BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17840.1
Length=2253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479268 jgi|Araly1|479268|fgenesh2_kg.3__1969__AT3G17840.1 3249 0.0
Ahg923183 jgi|Araly1|923183|scaffold_104464.1 1105 0.0
> Ahg479268 jgi|Araly1|479268|fgenesh2_kg.3__1969__AT3G17840.1
Length=2240
Score = 3249 bits (1759), Expect = 0.0
Identities = 2113/2274 (93%), Gaps = 63/2274 (3%)
Strand=Plus/Plus
Query 1 AAACCACACACACAGCTTCTTCACTGAGAGC-TTTTTTCTAGGGTTTCTCTCTTTGTTTC 59
|||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1 AAACCACACACAGAGCTTCTTCACTGAGAGCTTTTTTTCTAGGGTTTCTCTCTTCGTTTC 60
Query 60 TTACAATGCGACTCTTCTTCACACCGTCAATGTCCAAtctctccatattcttctcgattc 119
|||||||| | | | || || ||| | | ||||| |||| ||||
Sbjct 61 TTACAATG-G------------A--G--AA---CC--TCT-T-CGTATTCCTCTCCATTC 96
Query 120 ttctcctttctcttcctcttccGTCAATCGGAGATCTCGCCGCCGACAAATCCGCTCTTC 179
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 97 TTCTCCTCTCTCTTCCTCTTCCTTCAATCGGAGATCTCGCCGCCGACAAATCCGCTCTTC 156
Query 180 TCTCTTTTCGTTCCGCCGTCGGTGGTCGTACATTACTCTGGGACGTCAAGCAAACCTCAC 239
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 157 TCTCTCTTCGTTCCGCCGTCGGTGGTCGCACATTACTCTGGGACGTCAAACAAACCTCAC 216
Query 240 CATGCAACTGGACCGGCGTCTTATGCGACGGTGGTCGTGTTACTGCTCTTCGTCTTCCCG 299
|||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 217 CATGCAACTGGACCGGCGTCGTATGCGAAGGTGGTCGTGTTACCGCTCTTCGTCTTCCCG 276
Query 300 GTGAAACGCTCTCCGGTCATATACCGGAGGGTATTTTTGGTAATTTAACTCAGCTCCGGA 359
| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 277 GCGAAAAGCTCTCCGGTCATATACCGGAGGGTATTTTCGGTAATTTAACTCAGCTACGTA 336
Query 360 CGCTTAGTCTCCGTCTCAATGGTCTTACTGGTTCTCTTCCTTTGGATCTCGGAAGCTGCT 419
||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 337 CGCTTAGCCTCCGTCTCAATGGTCTTACTGGTACTCTTCCTTTGGATCTTGGAAGCTGCT 396
Query 420 CCGATCTTCGGCGTTTGTACCTGCAGGGTAACAGATTCTCCGGTGAGATTCCGGAGGTTT 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 397 CCGATCTTCGGCGTTTGTACCTGCAAGGTAACAGATTCTCCGGTGAGATTCCGGAGGTTT 456
Query 480 TGTTTAGTCTTAGTAACCTTGTTAGGTTGAATCTAGCTGAGAATGAATTTAGTGGAGAGA 539
||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 457 TGTTTAGTCTTAGTAACCTTGTTAGGTTGAATCTAGCGGAGAATGAATTTACCGGCGAGA 516
Query 540 TCTCGTCAGGGTTTAAAAACCTTACTAGGCTTAAGACTCTGTACCTGGAGAATAACAAGC 599
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 517 TCTCTTCAGGGTTTAAAAACCTTACTAGGCTTAAGACTCTGTACTTGGAAAATAACAAGC 576
Query 600 TCTCTGGCTCTCTT-TTAGACT-TGGATTTGTCTTTGGATCAGTTCAACGTTTCTAATAA 657
|||||||||||||| || || | |||||||| ||||||||||||||||||||||||||||
