BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17850.1
Length=4253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904752 jgi|Araly1|904752|Al_scaffold_0003_1880 6041 0.0
Ahg336969 jgi|Araly1|336969|fgenesh1_pg.C_scaffold_1003534 2630 0.0
> Ahg904752 jgi|Araly1|904752|Al_scaffold_0003_1880
Length=3984
Score = 6041 bits (3271), Expect = 0.0
Identities = 3609/3764 (96%), Gaps = 55/3764 (1%)
Strand=Plus/Plus
Query 214 ATGGTATTCAAGAACAAACTCTTCTTCTCTTCGAAGAAATCTGGATCTTCTAGTCCCGAT 273
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTATTCAAGAACAAGCTCTTCTTCTCTTCGAAGAAATCTGGATCTTCTAGTCCCGAT 60
Query 274 AGCTCTAATAGTCCCAGATCTGTTGGCTCCAACTCTCCGATACGATCAGATAAGAAGAAG 333
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AGCTCTAATAGTCCCAGATCTGTTGGCTCCAACTCTCCCATACGATCAGATAAGAAGAAG 120
Query 334 TCTAAATCCGCTTCCAAGGATGAACCTCCGATCCCTATTCCTGGATTTGTTGGAGTTGGT 393
||||||||||||||||||||||||||||||||||||| ||| || || ||||||
Sbjct 121 TCTAAATCCGCTTCCAAGGATGAACCTCCGATCCCTAATCC------TG--GG-GTTGGT 171
Query 394 TGCAAGCAGACGCAGATTAAAGATGGTTTGAAGAAGAAGGATGGTTCATCTAAGGGTAAA 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TGCAAGCAGACGCAGATTAAAGATGGTTTGAAGAAGAAGGATGGTTCATCTAAGGGTAAA 231
Query 454 CAACTTTCATCTGAAGTTCAAGCTCACTCTATTGGAAAATCGAACTTGTCTCCTAGTTCC 513
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 232 CAACTTTCATCTGAAGTTCAAGCTCACTCTATCGGAAAATCGAACTTGTCTCCTAGTTCT 291
Query 514 GAGGTGAAGAAACCACCTCCGCCGGAAGTGAAGGAAGGACCTGCTTTTGTTTCTCCAATC 573
|||| |||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 292 GAGGCGAAGAAACCACCGCCGCCGGAGGTGAAGGAAGGACCTGCTTTTGTGTCTCCAATC 351
Query 574 ATGGCTTCGTCTCTTGGG-TTGAACCGGATTAAGACGAGATCCGGACCTTTGCCACAGGA 632
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 352 ATGGCTTCGTCTC-TGGGTTTGAACCGGATTAAGACGAGATCCGGACCGTTGCCACAGGA 410
Query 633 AAGGGTTTTCAATTATAGGAATGATCCGGCTACGAGCAATTTGTCGAAGATGGGTGCTGA 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AAGGGTTTTCAATTATAGGAATGATCCGGCTACGAGCAATTTGTCGAAGATGGGTGCTGA 470
Query 693 TGGTGGTGACTTGGGCTCGGGTTCAGCTACTTCTGGCTCTGGTAGTGGCAATAGAAAGAA 752
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 471 TGGTGGTGACTTGGGCTCGGGTTCAGCCACTACTGGCTCTGGTAGTGGCAATAGAAAGAA 530
Query 753 AGAAGCTGGGAGTAGCAAGCTAGGGTTAGAAGAGAACATGGATCGCACTCGACCAAGTGA 812
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 531 AGAAGCTGGGAGTAGCAAGCTAGGGTTAGAAGAGAACATGGGTCGCACTCGACCAAGTGA 590
Query 813 CAATAAGAGTGATCGTGATAGTTTGTCTCCTGATACAGGACCACCGAGGAGCCTCAGCCC 872
|||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 591 CAATAAGAGTGATCGTGATAGTTTGTCTCCTGATGCTGGACCACCGCGGAGCCTCAGCCC 650
