BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17830.1
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479267 jgi|Araly1|479267|fgenesh2_kg.3__1968__AT3G17830.1 2606 0.0
> Ahg479267 jgi|Araly1|479267|fgenesh2_kg.3__1968__AT3G17830.1
Length=1639
Score = 2606 bits (1411), Expect = 0.0
Identities = 1569/1643 (95%), Gaps = 19/1643 (1%)
Strand=Plus/Plus
Query 7 CGTGTAAGAAGATGACCACTGAGCAAAAACCACGTTAAAACCCTCCGCCTCTGAAATTCC 66
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 CGTGTAAGAAGATGACCACTGAGCAAAAACCACGTTAAAACCCTCCGCCTATGAAATTCC 60
Query 67 GGA------G-GGG-GATGAAATGGCTGCAATGGCTCGCTGTGCTTTGATTCCATCTATA 118
||| | ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAGGCTTCGAGGGAGATGAAATGGCTGCAATGGCTCGCTGTGCTTTGATTCCATCTATA 120
Query 119 AACCCAGCTCATAGCTTCCGTCATCAGTTTCCGCAACCCAATGCGTCATTCTAT-TTACC 177
|||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 121 AACCCAGCTCATAGCTTCCGTCATCAGTTTCCGCAACCCAATGCATCATTCT-TCTTACC 179
Query 178 TCCCACTCTTCCG-ATTTTTTCGCGTGTTCGGAGATTTGGAATTTCCGGCGGATATCGCC 236
||||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 180 TCCCACTCTACCGAATTTTTT-GCGTGTTCGGAGATGTGGAATTTCCGGCGGATATCGCC 238
Query 237 GCCGTGTGATCACCATGGCCGCCGGAACTGATCACTACTCGACTTTGAATGTGAACCGCA 296
|||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 239 GCCGTGTGATCATCATGGCAGCCGGAACCGATCACTACTCCACTTTGAATGTGAACCGCA 298
Query 297 ATGCCACCTTGCAGGAGATCAAGAGCTCGTATAGAAAACTCGCTCGCAAGTATCACCCAG 356
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 ACGCTACCTTGCAGGAGATCAAGAGCTCGTATAGAAAACTCGCTCGCAAGTATCACCCGG 358
Query 357 ATATGAACAAGAACCCTGGTGCAGAAGATAAGTTCAAACAGATAAGTGCTGCTTACGAGG 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 ATATGAACAAGAACCCTGGTGCAGAAGATAAGTTCAAACAGATTAGTGCTGCTTACGAGG 418
Query 417 TATTATCTGATGAGGAGAAGAGATCTGCCTATGATCGGTTCGGCGAGGCTGGTTTAGAAG 476
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 419 TATTATCTGATGAGGAGAAGAGATCTGCATATGATCGATTCGGCGAGGCAGGTTTAGAAG 478
Query 477 GTGATTTTAATGGATCACAGGATACTTCACCAGGGGTGGATCCATTTGACTTGTACAGTG 536
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GAGATTTTAATGGATCACAGGATACTTCACCAGGGGTGGATCCATTTGACTTGTACAGTG 538
Query 537 CATTCTTTGGAGGTTCTGATGGATTCTTTGGGGGAATGGGTGAATCAGGAGGGATGGGTT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CATTCTTTGGAGGTTCTGATGGATTCTTTGGGGGAATGGGTGAATCAGGAGGGATGGGTT 598
Query 597 TTGATTTCATGAATAAGAGAAGCCTAGACCTTGACATTCGATATGACCTGCGGTTGAGCT 656
|||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||
Sbjct 599 TTGATTTCATGAATAAAAGAAGCCTAGACCTTGACATTCGGTGTGACCTGCGGTTGAGCT 658
Query 657 TTGAAGAGGCAGTTTTTGGAGTAAAACGGGAGATTGAGGTTTCTTATTTAGAAACATGTG 716
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 TTGAAGAGTCAGTTTTTGGAGTAAAACGGGAGATCGAGGTTTCTTATTTAGAAACATGTG 718
Query 717 ATGGTTGTGGAGGAACTGGTGCTAAATCCAGTAACTCCATTAAACAGTGTAGTAGTTGTG 776
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 719 ATGGTTGTGGAGGAACAGGTGCTAAATCCAGTAACGCCATTAAACAGTGTAGTAGCTGTG 778
Query 777 ATGGTAAAGGACGTGTGATGAATTCTCAGAGAACACCCTTTGGAATCATGTCTCAGGTGT 836