Sbjct 577 TCTCTGGCTCTCTTCTT-GA-TATGGATTTGCCTTTGGATCAGTTCAACGTTTCTAATAA 634
Query 658 CTTGTTGAACGGATCTATACCTAAGAGTTTGCAGAAGTTTGATTCTGATTCGTTTGTGGG 717
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 635 CTTGTTGAACGGATCTATACCTAAGAGTCTGCAGAAATTTGATTCTGATTCGTTTGTGGG 694
Query 718 AACTTCTCTCTGCGGCAAACCGCTTGTTGTCTGCTCTAATGAGGGAACTGTGCCAAGCCA 777
|||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 695 AACTTCACTCTGTGGCAAACCGCTTGTTGTCTGCTCTAATGAAGGAACTGTGCCTAGCCA 754
Query 778 GCCAATTTCTGTTGGCAATATTCCCGGAACTGTTGAAGGAAGTGAGGAGAAGAAGAAAAG 837
||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 755 GCCAATTTCTGTTGGAAATATTCCCGGAACTGTTGAAGGAAGTAAGGGGGAGAAGAAAAA 814
Query 838 GAAGAAGCTTTCTGGTGGAGCTATAGCTGGAATAGTGATTGGATGTGTGGTTGGTTTGTC 897
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 815 TAAGAAGCTTTCCGGTGGAGCAATAGCTGGAATAGTGATTGGATGTGTTGTTGGTTTCTC 874
Query 898 CCTGATTGTTATGATTTTGATGGTTCTCTTTAGGAAAAAGGGGAACGAGAGAACAAGGGC 957
|||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 875 CCTGATTGTTCTGGTTTTGATGGTTCTCTTTAGGAAAAAGGGGAACGAAAGAACAAGGGG 934
Query 958 CATTGACCTTGCAACCATCAAGCACCATGAAGTTGAAATTCCTGGCGAGAAAGCGGCCGT 1017
||| ||| |||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 935 CATCGACATTGCAACCATCAAGCAGCGTGAAGTTGAAATTCCTGGCGAGAAAGCGGCCGT 994
Query 1018 GGAAGCACCGGAGAATAGGAGCTATGTAAATGAGTACTCTCCGTCTGCAG-TGAAAGCTG 1076
|||||||| ||||||||||||||||| |||||||||||| ||| |||| | ||||||| |
Sbjct 995 GGAAGCACAGGAGAATAGGAGCTATGGAAATGAGTACTCCCCGGCTGC-GATGAAAGCGG 1053
Query 1077 TGGAAGTGAACAGTTCAGGGATGAAGAAGTTAGTGTTTTTTGGGAATGCGACAAAGGTCT 1136
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1054 TGGAAGTGAACAGTTCAGGGATGAAGAAATTAGTGTTTTTTGGGAATGCGACAAAGGTTT 1113
Query 1137 TCGATCTTGAGGATCTGTTGAGAGCTTCAGCGGAGGTTCTGGGGAAAGGAACGTTCGGGA 1196
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1114 TCGATCTTGAGGATCTGTTGAGAGCTTCGGCGGAGGTTCTGGGGAAAGGAACGTTCGGGA 1173
Query 1197 CAGCTTATAAAGCGGTGCTTGACGCGGTGACATTGGTGGCTGTGAAGAGACTGAAGGATG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 CAGCTTATAAAGCGGTGCTTGACGCGGTGACATTGGTGGCTGTGAAGAGACTGAAGGATG 1233
Query 1257 TAACGATGGCGGACAGAGAGTTTAAGGAGAAGATTGAGGTTGTTGGGGCGATGGATCATG 1316
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 1234 TGACGATGGCGGACAGAGAGTTCAAGGAGAAGATCGAGGTTGTTGGGGCGATGGACCATG 1293
Query 1317 AGAACTTGGTGCCCTTGAGAGCGTACTATTACAGTGGAGACGAGAAGCTGCTTGTCTATG 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 AGAACTTGGTGCCCTTGAGAGCGTACTATTACAGTGGAGACGAGAAGCTGCTTGTCTATG 1353
Query 1377 ACTTCATGCCTATGGGAAGCTTATCAGCTCTCTTACACGGAAACAAAGGTGCAGGCCGGC 1436
