BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17820.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479266 jgi|Araly1|479266|fgenesh2_kg.3__1967__AT3G17820.1 1864 0.0
Ahg475723 jgi|Araly1|475723|fgenesh2_kg.2__853__AT1G66200.1 712 0.0
Ahg922713 jgi|Araly1|922713|scaffold_103994.1 124 1e-27
Ahg917469 jgi|Araly1|917469|Al_scaffold_0008_2220 122 5e-27
Ahg943026 jgi|Araly1|943026|scaffold_603570.1 117 2e-25
Ahg942996 jgi|Araly1|942996|scaffold_603540.1 117 2e-25
Ahg938169 jgi|Araly1|938169|scaffold_502360.1 117 2e-25
Ahg933032 jgi|Araly1|933032|scaffold_401020.1 117 2e-25
Ahg931931 jgi|Araly1|931931|scaffold_304388.1 117 2e-25
Ahg928382 jgi|Araly1|928382|scaffold_300839.1 117 2e-25
Ahg923205 jgi|Araly1|923205|scaffold_104486.1 117 2e-25
Ahg906029 jgi|Araly1|906029|Al_scaffold_0003_3157 117 2e-25
Ahg895267 jgi|Araly1|895267|Al_scaffold_0006_3263 117 2e-25
Ahg894204 jgi|Araly1|894204|Al_scaffold_0006_2200 117 2e-25
Ahg887441 jgi|Araly1|887441|Al_scaffold_0234_4 117 2e-25
Ahg947438 jgi|Araly1|947438|scaffold_703667.1 115 8e-25
Ahg945553 jgi|Araly1|945553|scaffold_701782.1 111 1e-23
Ahg937770 jgi|Araly1|937770|scaffold_501961.1 111 1e-23
Ahg931778 jgi|Araly1|931778|scaffold_304235.1 111 1e-23
Ahg949447 jgi|Araly1|949447|scaffold_801334.1 106 5e-22
> Ahg479266 jgi|Araly1|479266|fgenesh2_kg.3__1967__AT3G17820.1
Length=1270
Score = 1864 bits (1009), Expect = 0.0
Identities = 1137/1199 (95%), Gaps = 8/1199 (1%)
Strand=Plus/Plus
Query 1 CTCTATAAACACACACTCTCAGGAGAGAAGTTGTATTGATCGTCTTCTCTTTCCCTAAAC 60
|||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct 1 CTCTATAAACACACACTCTCAGGAGAGAAGTTGTATTGATCG-----TC-TTCCCT-AA- 52
Query 61 ACACTGATTATTTTCTCTCCGACGCCGCCATGTCTCTGCTCTCAGATCTCGTTAACCTCA 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 53 ACACTGATTATTTTCTCTCCGACGCCGCCATGTCTCTGCTATCAGATCTCGTTAACCTCA 112
Query 121 ACCTCACCGATGCCACCGGGAAAATCATCGCCGAATACATATGGATCGGTGGATCTGGAA 180
||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 113 ACCTCTCCGACGCCACCGAAAAAATCATCGCCGAATACATATGGATCGGTGGATCTGGAA 172
Query 181 TGGATATCAGAAGCAAAGCCAGGACACTACCAGGACCAGTGACTGATCCATCAAAGCTTC 240
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 173 TGGACATCAGAAGCAAAGCCAGGACACTACCAGGACCAGTCACTGATCCATCAAAGCTTC 232
Query 241 CCAAGTGGAACTACGACGGATCCAGCACCGGTCAGGCTGCTGGAGAAGACAGTGAAGTCA 300
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 233 CCAAATGGAACTACGACGGATCCAGCACCGGTCAGGCTGCCGGAGAAGACAGTGAAGTCA 292
Query 301 TTCTATACCCTCAGGCAATATTCAAGGATCCCTTCAGGAAAGGCAACAACATCCTGGTGA 360
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 293 TTCTATACCCTCAGGCGATATTCAAGGATCCATTCAGGAAAGGCAACAACATCCTGGTGA 352
Query 361 TGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGAGGCACAACGCTG 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 353 TGTGTGATGCTTACACACCAGCTGGTGATCCAATTCCAACCAACAAGAGGCACAACGCTG 412