Query 873 TACTTTGCCGCCATCAGGATCTCGATTGCAGAATGTAGCATCCTCATCGGGAACTGGTCG 932
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TACTTTGCCGGCATTAGGATCTCGATTGCAGAATGTAGCATCCTCATCGGGAACTGGTCG 710
Query 933 CTCTGAGATGTCATCCGGTCGTTCTGGCCCTCTAAGAAATTCAGACTTTTGCACCCCAGA 992
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 711 CTCTGAGATGTCATCCGGTCGCTCTGGCCCTTTAAGAAATTCAGACTTTTGCACCCCAGA 770
Query 993 GAATTCATATGAATGGGAAAATCCCAAAGAGTCAGAATCGCCTCGTTATCAAGCCTTACT 1052
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 771 GAATTCATATGAATGGGAAAATCCCAAAGAGTCAGAATCACCACGTTATCAAGCCTTACT 830
Query 1053 TCGTATGACCAGTGCTCCACGAAAGAGGTTTCCTGGTGACATCAAAAGCTTTTCTCATGA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TCGTATGACCAGTGCTCCACGAAAGAGGTTTCCTGGTGACATCAAAAGCTTTTCTCATGA 890
Query 1113 GTTGAACTCAAAAGGTGTACGTCCCTTTCCATTATGGAAGCCTCGTAGGTCGAACAATGT 1172
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 891 GTTGAACTCAAAAGGGGTACGACCCTTTCCATTATGGAAGCCTCGTAGGTCGAACAATGT 950
Query 1173 GGAGGA---AGT-AT-TG--------A--A--T-------CTGATTCGGGCAAAATTTGA 1208
|||| | | | || || | | | |||||||| |||||||||||
Sbjct 951 GGAGAATCTAATCATCTGTCTTTTCCAGGAAATATTGGTTCTGATTCGAGCAAAATTTGA 1010
Query 1209 GAAAGCAAAGGAAGAAGTAAACTCTGACCTTGCAGTATTTGCAGCGGACCTGGTGGGAGT 1268
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1011 TAAAGCAAAGGAAGAAGTAAACTCTGACCTTGCAGTATTTGCAGCTGACCTGGTGGGAGT 1070
Query 1269 TCTTGAGAAAAATGCAGAAAGCCATCCTGAGTGGGAGGAAACATTTGAAGACTTGCTAAT 1328
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1071 TCTTGAGAAAAATGCAGAAAGCCATCCTGAGTGGGAGGAAACATTTGAAGACTTACTAAT 1130
Query 1329 TTTGGCTCGAAGTTGTGCTATGACTACTCCTGGAGATTTCTGGCTTCAGTGTGAAGGCAT 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TTTGGCTCGAAGTTGTGCTATGACTACTCCTGGAGATTTCTGGCTTCAGTGTGAAGGCAT 1190
Query 1389 TGTTCAGGACTTAGATGATAGACGTCAAGAGCTTCCCCCGGGCGTCCTCAAGCAGCTTCA 1448
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1191 TGTTCAGGACTTAGATGATAGACGTCAAGAGCTTCCTCCGGGCGTCCTCAAGCAGCTTCA 1250
Query 1449 TACTCGGATGCTTTTTATCCTTACCAGATGTACTAGATTACTTCAGTTTCATAAGGAAAG 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TACTCGGATGCTTTTTATCCTTACCAGATGTACTAGATTACTTCAGTTTCATAAGGAAAG 1310
Query 1509 CTGGGGGGAGGAGGAACAAGTTGTACAACTACGTCAGTCAAGAGTCTTGCATTCTATAGA 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CTGGGGGGAGGAGGAACAAGTTGTACAACTACGTCAGTCAAGAGTCTTGCATTCTATAGA 1370
Query 1569 GAAAATACCGCCGAGTGGAGCGGGAAGGAGTTACAGTGCTGCAAAGGT---A------CC 1619
||||||||| || | ||||||||||||||||| ||||||||||||||| | ||
Sbjct 1371 GAAAATACCTCCTACTGGAGCGGGAAGGAGTTCCAGTGCTGCAAAGGTCTTAAAGGTACC 1430
Query 1620 ATCTACCAAGAAAGCTTATAGTCAGGAGCAGCA-TGGTTTGGACTGGAAGGAAGACGCTG 1678