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1354 ACTTCATGCCTATGGGAAGCTTGTCAGCTCTCTTACACGGAAACAAAGGCGCAGGCCGGC 1413
Query 1437 CTCCATTGAACTGGGAAGTCAGATCAGGCATCGCCCTTGGAGCTGCTCGTGGCTTAGACT 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 CTCCATTGAACTGGGAAGTCAGATCAGGCATCGCCCTTGGAGCTGCTCGTGGCTTAGACT 1473
Query 1497 ATCTTCACTCACAAGACCCACTGAGCTCTCACGGAAACGTCAAGTCCTCCAATATCCTCT 1556
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1474 ATCTTCACTCACAAGACCCACTGAGCTCTCACGGAAACGTCAAGTCCTCCAATATCCTTT 1533
Query 1557 TAACAAACTCCCATGACGCACGAGTGTCTGATTTCGGCCTGGCTCAGCTTGTAAGCGCCT 1616
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1534 TAACAAACTCCCATGACGCACGAGTGTCTGATTTTGGCCTGGCTCAGCTTGTAAGCGCCT 1593
Query 1617 CATCCACAACCCCAAACCGGGCCACTGGGTACCGTGCGCCAGAAGTAACTGACCCGAGGC 1676
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1594 CATCCACTACCCCAAACCGGGCCACTGGGTACCGTGCGCCAGAAGTAACTGACCCAAGGC 1653
Query 1677 GTGTCTCACAGAAAGCGGACGTGTACAGCTTTGGTGTGGTGTTGCTAGAG-TTGCTCACC 1735
|||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||
Sbjct 1654 GTGTCTCACAGAAAGCGGACGTGTACAGCTTTGGTGTGGTATTGCTGGAGCTT-CTCACT 1712
Query 1736 GGAAAAGCTCCGTCTAACTCGGTGATGAACGAGGAAGGAATGGATTTGGCGAGGTGGGTG 1795
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1713 GGAAAAGCGCCATCTAACTCGGTGATGAATGAGGAAGGAATGGATTTGGCGAGGTGGGTG 1772
Query 1796 CATTCAGTGGCGAGAGAGGAGTGGAGGAATGAGGTTTTTGACTCGGAGCTGATGAGTATC 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 CATTCAGTGGCGAGAGAGGAGTGGAGGAATGAGGTTTTTGACTCGGAGCTGATGAGTATC 1832
Query 1856 GAGACAGTTGTCTCGGTGGAAGAAGAGATGGCGGAAATGCTGCAGCTGGGCATTGACTGT 1915
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 GAGACAGTGGTCTCGGTGGAAGAAGAGATGGCGGAAATGCTGCAGCTGGGCATTGACTGT 1892
Query 1916 ACAGAGCAGCACCCAGACAAGCGGCCAGTTATGGTGGAGGTGGTGAGAAGGATCCAGGAG 1975
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1893 ACAGAGCAGCACCCAGACAAGCGGCCAGTAATGGTGGAGGTGGTGAGGAGGATCCAGGAG 1952
Query 1976 TTGCGCCAATCGGGTGCAGATCGGGTGGGGTAAGA-CCATCAGATGAAAGGAGACTT-GA 2033
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1953 TTGCGCCAATCGGGTTCAGATCGGGTGGGGTAAGAACCATCAGATGAAAGGAGACTTTGC 2012
Query 2034 GACATGAGT-CTGTTCGATGATCTGAAGCGGCGACGTTTTCAGTGTTT-A-G-TT---T- 2085
|||| || | |||||||||| |||| || || ||||||| |||||| | | || |
Sbjct 2013 T-CATGGGTTC-GTTCGATGATATGAAACGACGGCGTTTTCGGTGTTTGATGATTAAGTG 2070
Query 2086 T--A----A-GAATATGGCGGGAATTAGAGTTGGGGTCGTTAATTAGATGtttttaattt 2138
| | | |||||||||||||||| ||||| ||||| | |||||||||||||||||
Sbjct 2071 TTTAGTTTAAGAATATGGCGGGAATTTGAGTTAGGGTC---AGTTAGATGTTTTTAATTT 2127