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 779 ATGGTAAAGGACGTGTGATGAACTCTCAGAGAACACCCTTTGGAATTATGTCTCAGGTGT 838
Query 837 CCACTTGCTCCAAATGTGGTGGTGAAGGAAAAA-CTATCACTGATAAGTGTCGAAAGTGC 895
|||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 839 CCACTTGCTCCAAATGTGGTGGTGAAGGCAAAATC-ATCACTGATAAGTGTCGAAAGTGC 897
Query 896 ATTGGCAACGGGAGACTACGGGCTAGGAAAAAGATGGATGTTGTAGTCCCTCCTGGTGTC 955
||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct 898 ATTGGCAACGGGAGACTACGGTCTAGGAAAAAAATGGATGTTGTTGTCCCTCCTGGTGTC 957
Query 956 AGCGATAGAGCCACAATGCGAATTCAAGGAGAAGGTAACATGGACAAGAGAAGTGGAAGA 1015
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 958 AGCGATAGAGCCACAATGCGAATTCAAGGAGAAGGTAACGTAGACAAGAGAAGTGGAAGA 1017
Query 1016 GCTGGTGACTTGTTCATCGTACTTCAAGTTGATGAGAAGCGTGGAATTCGGCGGGAAGGG 1075
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCCGGTGACTTGTTCATCGTACTTCAAGTTGATGAGAAGCGTGGAATTCGGCGGGAAGGG 1077
Query 1076 CTTAATTTATACTCCAATATCAACATAGATTTCACAGATGCTATACTTGGGGCGACCACA 1135
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1078 CTTAATTTATACTCCAATATCAACATAGATTTCACAGATGCTATACTTGGGGTGACCACA 1137
Query 1136 AAGGTAGAAACGGTTGAGGGATCAATGGATCTTCGGATTCCGCCAGGAACTCAACCTGGC 1195
||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 1138 AAGGTAGAAACGGTTGAGGGAACAATGGATCTTCGAATTCCGCCAGGAACTCAGCCTGGT 1197
Query 1196 GACACCGTAAAATTACCTAGGAAAGGAGTTCCAGACACGGATAGACCTTCAATCCGGGGA 1255
|||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 GACACCATGAAATTACCTAGGAAAGGAGTTCCAGACACAGATAGACCTTCAATCCGGGGA 1257
Query 1256 GACCATTGCTTTGTAGTGAAAATTTCGATCCCCAAAAAACTGAGCGAGAGGGAGCGCAAG 1315
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 GACCATTGCTTTGTAGTGAAGGTTTCGATCCCCAAAAAACTGAGCGAGACGGAGCGCAAG 1317
Query 1316 TTGGTAGAGGAATTCTCGTCGCTCAGAAGATCTAGTAGTAGTACTGGACCTACTGAAACT 1375
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1318 TTGGTAGAGGAATTCTCGTCGCTCAGAAGATCTAGTAGTAGTACTGGACCTAATGAAACT 1377
Query 1376 CGTCAAGAGGAGCAGAGTTTTGGCTCAGAGCCCAGAAAAGAACCA---TCTTTGTGGCAT 1432
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1378 CGTCAAGAGGAGCATTGTTTTGGCTCAGAGCCCAGAAAAGAACCACCGTCTTTGTGGCAT 1437
Query 1433 AAAATGAAGAATTTCATAAGACCAGAAGATTCAAGAACGAAATTTGGGACTATGAGCTTA 1492
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AAAATGAAGAATTTCATAAGACCAGAAGATTCAAGAACGAAATTTGGGACTATGAGCTTG 1497
Query 1493 AACCCATCATTACCATTACGAAGAATGAAAGTGTCAGAGACTTCAATTGCTTTT-TCAGT 1551
||||||||| ||||| ||||| ||||||||||||||||||||||||||| || | |||||
Sbjct 1498 AACCCATCACTACCACTACGAGGAATGAAAGTGTCAGAGACTTCAATTG-TTATCTCAGT 1556
Query 1552 CTTGGCTCTGTGCGTTATAACCTCGGCTGTTGCATTGGTACAGAAGAAGGGTAATCGCTT 1611
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1557 CTTGGCTCTGTGTGTTATAACCTCGGCTGTTGCATTGGTTCAGAAGAAGGGTAATCGCTC 1616
Query 1612 GAAACAAAAGAAAGAAACTTAAT 1634
|||||||||||||||||||||||
Sbjct 1617 GAAACAAAAGAAAGAAACTTAAT 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66810289730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5