BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17790.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904746 jgi|Araly1|904746|Al_scaffold_0003_1874 1615 0.0
> Ahg904746 jgi|Araly1|904746|Al_scaffold_0003_1874
Length=1014
Score = 1615 bits (874), Expect = 0.0
Identities = 965/1009 (96%), Gaps = 6/1009 (1%)
Strand=Plus/Plus
Query 186 TCGTCGATCGTTAATGTCCGCCACGGCGAGTCTGAGTTTGCTGTTGTGTATCTTCACCAC 245
|||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||
Sbjct 9 TCGTCGATCGTTAATGTCCGCCACGGCGAGTCTGTGTTTGCTATTGTCTATCTTCACCAC 68
Query 246 CTTCGTCGTGGTGTCGAACGGTGAGCTTCAGAGATTTATAGAGCCGGCTAAAAGCGACGG 305
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 69 CTTCGTCGTGGTGTCTAACGGTGAGCTTCAGAGATTTATAGAGCCGGCGAAAAGTGACGG 128
Query 306 TTCCGTTAGTTTTATAGTCATCGGAGATTGGGGTCGTCGTGGCTCCTTCAATCAGTCTCT 365
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 129 TTCCGTTAGTTTTATAGTCATCGGAGATTGGGGTCGCCGTGGCTCCTTCAATCAGTCTAT 188
Query 366 CGTTGCTTATCAGATGGGAAAAATTGGAGAGAAGATTGACTTAGATTTCGTGGTGTCTAC 425
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 189 CGTTGCTTATCAGATGGGAAAAATTGGAGAGAAGATAGATTTAGATTTCGTGGTGTCTAC 248
Query 426 GGGAGATAACTTCTACGACAATGGATTGTTTAGTGAACATGATCCAAACTTCGAACAATC 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GGGAGATAACTTCTACGACAATGGATTGTTTAGTGAACATGATCCAAACTTCGAACAATC 308
Query 486 TTTCTCTAACATCTACACTGCTCCAAGTCTTCAGAAACAGTGGTACAGTGTTTTGGGAAA 545
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTTCTCTAATATCTACACTGCTCCAAGTCTTCAGAAACAGTGGTACAGTGTTTTGGGAAA 368
Query 546 CCATGACTATAGAGGTGACGCAGAAGCTCAGCTGAGTTCTGTTCTCCGGGAAATCGACAG 605
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 369 CCATGACTATAGAGGTGACGCAGAAGCTCAGCTAAGCTCTGTTCTCCGGGAAATCGATAG 428
Query 606 CCGTTGGATTTGTCTTCGATCATTTGTCGTTGATGCAGAGTTGGTAGAGATGTTCTTTGT 665
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 429 CCGTTGGATTTGTCTTCGATCATTTGTCGTTGATGCAGAGTTAGTCGAGATGTTCTTTGT 488
Query 666 TGACACGACTCC-TTTCGTGAAAGAATACTACACAGAAGCAGATGGTCACTCATATGATT 724
|||||||||||| ||| || |||||||||||||||||||||||||||||| |||| ||||
Sbjct 489 TGACACGACTCCATTT-GTCAAAGAATACTACACAGAAGCAGATGGTCACACATACGATT 547
Query 725 GGCGCGCAGTTCCATCTCGCAACTCTTATGTCAAAG-CTCTTCTCCGTGATCTTGAAGTT 783
|||||||||||||||||||||||||||||||||| | | || ||| ||||||||||||||
Sbjct 548 GGCGCGCAGTTCCATCTCGCAACTCTTATGTCAA-GTCCCTCCTCGGTGATCTTGAAGTT 606
Query 784 TCCTTAAAGAGTTCTAAAGCAAGATGGAAGATTGTTGTTGGTCACCATGCAATGAGAAGC 843
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TCCTTAAAGAGTTCCAAAGCAAGATGGAAGATTGTTGTTGGTCACCATGCAATGAGAAGC 666
Query 844 ATTGGACATCATGGAGATACTAAAGAGCTCAACGAAGAGCTTCTTCCGATTCTTAAAGAG 903
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 667 ATTGGACACCATGGAGATACTAAGGAGCTCAACGAAGAGCTTCTTCCAATTCTCAAAGAG 726
Query 904 AACGGTGTTGATCTCTACATGAATGGACATGATCATTGTCTTCAACATATGAGTGATGAA 963
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 727 AACGGTGTTGATCTCTATATGAATGGACACGATCATTGTCTTCAGCATATGAGTGATGAA 786
Query 964 GACAGTCCTATTCAGTTTCTAACTAGTGGTGCTGGATCCAAGGCTTGGAGAGGAGATATT 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GACAGTCCTATTCAGTTTCTAACTAGTGGTGCTGGATCCAAGGCTTGGAGAGGAGATATA 846
Query 1024 AACCCAGTGACCATCAATCCCAAG-CTACTGAAATTCTATTATGATGGTCAAGGATTCAT 1082
|||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||
Sbjct 847 AACCCAGTGACCATCAATCCCAAGTCT-CTGAAATTTTATTACGATGGTCAAGGATTCAT 905
Query 1083 GTCTGCTCGGTTCACTCACTCGGACGCAGAGATCGTCTTCTACGATGTCTTTGGTGAGAT 1142
||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 906 GTCCGCTCGGTTCACTCACTCAGATGCAGAGATCGTCTTCTACGATGTCTTTGGTGAGGT 965
Query 1143 TTTGCACAAATGGGTCACTTCTAAACAACTTCTTCATTCCTCTGTTTGA 1191
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 966 TTTGCACAAATGGGTTACTTCTAAACAACTTCTTCATTCCTCTGTTTGA 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5