Query 2139 tggt-ttttttttt-ttGG-TTTCTTT---CATGTGTGGGCACTGATGATGAGGAGTTTC 2192
|||| ||||||||| || ||| ||| | |||||||||||||||||||||||||| |
Sbjct 2128 TGGTGTTTTTTTTTCTTTTCTTTTTTTTTTCTTGTGTGGGCACTGATGATGAGGAGTT-C 2186
Query 2193 GTGGTGGTTGTAATTATTAGTGCTTTTAACTTT-AACTTTATTTTCAATATTGT 2245
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2187 GTTGTGGTTGTAATTATTAGTGCTTTTAACTTTTAACTTTATTTTCAATATTGT 2240
> Ahg923183 jgi|Araly1|923183|scaffold_104464.1
Length=2005
Score = 1105 bits (598), Expect = 0.0
Identities = 1534/1971 (78%), Gaps = 124/1971 (6%)
Strand=Plus/Plus
Query 62 ACAATGCGACTCTTCTT-CAC-AC-CGTCAATGTCCAAtctctccatattcttctcga-t 117
||||||||| |||||| | | || |||| ||| | | |||||| | ||| |||| | |
Sbjct 18 ACAATGCGAGACTTCTTCCCCAACTCGTCCATGGCGATTCTCTCTGTTTTCCTCTC-ACT 76
Query 118 tcttctcctttctcttcctcttccGTCAATC-GGAGATCTCGCCGCCGACAAATCCGCTC 176
|||||||| ||||| |||||||| |||| | ||||||| |||||||| | | ||||
Sbjct 77 CCTTCTCCTCTCTCTCCCTCTTCCATCAA-CACAAGATCTCAACGCCGACAGAGCAGCTC 135
Query 177 TTCTCTCTTTTCGTTCCGCCGTCGGTGGTCGTACATTACTCTGGGACGTCAAGCAAACCT 236
| |||||| | || ||||||||||| || |||||||| | |||| || |||| |||||||
Sbjct 136 TCCTCTCTCTCCGCTCCGCCGTCGGCGGCCGTACATTTCGCTGGAACATCAAACAAACCT 195
Query 237 CACCATGCAACTGGACCGGCGTCTTATGCGACG-GTGGTC-GTGTTACTGCTCTTCGTCT 294
|||| || |||||| |||| ||| |||||| | || | | || || || || |||||
Sbjct 196 CACCGTGTAACTGGGCCGGTGTCAAATGCGA-GAGT-AACAGAGTCACAGCCCTCCGTCT 253
Query 295 TCCCGGTGAAACGCTCTCCGGTCATATACCGGAGGGTATTTTTGGTAATTTAACTCAGCT 354
||||| | | ||||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct 254 ACCCGGCGTTTCTCTCTCCGGTGACATTCCAGAGGGTATTTTCGGTAACTTAACTCAGCT 313
Query 355 CCGGACGCTTAGTCTCCGTCTCAATGGTCT-TACTGGTTCTCTTCCTTTGGATCTCGGAA 413
||| || || || ||||||||||||| ||| | |||| || || ||| |||||| | |
Sbjct 314 CCGTACACTCAGCCTCCGTCTCAATGCTCTCT-CTGGCTCACTCCCTAAAGATCTCAGTA 372
Query 414 GCTGC-TCCGA-TCTTCGGCGT-TTGTACCTGCAGGGTAACAGATTCTCCGGTGAGATTC 470
|| | ||| | ||| |||| | || ||| |||| || |||||||||||||| ||||| |
Sbjct 373 CCT-CTTCC-AGTCTCCGGCATCTT-TACTTGCAAGGAAACAGATTCTCCGGCGAGATAC 429
Query 471 CGGAGGTTTTGTTTAGTCTTAGTAACCTTGTTAGG-TTGAATCTAGCTGAGAATGAATTT 529
| || ||||| || || |||| | |||| || ||| || || || ||| ||| | |||
Sbjct 430 CTGAAGTTTTATTCAGCCTTACTCACCTCGTGAGGCTT-AACCTCGCTTCCAAT-AGTTT 487
Query 530 -AGTGGAGAGATCTCGTCAGGGTTT-AAAAACCTTACTAGGCTTAAGACTCTGTACCTGG 587
| || || ||||| ||| ||||| | ||||| | | ||| |||||||||| | |
Sbjct 488 CACCGGCGAAATCTCTTCA-GGTTTCACGAACCTCAGGAAGCTAAAGACTCTGTTTTTAG 546
Query 588 AGAATAA-CAAGCTCTCTGGCTC--TCTTTTAGACTTGGATTTGTCTTTGGATCAGTTCA 644
