||||||||||||||| || ||||||| |||| | | || | | || | ||||
Sbjct 633 AATATTCAAACCCTTTTGTCTCCTACCGTGTCAGAAGAACCGTTCTTCG-GAT-AGACTT 690
Query 788 GTCCTGGCGGTTT-TTAAGGAAGATCGGTTTTCATTGTTAAAGCAATGCTT-CGAAACA- 844
|||| ||||||| | |||| |||||||||||| |||||||||||||| || | ||||
Sbjct 691 ATCCTCGCGGTTTATAAAGG-AGATCGGTTTTCGTTGTTAAAGCAATG-TTATGTAACAG 748
Query 845 ACGAAGATTGAGATTTGGGTAACAAAGATGAAGATTGATAGAGAGGAGGAAGTGGTGTGG 904
| || |||||| ||||||||||| |||| ||| |||||| | || |||||||||||||||
Sbjct 749 A-GACGATTGATATTTGGGTAACGAAGAAGAATATTGAT-G-GA-GAGGAAGTGGTGTGG 804
Query 905 ATAAAGTTTATGACATTGCCGACAACCAACTTGCCTAA-TCTAGATGAT-ACTTATTGTT 962
||||| || ||||| || || | ||| ||||||||||| | ||| | || | | ||||
Sbjct 805 ATAAACTTGATGACTTTTCCAAGAACTAACTTGCCTAAGT-TAGTTAATAAGAT-TTGTG 862
Query 963 GCAGTAGTTACTTCATCTTTGACAAGACCATAATCATGTGTTGTGGCGATTACAAAAC-T 1021
||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 863 GCATTAGTTACTTCATCTTTGACAAGACCCTAATCATGTGTTGTGGCGA-CGGTCAACTT 921
Query 1022 GGAGCTACTTGCATCTATATGGTGAGGGGAGATATGTTCAAGAAGATTCAGATCA-ATTC 1080
||||| |||||||||| || |||||||||||||||||| ||||||||| || | |||
Sbjct 922 GGAGCGGCTTGCATCTACATATTGAGGGGAGATATGTTCAGGAAGATTCATAT-AGATT- 979
Query 1081 T-GGGATTTTTCAGTTTTCTTACTGTGTC-TATCTTCCAAATTTGATCTCGGTTCCTTTT 1138
| |||||| ||| ||||||| |||||| | |||||||||||||||||||||||||||||
Sbjct 980 TAGGGATTATTCGGTTTTCTCACTGTG-CTTATCTTCCAAATTTGATCTCGGTTCCTTTA 1038
Query 1139 GAAT-CACATC 1148
|||| || |||
Sbjct 1039 GAATTCATATC 1049
Score = 316 bits (171), Expect = 2e-85
Identities = 293/350 (84%), Gaps = 15/350 (4%)
Strand=Plus/Plus
Query 59 GTGAAGTTGCCGTGGGATTTGGAGGAAGAGATACTGTCTCGGCTTCCACCTCGATCTCTT 118
|||||| | ||| | |||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct 13 GTGAAGCTACCGAGTGATTTGGAAGAAGATATTCTCTCTCGTCTTCCACCTCGATCTCTT 72
Query 119 GTTCGGTTCAGGACCGTATGTAAACACTGGAACGGTCTTTTCAGCGACAAGAGGTTTGTC 178
||||||||| |||||||||||||| ||||||| |||||||| ||||||| |||| ||
Sbjct 73 ATTCGGTTCAAGACCGTATGTAAACGTTGGAACGCTCTTTTCAACGACAAGTGGTTCCTC 132
Query 179 AAAAAGCACTTGGTCCGTGCCCGTCCCCAATTCATCTTCCTTACCGAATCGAAGAAGATG 238
|| || |||||||| ||||||||||| |||||||| ||| | |||||||| ||| || |
Sbjct 133 AACAACCACTTGGTTCGTGCCCGTCCACAATTCATTTTCATAACCGAATCCAAG-AG-T- 189
Query 239 TACTCGATAGAGATCGATCTGGGTGGAACGATAGAGGTGCGTGAGGTA-CC-CTACGATT 296
||||||||||| |||||||| | |||||||||||||| |||||| || || || ||||
Sbjct 190 TACTCGATAGATATCGATCTCTGCGGAACGATAGAGGTACGTGAGTTAGCCGCT--GATT 247
Query 297 TTCATTGTCA-GCCTATGAAGA--AGAAT-TTTACAACTATCATGGCTTGCGATGGGTTA 352
||| |||||| | |||| ||| | || ||| || |||||||||||||||| |||
Sbjct 248 TTCCTTGTCATG-CTAT--AGATTTG-ATGCATACCACCATCATGGCTTGCGATGAGTTC 303
Query 353 TTGTTTCGTGATTTTTGGAAACAAGGTGTTGCGGTTTGGAATCCGTGGTT 402
||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 304 TTGTTTCGTGACTTTTGGAAGCAAGGTGTTGCGGTTTGGAATCCGTGGTT 353
> Ahg338904 jgi|Araly1|338904|fgenesh1_pg.C_scaffold_2001003