Query 421 CTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTGGTATGGGATTGAGCAAG 480
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 413 CTAAGATCTTCAGCCACCCCAACGTTGCCTCTGAGGAGCCTTGGTATGGAATTGAGCAAG 472
Query 481 AATACACTTTGATGCAAAAGGATGTGAACTGGCCAATTGGTTGGCCTGTTGGTGGCTACC 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 473 AATACACTTTGATGCAAAAGGACGTGAACTGGCCAATTGGTTGGCCTGTTGGTGGTTTCC 532
Query 541 CTGGCCCTCAGGGACCTTACTACTGTGGTGTGGGAGCTGACAAAGCCATTGGTCGTGACA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTGGCCCTCAGGGACCTTACTACTGTGGTGTGGGAGCTGACAAAGCCATTGGTCGTGACA 592
Query 601 TTGTGGATGCTCACTACAAGGCCTGTCTTTACGCCGGTATTGGTATTTCTGGTATCAATG 660
|||||||||| |||||||| |||||| |||||||||||||||| ||||||||| ||||||
Sbjct 593 TTGTGGATGCACACTACAAAGCCTGTATTTACGCCGGTATTGGCATTTCTGGTGTCAATG 652
Query 661 GAGAAGTCATGCCAGGCCAGTGGGAGTTCCAAGTCGGCCCTGTTGAGGGTATTAGTTCTG 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 653 GAGAAGTCATGCCTGGCCAGTGGGAGTTCCAAGTCGGCCCTGTTGAGGGTATTGGTGCTG 712
Query 721 GTGATCAAGTCTGGGTTGCTCGATACCTTCTCGAGAGGATCACTGAGATCTCTGGTGTAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GTGATCAAGTCTGGGTTGCTCGATACCTTCTCGAGAGGATCACTGAGATCTCTGGTGTAA 772
Query 781 TTGTCAGCTTCGACCCGAAACCAGTCCCGGGTGACTGGAATGGAGCTGGAGCTCACTGCA 840
||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 773 ATGTCAGCTTCGACCCAAAACCAGTCCCGGGTGATTGGAACGGAGCTGGAGCTCACTGCA 832
Query 841 ACTACAGCACTAAGACAATGAGAAACGATGGAGGATTAGAAGTGATCAAGAAAGCGATAG 900
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 833 ACTACAGTACTAAGACAATGAGGAACGATGGAGGATTAGAAGTGATCAAGAAAGCGATAG 892
Query 901 GGAAGCTTCAGCTGAAACACAAAGAACACATTGCTGCTTACGGTGAAGGAAACGAGCGTC 960
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 893 GGAAGCTTCAGCTGAAACACAAAGAACACATTGCTGCTTACGGTGAAGGCAACGAGCGTC 952
Query 961 GTCTCACTGGAAAGCACGAAACCGCAGACATCAACACATTCTCTTGGGGAGTCGCGAACC 1020
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 953 GTCTCACTGGAAAGCACGAAACCGCAGACATCAACACTTTCTCTTGGGGAGTCGCAAACC 1012
Query 1021 GTGGAGCGTCAGTGAGAGTGGGACGTGACACAGAGAAGGAAGGTAAAGGGTACTTCGAAG 1080
||||||| || || ||| | ||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 1013 GTGGAGCATCCGTTAGAATTGGACGTGACACTGAGAAAGAAGGTAAAGGTTACTTCGAGG 1072
Query 1081 ACAGAAGGCCAGCTTCTAACATGGATCCTTACGTTGTCACCTCCATGATCGCTGAGACGA 1140
|| |||||||||||||||||||||||||||| |||||||| |||||||||||||| || |
Sbjct 1073 ACCGAAGGCCAGCTTCTAACATGGATCCTTATGTTGTCACTTCCATGATCGCTGAAACCA 1132
Query 1141 CCATACTCGGTTGATGACACATTTCATGATTTGATTTCTCTCCAATTTGGttttttttt 1199
|||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1133 CCATCCTCGGTTGATGACACGTTTCATGATTTGATTTCTCTCCCATTTGGTTTTTTTTT 1191
> Ahg475723 jgi|Araly1|475723|fgenesh2_kg.2__853__AT1G66200.1
Length=1429
Score = 712 bits (385), Expect = 0.0
Identities = 847/1064 (80%), Gaps = 56/1064 (5%)
Strand=Plus/Plus
Query 103 CAGATCTCGTTAACCTCAACCTCACCGATGCCACCG-GGAAA-ATCATCGCCGAATACAT 160