||||||| ||| |||||||| || || | ||||| ||||| |||||| ||| ||||
Sbjct 547 AGAATAATCAA-CTCTCTGGTTCAATC-CCT-GACTTAGATTTACCTTTGGTTCAATTCA 603
Query 645 ACGTTTCTAATAACTTGTTGAACGGATCTATACCTAAGAGT-TTGCAGAAGTTTGATTCT 703
| ||||| ||||||| ||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 604 ATGTTTCGAATAACTCGTTGAACGGATCTATACCTAAGAGTCTT-CAGAAGTTTGAGTCT 662
Query 704 GATTCGTTTGTGGGA-ACTTCTCTCTGCGGCAAACCGCTTGTTGTCTGCT-CTAATGAGG 761
||||||||| | | ||||| || || |||||||||||| | || | ||||||| |
Sbjct 663 GATTCGTTTCT-ACAGACTTCACTTTGTGGCAAACCGCTTAAACTTTG-TCCTAATGAAG 720
Query 762 GAACTGTGCCAAGCCAGCCAATTTCTGTTGG---CA-ATATTCC-CGGAACTGTTGAAGG 816
|||||| || || ||||| | ||||| ||| || | | || | | | ||||| |||
Sbjct 721 AAACTGTACCGAGTCAGCCTACTTCTGGTGGAAACAGA-ACACCACCG-AGTGTTG-AGG 777
Query 817 -AAGTGAGGAGAAGAAGAAAAGGAAGAAGCTTTCTGGTGGAGCTATAGCTGGAATAGTGA 875
|||| ||||||||||||||| ||| || ||||| ||||||||||| || ||||| ||||
Sbjct 778 AAAGTAAGGAGAAGAAGAAAAAGAACAAACTTTCCGGTGGAGCTATTGCCGGAATTGTGA 837
Query 876 TTGGATGTGTGGTTGG-TTTGTCCCTGATTGTTATGATTTTGATGGTTCTCTTTAGGAAA 934
| |||||||||||||| |||| | |||||||| |||| || ||||| |||| |||||||
Sbjct 838 TCGGATGTGTGGTTGGTTTTG-CTTTGATTGTTTTGATATTAATGGTGCTCTGTAGGAAA 896
Query 935 AAGGGGAACGAGAGAACAAGGGCCATTGACCT-TGCAACCATCAAGCACCATGAAGTTGA 993
||||| || |||||| |||| || |||| | | |||| ||||| || || ||| ||
Sbjct 897 AAGGGTAATGAGAGATCAAGAGCTGTTGATATCT-CAACAATCAAACAGCAAGAAACCGA 955
Query 994 AATTCCTGGCGAGAAAGCGGCCGTGGAAGCACCGGAGAATAGGAGCTA-T--GTAAATG- 1049
|||||| || || |||| || |||| | | ||| ||| | | || | || | ||
Sbjct 956 AATTCCCGGAGATAAAGAAGCGGTGG-A-TAATGGA-AAT--GTG-TATTCGGTGAGTGC 1009
Query 1050 AG-T--A-CT-CTCCG-T--CT-G-CA-GTG-AAAGCT-GTGGAAGTGAACAGTTCAGGG 1096
| | | || | || | || | | | | |||||| || |||| |||| || ||| |
Sbjct 1010 TGCTGCAGCTGCGGCGATGACTGGAAACG-GAAAAGCTAGT-GAAGGGAACGGTCCAGCG 1067
Query 1097 ATGAAGAAG-TTAGTGTTTTTTGGGAATGCGACAAAGGTCTTCGATCTTGAGGATC-TGT 1154
| ||||||| || ||||| ||||| |||||||| ||||| ||||||||||| || | |||
Sbjct 1068 ACGAAGAAGCTT-GTGTTCTTTGGTAATGCGACTAAGGTTTTCGATCTTGAAGA-CTTGT 1125
Query 1155 TGAGAGCTTCAGCGGAGGTTCTGGGGAAAGGAACGTTCGGGACAGCTTATAAAGCGGTGC 1214
|||||||||| ||||||||||| |||||||||||||| ||||| || ||||| |||||||
Sbjct 1126 TGAGAGCTTCTGCGGAGGTTCTTGGGAAAGGAACGTTTGGGACGGCGTATAAGGCGGTGC 1185
Query 1215 TTGACGCGGTGAC-ATTGGTGGCTGTGAAGAGACTGAAGGATGTAACGATGGCGGACAGA 1273
||||||||||||| || |||||||||||||| ||||||||||||| |||||| || | |
Sbjct 1186 TTGACGCGGTGACGGTT-GTGGCTGTGAAGAGGCTGAAGGATGTAATGATGGCTGATAAA 1244
Query 1274 GAGTTTAAGGAGAAGATTGAGGTT-GTTGGGGCGATGGATCATGAGAACTTGGTGCCCTT 1332