Length=966
Score = 233 bits (126), Expect = 2e-60
Identities = 410/539 (76%), Gaps = 52/539 (10%)
Strand=Plus/Plus
Query 642 TGTCCGTGAACGGGAATCTT-TATTGG-CTTGCTCATAACCACCCTGAGACTCTTGAGTA 699
||||| ||||||| ||| || |||||| ||| || | || | ||||||| ||||||
Sbjct 437 TGTCCTTGAACGGAAAT-TTGTATTGGACTT-CT--T-ACAATGAAGAGACTCGTGAGTA 491
Query 700 -TTTCATCGAAACCTTTGATTTCTCCATGGAGATTTTC-AAACCCTTTTGTCT-ACTGCC 756
|||| ||| || |||||||||||||| ||| | | || | | ||||||||| || ||
Sbjct 492 TTTTC-TCGGAAGCTTTGATTTCTCCACGGA-AATATCGATGCGCTTTTGTCTCCCT-CC 548
Query 757 GTGTCGGAAGGA--CTT-TGG-T-AGC-A-ATGAACTTGTCCTGGCGGTTTTTAAGGAAG 809
||| ||||| | || ||| | | | | || |||||||||| | || ||||||| ||
Sbjct 549 TTGTGGGAAGCATGTTTCTGGCTCA-CTATATAAACTTGTCCTCACTGTATTTAAGGGAG 607
Query 810 ATCGGTTTTCATTGTTAAAGCAATGCTTCG-A-AACAACGAAGATTGAGATTTGGGTAAC 867
|| ||||| ||||||||||||||| | ||| | | ||| ||| | ||| ||||||||||
Sbjct 608 ATAGGTTTGCATTGTTAAAGCAAT-C-TCGTATATCAAGGAATACAGAGGTTTGGGTAAC 665
Query 868 AAA-GATGAAGATT---GATAG--A-GAGGAGGAAGTGGTGTGGATAAAGTTTATGACAT 920
||| || ||||||| || | | |||| || ||||||||| |||| || ||||||
Sbjct 666 AAAGGA-GAAGATTAACAATTGTAATAAGGATGACGTGGTGTGGTTAAACTTGATGACAC 724
Query 921 TGCCGACA-ACC-AACTTGCCTAATCTAGAT-GAT-ACTTATTGTTGCAGTAGTTACTTC 976
|| | | | ||| ||||| ||| ||| | || | || || | | | ||| ||||||
Sbjct 725 TGTC-A-ATACCTAACTTTCCTTCGCTA-TTCAATCAGTT-TTCTGGTATTAGATACTTC 780
Query 977 ATCTT-TGACAAGACCATAATCATGTGTTGTGGCGATTA-CAAAACTGGAGCT-ACTTGC 1033
|| || |||||||||| | |||||||||||||||| | | |||| |||| | |||||
Sbjct 781 AT-TTATGACAAGACCCTTATCATGTGTTGTGGCGCCGATC-AAACCGGAG-TGGCTTGC 837
Query 1034 ATCTATATGGTGAGGGGAGATATGTTCAAGAAGATTCAGATCA-ATTCTGGGATTT-TTC 1091
|||| ||| | ||||||||| |||| |||||||||||| || | |||| || ||| ||
Sbjct 838 ATCTTTATTGCGAGGGGAGACATGTGCAAGAAGATTCAAAT-AGGTTCT-GGCTTTGATC 895
Query 1092 AGTTTTCTTACTGTGTCTATCTTCCAAATTTGATCTCGGTTCCTTTTGAAT-CACATCA 1149
| |||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 896 ATTTTTCTCACTGTGTCTATCTTCCAAATTTGATCTCGGTTCCTTCTGAATTCAAATCA 954
Score = 202 bits (109), Expect = 5e-51
Identities = 164/189 (87%), Gaps = 10/189 (5%)
Strand=Plus/Plus
Query 50 ATGGCGTCGGTGAAG-TTGCCGTGGGATTTGGAGGAAGAGATACTGTCTCGGCTTCCACC 108
|||||||||| |||| || ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGGGGAAGCTT-CCGCGGGAGTTGGAGGAAGAGATACTGTCTCGGCTTCCACC 59
Query 109 TCGATCTCTTGTTCGGTTCAGGACC-GTATGTAAACACTGGAA-CGGTCTTTTCAGCGAC 166
||||||||||||||||||||| | | ||||||||||||||||| | |||||||| ||||
Sbjct 60 TCGATCTCTTGTTCGGTTCAG-ATCTGTATGTAAACACTGGAAACA-TCTTTTCAACGAC 117
Query 167 AAGAGGTTTGTCAAAAAGCA-CTTGG-TCCGTGCCCGTCCCCAATTCATCTTCCTTACCG 224
|| ||||| |||| || || ||| | || |||||||||||||||||||| |||| |||
Sbjct 118 AAAAGGTTCATCAACAA-CAGCTTAGCTC-GTGCCCGTCCCCAATTCATCATCCTGACCA 175
Query 225 AATCGAAGA 233
|||| ||||
Sbjct 176 AATCCAAGA 184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5