||||||| |||||||| ||||| | || | || | | ||| |||||||| ||||||||
Sbjct 113 CAGATCTTGTTAACCTTGACCTCTCAGA--CAACAGTGAAAAGATCATCGCTGAATACAT 170
Query 161 ATGGATCGGTGGATCTGGAATGGATATCAGAAGCAAAGCCAGGACACTACCAGGACCAGT 220
|||| | ||||| ||||| || || || ||||||||||||||||| ||| |||| || ||
Sbjct 171 ATGGGTTGGTGGTTCTGGTATAGACATGAGAAGCAAAGCCAGGACTCTATCAGGTCCTGT 230
Query 221 GACTGATCCATC-AAAGCTTCCCAAGTGGAACTACGACGGATCCAGCACCGGTCAGGCTG 279
||| |||||||| ||| ||||| || |||||||| || || || ||||| ||||| |||
Sbjct 231 GACCGATCCATCGAAA-CTTCCGAAATGGAACTATGATGGTTCAAGCACTGGTCAAGCTC 289
Query 280 CTGG-AGAAGACAGTGAAGTCATTC-TATACCCTCAGGCAATATTCAAGGATCCCTTCAG 337
|||| | |||| |||||||| | || |||||||||| || || ||||| ||||| ||| |
Sbjct 290 CTGGTA-AAGATAGTGAAGTGA-TCTTATACCCTCAAGCGATTTTCAAAGATCCGTTCCG 347
Query 338 GAAAGGCAACAACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCC 397
| |||||||||||| || || ||||||||||||||||| || || || || || || ||
Sbjct 348 TAGAGGCAACAACATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGCGAGCCAATCCC 407
Query 398 AACCAACAAGAGGCACA-AC-GCTGCTAAGATCTTCAGC-CACCCCGAC-GTTGCCAAG- 452
|| |||||| | ||| | || ||| ||||||| || |||| | | |||| ||
Sbjct 408 TACGAACAAG-CG-ACATGCTGCAGCTGAGATCTT-TGCTAACCCTG-CTGTTG--TAGC 461
Query 453 -GAGGAGCCTTGGTATGGGATTGAGCAAGAATACACTTTGATGCAAAAGGATGTGAACTG 511
|| | ||| |||||||| || || ||||||||||||||| |||| ||||||||||||||
Sbjct 462 TGAAGTGCCATGGTATGGAATCGAACAAGAATACACTTTGTTGCAGAAGGATGTGAACTG 521
Query 512 GCCAATTGGTTGGCCTGTTGGTGGCTACCCTGGCCCTCAGGGACCTTACTACTGTGGTGT 571
||| |||| ||||| |||||||||||||||||||||||||||| |||||||| || |
Sbjct 522 GCCTCTTGGATGGCCCATTGGTGGCTACCCTGGCCCTCAGGGACCATACTACTGCAGTAT 581
Query 572 GGGAGCTGACAAAGCCATTGGTCGTGACATTGTGGATGCTCACTACAAGGCCTGTCTT-T 630
|||||||||||| | |||| | |||||||| ||||||||||||||||| ||| || |
Sbjct 582 TGGAGCTGACAAATCTTTTGGAAGAGACATTGTTGATGCTCACTACAAGGCTTGT-TTGT 640
Query 631 ACGCCGGTATTGGTATTTCTGGTATCAATGGAGAAGTCATGCCAGGCCAGTGGGAGTTCC 690
| || || || || ||| |||||||||||||||||||| || |||||||||||||
Sbjct 641 ATGCTGGAATCAACATCAGTGGGATCAATGGAGAAGTCATGCCGGGTCAGTGGGAGTTCC 700
Query 691 AAGTCGGCCC-T-GTTGAGGGTAT-T-AG-TTCTGGTGATCAAGTCTGGGTTGCTCGATA 745
|||||||||| | | | || ||| | || ||||| ||| | || ||| | ||||| ||
Sbjct 701 AAGTCGGCCCATCGGTC-GG-TATCTCAGCTTCTGATGA--A-GTGTGGATCGCTCGTTA 755
Query 746 CCTTCTCGAGAGGATCACTGAGATCT-CTGGTGTAATTGTCAGCTTC-GACCCGAAACC- 802
| || | ||||||||||| ||||| | ||||||| |||| | ||| |||||||||||
Sbjct 756 CATTTTGGAGAGGATCACAGAGAT-TGCTGGTGTGGTTGT-ATCTTTTGACCCGAAACCG 813
Query 803 AGTCCCGGGTGACTGGAATGGAGCTGGAGCTCACTGCAACTACAGCACTAAGA-CAATGA 861
| |||||||||| ||||| |||||||| |||||| ||||||||| ||||| | | ||||
Sbjct 814 A-TCCCGGGTGATTGGAACGGAGCTGGTGCTCACACCAACTACAGTACTAA-ATCGATGA 871
Query 862 GA-AACGATGGAGGATTA-GA-AGTGATCAAGAAAGCGATAGGGAAGCTTCAG-CTGAA- 916
| || || ||||||| | || | | |||||||| ||||| | |||||| | | || ||
Sbjct 872 GGGAA-GAAGGAGGAT-ACGAGA-TAATCAAGAAGGCGATTGAGAAGCT-CGGACT-AAG 926
