BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17780.1

Length=736
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479261 jgi|Araly1|479261|fgenesh2_kg.3__1962__AT3G17780.1         771    0.0  


> Ahg479261 jgi|Araly1|479261|fgenesh2_kg.3__1962__AT3G17780.1
Length=526

 Score =  771 bits (417),  Expect = 0.0
 Identities = 465/488 (95%), Gaps = 3/488 (1%)
 Strand=Plus/Plus

Query  96   GGGGAATAATGGCATTGCAATGGCTGATTCTGTCGTATGTGGTTGCCGCCGAGGTAGCGA  155
            |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct  1    GGGGAACAATGGCATTGCAATGGCTTATTCTGTCGTATGTGGTCGCCGCCGAGGTCGCGA  60

Query  156  TCGCCGTCATCTTGACTCTCCCTTACCCAATGCTCCTGAAGAAACGCATCGTATCACTTA  215
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct  61   TCGCCGTCATCTTGACTCTCCCTTACCCAATGCTCCTGAAGAAACGCATTGTATCACTTG  120

Query  216  TCTCGCTCATACTCAATCCTGCCGCTTCCATCGTCGCCTTCGCTGGATTTCAACTCCTCG  275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCTCGCTCATACTCAATCCTGCCGCTTCCATCGTCGCCTTCGCTGGATTTCAACTCCTCG  180

Query  276  ATATTTACTGGAAGAATGAGCATAGGCTATTGTGCTCATCTGAAGTTTGCACTACTACAG  335
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  181  ATATTTACTGGAAGAATGAGCATAGGCTACTGTGCTCATCTGAAGTTTGCACTACTACAG  240

Query  336  AGCGGGATCGTCACGAGAAATCCGTCTATAAGGCTCAGAGGAATGGGGTTCTGTGTGCGG  395
            ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  241  AGCGGGATCGTTACGAGAAATCCATCTATAAGGCTCAGAGGAATGGGGTTCTGTGTGCGG  300

Query  396  CTGGGATCCTTCTCTACTGGTGCATCTTCCGCATCTGCAAGTACCACAAAGACCTTGAGC  455
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CTGGGATCCTGCTCTACTGGTGCATCTTCCGCATCTGCAAGTACCACAAAGACCTTGAGC  360

Query  456  GTTTGGAGCAATTAGAGAAGAGATACAAGGACGAGTAGAAATCTTCCCAA--CTGAGAGT  513
            |||||||| ||||||||||||||||||| ||||||||||| |||||||||  ||||||||
Sbjct  361  GTTTGGAGGAATTAGAGAAGAGATACAAAGACGAGTAGAAGTCTTCCCAAGTCTGAGAGT  420

Query  514  CTGGTACTACTGTTATAGTATCAC-TCGGCGTGTGAGTAGTCCCAAAAACTGAATGAGAG  572
            || || || || |||||||||||| ||||| ||||| |||||||||||||||||||||| 
Sbjct  421  CTTGTTCTTCTCTTATAGTATCACCTCGGCTTGTGACTAGTCCCAAAAACTGAATGAGAC  480

Query  573  CATGATTT  580
            ||||||||
Sbjct  481  CATGATTT  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27105393987


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5