|||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||
Sbjct 1245 GAGTTTAAGGAGAAGATTGA-ATTGGTTGGTGCGATGGATCATGAGAACTTGGTGCCATT 1303
Query 1333 GAGAGCGTACTATTACAGTGGAGACGAGAAGCTGCTTGTCTATGACTTCATGCCTATGGG 1392
|||||| ||||||| ||| |||||||||| || |||||||| |||||||||||||||||
Sbjct 1304 GAGAGCTTACTATTTCAGCAGAGACGAGAAACTTCTTGTCTACGACTTCATGCCTATGGG 1363
Query 1393 AAGCTTATCAGCTCTCTTACACGGAAACAAAGGTGCAGGCCGGCCTCCATTGAACTGGGA 1452
||||||||||||||||||||| ||||||| ||| || || || |||| | ||||||||
Sbjct 1364 AAGCTTATCAGCTCTCTTACATGGAAACAGAGGAGCGGGAAGGAGTCCACTAAACTGGGA 1423
Query 1453 AGTCAGATCAGGCATCGCCCTTGGAGCTGCTCGTGGCTTAGACTATCTTCACTCACAAGA 1512
|| |||||| | || || |||| || | |||||| |||| ||| |||||||||||||
Sbjct 1424 TGTTAGATCACGAATTGCTATTGGTGCAGGTCGTGGTTTAGCCTACCTTCACTCACAAGG 1483
Query 1513 CCCA-CTGAGC-TCTCACGGAAACGTCAAGTCCTCCAATATCCTCTTAAC-AAACTCCCA 1569
| | | || | |||||||| ||| |||||||||| || ||||||||||| ||| |||||
Sbjct 1484 CACTTC-GA-CATCTCACGGCAACATCAAGTCCTCAAACATCCTCTTAACGAAA-TCCCA 1540
Query 1570 TGACGC-ACGAGTGTCTGA-TTTCGGCCTGGCTCAGCTTGTAAGCGCCTCATC--CA-CA 1624
||||| | ||| || || ||| ||| | |||||||| || | | ||||| || ||
Sbjct 1541 CGACGCTAA-AGTCTCAGACTTT-GGCTTAGCTCAGCTCGTG-G-GA-TCATCTGCAACA 1595
Query 1625 ACCCCAAACCGGGCCACTGGGT-ACCGTGCGCCAGAAGTAACTGACCCGAGGCGTGTCTC 1683
| |||||||| || || |||| ||||||| |||||||||||||| |||| || || ||
Sbjct 1596 AATCCAAACCGCGCTAC-GGGTTACCGTGCACCAGAAGTAACTGATCCGAAACGCGTGTC 1654
Query 1684 ACAGAAAGCG-GACGTGTACAGCTTT-GGTGTGGTGTTGCTAGAGTTGCTCACCGGAAAA 1741
||||| | | ||||||||||| ||| || ||||||||||| ||| || |||| || |||
Sbjct 1655 GCAGAAGG-GTGACGTGTACAG-TTTCGGAGTGGTGTTGCTTGAGCTGATCACGGGTAAA 1712
Query 1742 GCTCCGTCTAACTCGGTGATGAACGAGGAAGGAATGGATTTGGCGAGGTGGGTGCATTCA 1801
||||| || |||||||||||||||||||||||| |||||||| | || ||||| | ||
Sbjct 1713 GCTCCTTCGAACTCGGTGATGAACGAGGAAGGAGTGGATTTGCCCAGATGGGTTAAATCG 1772
Query 1802 GTGGCGAGAGAGGAGTGGAGGA-ATGAGGTTTTTGACTCGGAGCTGATGAGTATCGAGAC 1860
||||||||||| |||||||| | | |||||||||||||||||| || | ||| | | |||
Sbjct 1773 GTGGCGAGAGATGAGTGGAGAAGA-GAGGTTTTTGACTCGGAGTTGCTTAGTTTGGCGAC 1831
Query 1861 AGTTGTCTCGGTGGAAGAAGA-GATGGCGGAAATGCTGCAGCT-GGGCATTGACTGTACA 1918
| | || ||||| || ||||||||| ||| ||||||| |||| |||| |||||
Sbjct 1832 -G--GA---GGAAGAAGA-GACGATGGCGGAGATGGTGCAGCTAGGGC-TTGAGTGTAC- 1882
Query 1919 G--AGCAGCACCCAGACAAGCGGCCAGTTATGGT-GGAGGTGGTGAG-AAG 1965
| | ||||| || |||||| |||| | ||| | ||| ||||| || |||
Sbjct 1883 GTCA-CAGCATCCGGACAAGAGGCCGGAGATG-TCGGAAGTGGTTAGGAAG 1931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84826975615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5