Query 917 ACACAAAGAACACATTGCTGCTTACGGTGAAGGAAACGAGCGTCGTCTCACTGGAAAGCA 976
|||||| ||||||||| | ||||||||||||||||||||||| |||||||| ||| | ||
Sbjct 927 ACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGCCGTCTCACGGGACACCA 986
Query 977 CGAAACCGCAGACATCAACACATTCTCTT-GGGGAGTCGCGAACCGTGGAGCGTC-AGTG 1034
|||||||| ||||||||||| ||| ||| |||| || |||||||||||||| || | |
Sbjct 987 TGAAACCGCTGACATCAACACTTTC-CTTTGGGGTGTTGCGAACCGTGGAGCATCGA-TC 1044
Query 1035 AGAGTGGGACGTGACACAGAGAAGGAAGGTAAAGGGTACTTCGAAGACAGAAGGCCAGCT 1094
|||| ||||| || || ||||| ||||| ||||| ||||| || || || |||||||||
Sbjct 1045 CGAGTAGGACGCGATACCGAGAAAGAAGGGAAAGGATACTTTGAGGATAGGAGGCCAGCT 1104
Query 1095 TCTAACATGGATCCTTACGTTGTCACCTCCATGATCGCTGAGAC 1138
|| |||||||| |||||| |||| || |||||||| || |||||
Sbjct 1105 TCAAACATGGACCCTTACATTGTTACTTCCATGATTGCAGAGAC 1148
> Ahg922713 jgi|Araly1|922713|scaffold_103994.1
Length=477
Score = 124 bits (67), Expect = 1e-27
Identities = 112/133 (84%), Gaps = 5/133 (4%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTG-GTAT 467
|||||||||||||||| || ||||| |||| ||||||| ||||||||||| || |
Sbjct 81 GGCACAACGCTGCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTGTGT-T 138
Query 468 G-GGATTGAGCAA 479
| ||||| |||||
Sbjct 139 GTGGATT-AGCAA 150
> Ahg917469 jgi|Araly1|917469|Al_scaffold_0008_2220
Length=165
Score = 122 bits (66), Expect = 5e-27
Identities = 95/109 (87%), Gaps = 1/109 (1%)
Strand=Plus/Plus
Query 360 ATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGAGGCACAACGCT 419
||||||||| |||| ||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 4 ATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGAGGCACAACGCT 63
Query 420 GCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTGGTATG 468
||||| || ||||| ||||| | ||||| ||||||||||||||||
Sbjct 64 GCTAAAATTTTCAGACACCCAT-CATTGCCTCCGAGGAGCCTTGGTATG 111
> Ahg943026 jgi|Araly1|943026|scaffold_603570.1
Length=343
Score = 117 bits (63), Expect = 2e-25
Identities = 98/115 (85%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTG 463
|||||||||||||||| || ||||| |||| ||||||| |||||||||||
Sbjct 81 GGCACAACGCTGCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTG 134
> Ahg942996 jgi|Araly1|942996|scaffold_603540.1
Length=343
Score = 117 bits (63), Expect = 2e-25
Identities = 98/115 (85%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTG 463
|||||||||||||||| || ||||| |||| ||||||| |||||||||||
Sbjct 81 GGCACAACGCTGCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTG 134
> Ahg938169 jgi|Araly1|938169|scaffold_502360.1
Length=343
Score = 117 bits (63), Expect = 2e-25
Identities = 98/115 (85%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTG 463
|||||||||||||||| || ||||| |||| ||||||| |||||||||||
Sbjct 81 GGCACAACGCTGCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTG 134
> Ahg933032 jgi|Araly1|933032|scaffold_401020.1
Length=343
Score = 117 bits (63), Expect = 2e-25
