BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17800.2
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904747 jgi|Araly1|904747|Al_scaffold_0003_1875 1991 0.0
> Ahg904747 jgi|Araly1|904747|Al_scaffold_0003_1875
Length=1281
Score = 1991 bits (1078), Expect = 0.0
Identities = 1218/1286 (95%), Gaps = 7/1286 (1%)
Strand=Plus/Plus
Query 279 ATGGATGCCTTGACCTCGAGTTTGGTTCGATCTCCCATCGTACCATCGAGAACTTCCGAC 338
||||||||| |||| |||||||||||||||||||| || ||||| | ||||||||||||
Sbjct 1 ATGGATGCCGTGACGGCGAGTTTGGTTCGATCTCCCGTCTTACCACCTAGAACTTCCGAC 60
Query 339 AACGGTTCTGGATCTATGTTCCTTACCGCCAGTGGCCCTGGATTCACGCGTTCTGGTTCT 398
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AACGGTTCTGGATCTATGTTCCTTACCGCCAGTGGCCCTGGATTCACTCGTTCTGGTTCT 120
Query 399 TCAAGACTTCAACTTCGTTTAAGGGTATGTCCCAAATCTCTTCAAAACGCGTCTGCTAGA 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAAGACTTCAACTTCGTTTAAGGGTATGTCCCAAATCTCTTCAAAACGCGTCTGCTAGA 180
Query 459 TCCTCAAGATCATTACAGAGCTTAACAACGACTGCTAAAACTCGGAGAAGTTTTGTGGTT 518
|||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 TCCTCAAGATCATTGCAAAGCTTAACAACGACTGCTAAAACTCGGACAAGTTTTGTGGTT 240
Query 519 AGAGCTTCTTCAGCGTCTAATGATGCTTCATCTGGTTCTTCCCCCAAACCGATCGCTCCG 578
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AGAGCTTCTTCAGCGTCTAATGATGCTTCCTCTGGTTCTTCCCCCAAACCGATCGCTCCG 300
Query 579 CTCCAGCTGCAATCGCCTGCTGGTCAGTTTCTGTCTCAGATTTTGGTGAGCCATCCTCAT 638
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTCAGCTTCAATCGCCTGCTGGTCAGTTTCTGTCTCAGATTTTGGTGAGCCATCCTCAT 360
Query 639 CTTGTGCCTGCAGCTGTTGAACAGCAGCTTGAGCAGCTTCAAACTGATCGGGACTCTCAG 698
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 361 CTTGTGCCTGCAGCTGTTGAACAGCAGCTTGACCAGCTTCAAACTGATCGGGACTCTGAT 420
Query 699 GGACAGAACAAAGATTCAGCGTCTGTACCTGGAACCGACATCGTTCTCTACAGGAGAATT 758
||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 GGACAGAACAAGGATGCATCGTCTGTACCTGGAACCGACATCGTTCTCTACAAGAGAATT 480
Query 759 GCGGAG-TTGAAGGAAAACGAGAGAAGAAGAACATTGGAAGAGATTTTGTATGCATTGGT 817
|||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 481 GCGGAGGTT-AAGGAAAACGAGAGAAGAAGGACATTGGAGGAGATTTTGTATGCATTGGT 539
Query 818 GGTTCAAAAGTTCATGGAAGCTAACGTATCACTTGTACCTTCAGTAAGCCCATCTTCAGA 877
||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||
Sbjct 540 GGTTCAAAAGTTCATGGAATCTAATGTATCACTTGTACCATCAGTAAGCCCATCTTCAGA 599
Query 878 TCCGTCTGGTCGGGTTGATACTTGGCCGACCAAAGTGGAGAAACTCGAGCGGCTTCACTC 937
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TCCGTCTGGTCGGGTTGATACTTGGCCGACCAAAGTGGAGAAACTTGAGCGGCTTCACTC 659
Query 938 GCCCGAGATGTACGAGATGATTCACAACCATCTTGCCTTGATTCTTGGAAGCAGAATGGG 997
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 660 GCCCGAGATGTACGAGATGATTCACAACCATCTAGCCCTCATTCTTGGAAGCAGAATGGG 719
Query 998 TGATCTGAACTCTGTTGCACAGATAAGCAAGCTCAGAGTTGGCCAAGTTTACGCTGCTTC 1057
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 TGATCTGAACTCTGTTGCTCAGATAAGCAAGCTCAGAGTTGGGCAAGTTTACGCTGCTTC 779
Query 1058 TGTGATGTATGGATATTTCTTGAAGAGGGTGGACCAAAGGTTTCAGCTTGAGAAGACGAT 1117
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGTTATGTATGGATATTTCTTGAAGAGGGTGGACCAAAGGTTTCAGCTTGAGAAGACGAT 839
Query 1118 GAAGATTCTTCCGGGTGGGTCGGATGAAAGTAAAACAAGCGTTGAGCAAGCC-GAGGGGA 1176
|||||||||||| ||||||| |||||||||||||||||||||||| ||| || |||| ||
Sbjct 840 GAAGATTCTTCCTGGTGGGTTGGATGAAAGTAAAACAAGCGTTGAACAA-CCAGAGGAGA 898
Query 1177 CGGCAACATATCAGGCGGCTGTATCGTCTCACCCAGAGGTTGGTGCATTTGCGGGCGGAG 1236
| ||||||||||||| | ||| |||||||||||||||||| ||||||| |||||||
Sbjct 899 AAACGACATATCAGGCGG-T--ATCCTCTCACCCAGAGGTTGGTTCATTTGCAGGCGGAG 955
Query 1237 TTAGTGCTAAGGGCTTCGGCAGCGAGATTAAACCATCCCGATTAAGGTCATATGTGATGT 1296
|||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||
Sbjct 956 TTAGTGCTAAGGGCTTTGGCAGTGAGATTAAACCGTCCCGGTTAAGGTCATACGTGATGT 1015
Query 1297 CATTTGATGCGGAGACGCTGCAGAGATACGCCACTATAAGATCAAGAGAAGCAGTTGGAA 1356
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1016 CATTCGATGCGGAGACGCTTCAGAGATACGCCACTATAAGATCAAGAGAAGCTGTTGGAA 1075
Query 1357 TCATCGAGAAGCACACAGAGGCATTGTTTGGTAAGCCTGAGATTGTAATAACACCGGAGG 1416
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1076 TCATCGAGAAGCACACAGAGGCATTGTTTGGTAAGCCCGAGATTGTAATAACACCAGAAG 1135
Query 1417 GCACAGTCGATTCATCGAAGGACGAACAGATAAAGATCAGCTTCGGTGGAATGAAGAGGC 1476
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GAACGGTTGATTCATCGAAGGACGAACAGATAAAGATCAGCTTCGGTGGAATGAAGAGGC 1195
Query 1477 TCGTCTTGGAGGCAGTTACTTTCGGGTCGTTCCTTTGGGATGTTGAGAGCCATGTAGATG 1536
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TCGTCTTGGAGGCTGTAACTTTCGGGTCGTTCCTTTGGGATGTTGAGAGCCATGTAGATG 1255
Query 1537 CGAGGTACCACTTTGTATTGAACTAA 1562
| ||||||||||||||||||||||||
Sbjct 1256 CTAGGTACCACTTTGTATTGAACTAA 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5