BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17730.1

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg904738 jgi|Araly1|904738|Al_scaffold_0003_1866                   1264    0.0  


> Ahg904738 jgi|Araly1|904738|Al_scaffold_0003_1866
Length=741

 Score = 1264 bits (684),  Expect = 0.0
 Identities = 722/741 (97%), Gaps = 0/741 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTCCAGTCGGATTACCTCCAGGCTTTAGATTTCATCCGACTGACGAAGAACTCGTA  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTCCAGTAGGATTACCTCCAGGCTTTAGATTTCATCCGACTGACGAAGAACTCGTA  60

Query  61   AACTATTATCTGAAAAGAAAGATCAACGGTCAAGAAATCGAGCTTGATATAATTCCCGAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  61   AACTATTATCTGAAAAGAAAGATCAACGGTCAAGAAATCGAGCTTGATATAATCCCCGAG  120

Query  121  GTTGATCTCTACAAATGCGAGCCATGGGACCTCGCAGAGAAGTCGTTTCTACCAAGTAGA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTTGATCTCTACAAATGCGAGCCATGGGACCTCGCAGAGAAGTCGTTTCTACCAAGTAGA  180

Query  181  GATCCGGAGTGGTAtttttttGGGCCACGTGACCGGAAGTATCCGAACGGGTTTAGGACG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GATCCGGAGTGGTATTTTTTTGGGCCACGTGACCGGAAGTATCCGAACGGGTTTAGGACG  240

Query  241  AACCGAGCAACGAGAGGTGGGTACTGGAAATCGACCGGCAAAGATCGGAGAGTGACAAGT  300
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct  241  AACCGAGCAACGAGAGGTGGATACTGGAAATCGACTGGCAAAGATCGGAGAGTGACAAGT  300

Query  301  CAAAGCAGAGCGATTGGGATGAAAAAGACTTTGGTTTATTATAAAGGAAGAGCTCCTCAA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CAAAGCAGAGCGATTGGGATGAAAAAGACTTTGGTTTATTATAAAGGAAGAGCTCCTCAA  360

Query  361  GGGATCCGTACGGATTGGGTTATGCATGAGTATCGTCTCGATGATAAGGATTGTGACGAT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GGGATCCGTACGGATTGGGTTATGCATGAGTATCGTCTCGATGATAAGGATTGTGACGAT  420

Query  421  CCCTCTTCGCTCCAGGACTCGTATGCATTGTGTCGGGTATTCAAAAAGAACGGAATATGT  480
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  421  CCCTCTTCGCTCCAGGACTCGTATGCATTGTGTCGGGTATTCAAGAAGAACGGAATATGT  480

Query  481  TCGGAGTTGGAATCAGAACGGCAATTGCAAACGGGACAATGTAGCTTCACAACGGCGTCA  540
            || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  481  TCAGAGTTGGAATCAGAACGGCAATTACAAACGGGACAATGTAGCTTCACGACGGCGTCA  540

Query  541  ATGGAGGAGATCAATTCGAATAACAACAACAATTATAATAATGATTATGAGACAATGTCG  600
            ||||||||||||||||||||||| ||||| || || ||||| || || ||||||||||||
Sbjct  541  ATGGAGGAGATCAATTCGAATAATAACAATAACTACAATAACGAATACGAGACAATGTCG  600

Query  601  CCGGAGGTGGGAGTTTCCTCCGCCTGCGTTGAAGAAGTAGTCGATGATAAAGACGATTCG  660
            ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  601  CCGGAAGTGGGAATTTCTTCCGCCTGCGTTGAAGAAGTAGTCGATGATAAAGACGATTCG  660

Query  661  TGGATGCAGTTTATAACAGATGACGCATGGGACACGTCATCAAATGGTGCAGCTATGGGA  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  TGGATGCAGTTTATAACAGATGACGCATGGGACACGTCATCAAATGGTGCAGCTATGGGA  720

Query  721  CATGGTCAAGGGGTTTATTGA  741
            ||||||||||| |||||||||
Sbjct  721  CATGGTCAAGGTGTTTATTGA  741



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27296008572


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5