Identities = 98/115 (85%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTG 463
|||||||||||||||| || ||||| |||| ||||||| |||||||||||
Sbjct 81 GGCACAACGCTGCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTG 134
> Ahg931931 jgi|Araly1|931931|scaffold_304388.1
Length=343
Score = 117 bits (63), Expect = 2e-25
Identities = 98/115 (85%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTG 463
|||||||||||||||| || ||||| |||| ||||||| |||||||||||
Sbjct 81 GGCACAACGCTGCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTG 134
> Ahg928382 jgi|Araly1|928382|scaffold_300839.1
Length=343
Score = 117 bits (63), Expect = 2e-25
Identities = 98/115 (85%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTG 463
|||||||||||||||| || ||||| |||| ||||||| |||||||||||
Sbjct 81 GGCACAACGCTGCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTG 134
> Ahg923205 jgi|Araly1|923205|scaffold_104486.1
Length=993
Score = 117 bits (63), Expect = 2e-25
Identities = 98/115 (85%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTG 463
|||||||||||||||| || ||||| ||||| | ||||| |||||||||||
Sbjct 81 GGCACAACGCTGCTAAAATTTTCAGACACCCAT-CATTGCCTCCGAGGAGCCTTG 134
> Ahg906029 jgi|Araly1|906029|Al_scaffold_0003_3157
Length=240
Score = 117 bits (63), Expect = 2e-25
Identities = 92/106 (87%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 360 ATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGAGGCACAACGCT 419
||||||||| |||| ||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 4 ATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGAGGCACAACGCT 63
Query 420 GCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTGGT 465
||||| || ||||| |||| ||||||| |||||||||||||
Sbjct 64 GCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTGGT 108
> Ahg895267 jgi|Araly1|895267|Al_scaffold_0006_3263
Length=171
Score = 117 bits (63), Expect = 2e-25
Identities = 92/106 (87%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 360 ATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGAGGCACAACGCT 419
||||||||| |||| ||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 4 ATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGAGGCACAACGCT 63
Query 420 GCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTGGT 465
||||| || ||||| |||| ||||||| |||||||||||||
Sbjct 64 GCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTGGT 108
> Ahg894204 jgi|Araly1|894204|Al_scaffold_0006_2200
Length=171
Score = 117 bits (63), Expect = 2e-25
Identities = 92/106 (87%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 360 ATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGAGGCACAACGCT 419
||||||||| |||| ||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 4 ATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGAGGCACAACGCT 63
Query 420 GCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTGGT 465
||||| || ||||| |||| ||||||| |||||||||||||
Sbjct 64 GCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTGGT 108
> Ahg887441 jgi|Araly1|887441|Al_scaffold_0234_4
Length=249
Score = 117 bits (63), Expect = 2e-25
Identities = 92/106 (87%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 360 ATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGAGGCACAACGCT 419
||||||||| |||| ||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 4 ATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGAGGCACAACGCT 63
Query 420 GCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTGGT 465
||||| || ||||| |||| ||||||| |||||||||||||
Sbjct 64 GCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTGGT 108
> Ahg947438 jgi|Araly1|947438|scaffold_703667.1
Length=298
Score = 115 bits (62), Expect = 8e-25
Identities = 99/117 (85%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| ||||||||||||| ||| ||| ||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTTCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTGGT 465
|||||||||||||||| || ||||| |||| ||||||| |||||||||||||
Sbjct 81 GGCACAACGCTGCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTGGT 136
> Ahg945553 jgi|Araly1|945553|scaffold_701782.1
Length=343
Score = 111 bits (60), Expect = 1e-23
Identities = 97/115 (84%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTG 463
|||||||||||||||| || || || |||| ||||||| |||||||||||
Sbjct 81 GGCACAACGCTGCTAAAATTTTTAGACACCAAT-CGTTGCCTCCGAGGAGCCTTG 134
> Ahg937770 jgi|Araly1|937770|scaffold_501961.1
Length=343
Score = 111 bits (60), Expect = 1e-23
Identities = 97/115 (84%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| |||||| |||||| ||| ||||||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAACTGGTGTTCCAATTCCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTG 463
|||||||||||||||| || ||||| |||| ||||||| |||||||||||
Sbjct 81 GGCACAACGCTGCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTG 134
> Ahg931778 jgi|Araly1|931778|scaffold_304235.1
Length=343
Score = 111 bits (60), Expect = 1e-23
Identities = 80/90 (89%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA 408
|||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA 80
Query 409 GGCACAACGCTGCTAAGATCTTCAGCCACC 438
|||||||||||||||| || ||||| ||||
Sbjct 81 GGCACAACGCTGCTAAAATTTTCAGACACC 110
> Ahg949447 jgi|Araly1|949447|scaffold_801334.1
Length=426
Score = 106 bits (57), Expect = 5e-22
Identities = 97/116 (84%), Gaps = 3/116 (3%)
Strand=Plus/Plus
Query 349 ACATCCTGGTGATGTGTGATGC-TTACACACCAGCTGGTGATCCTATTCCAACCAACAAG 407
|||| | ||| ||||||||| | ||| ||||||||||||| ||| ||| |||||||||||
Sbjct 21 ACATGCAGGTTATGTGTGAT-CTTTATACACCAGCTGGTGTTCCAATTACAACCAACAAG 79
Query 408 AGGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTG 463
||||||||||||||||| || ||||| |||| ||||||| |||||||||||
Sbjct 80 AGGCACAACGCTGCTAAAATTTTCAGACACCAAT-CGTTGCCTCCGAGGAGCCTTG 134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5