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct 1431 ATCTACCAAGAAAGCTTATAGTCAGGAGCAG-AGTGGTTTGGACTGGAAGGAAGACGCGG 1489
Query 1679 TTGTACGCTCAGTTCCCCCTCT-TGCTCCTCCTGAAAATTATGCTATAAAGGAATCTGAA 1737
|| ||||||||||||||||||| | |||| |||||||||||||| | ||||||||||||
Sbjct 1490 TTTTACGCTCAGTTCCCCCTCTCT-CTCCGACTGAAAATTATGCTCTTAAGGAATCTGAA 1548
Query 1738 TCTCCTGCAAACATTGATAGAATGTCTTCCTGGAAAAAACTTCCATCTCCAGCACTGAAA 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 TCTCCTGCAAACATTGATAGAATGTCTTCCTGGAAAAAACTTCCATCTCCAGCACTGAAA 1608
Query 1798 ACTGTGAAAGAAGCGCCAGCGTCAGAAGAGCAGAATGATAGCAAAGTTGAACCTCCAAAT 1857
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 1609 ACTGTGAAAGAAGCGCCAGCGTCAGATGAGCATAATGATATCAAAGTTGAACCTCCAAAT 1668
Query 1858 ATAGTTGGGAGTCGACAAGGTAGGGATGATGCCGCTGTTGCTATTCTCAACTTTCCTCCA 1917
|| ||||||| |||||||| ||| |||||||| ||||||||||||||||||| |||||||
Sbjct 1669 ATGGTTGGGAATCGACAAGCTAGCGATGATGCGGCTGTTGCTATTCTCAACTATCCTCCA 1728
Query 1918 GCAAAAGATTCTCATGAACACTCCTCCAAGCATCGGCACAATATTTCTTGGGGTTACTGG 1977
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1729 GCAAAAGATTCTCATGAACACTCC---AAGCATCGGCACAATATTTCTTGGGGTTACTGG 1785
Query 1978 GGGGAACAACCCCTTATTTCGGAGGAAAGTTCAATAATGTGCCGTATCTGTGAGGAGGAA 2037
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1786 GGAGAACAACCCCTTATTTCAGAGGAAAGTTCAATAATGTGCCGTATCTGTGAGGAGGAA 1845
Query 2038 GTTCCGACAACTCATGTGGAAGATCACTCTAGGGTTTGTACATTGGCTGATAAATATGAC 2097
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846 GTTCCCACAACACATGTGGAAGATCACTCTAGGGTTTGTACATTGGCTGATAAATATGAC 1905
Query 2098 CAGAAAGGACTGAGTGTTGATGAGCGACTGATGGCAGTTGCTGGTACACTTGACAAGATA 2157
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1906 CAGAAAGGACTGAGTGTTGATGAGCGGTTGATGGCAGTTGCTGGAACACTTGACAAGATA 1965
Query 2158 GCAGAGACCTTCAGGCATAAGGATAGCCTAGCAGCCGCAGAGAGCCCAGATGGTATGAAA 2217
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1966 GCAGAGACCTTCAGACATAAGGATAGCCTAGCAGCCGCAGAAAGCCCAGATGGTATGAAA 2025
Query 2218 GTATCCAATTCACATCTGACTGAAGAATCTGATGTTCTCTCTCCAAGGTTGAGTGATTGG 2277
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 GTATCCAATTCACATTTGACTGAAGAATCTGATGTTCTCTCTCCAAGGTTGAGTGATTGG 2085
Query 2278 TCGCGAAAAGGATCAGAAGACATGCTTGACTGTTTTC-CGGAGGCTGATAATTCAATTTT 2336
||||||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2086 TCGCGAAGAGGGTCAGAAGACATGCTTGACTGTTT-CACGGAGGCTGATAATTCAATTTT 2144
Query 2337 TATGGATGATCTGAGAGGTTTACCGCTAATGTCATGTAGAACCCGTTTTGGTCCCAAGTC 2396
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2145 TATGGATGATCTGAGAGGTTTACCATTAATGTCATGTAGAACCCGTTTTGGTCCCAAGTC 2204
Query 2397 TGATCAAGGTATGACAACTTCATCTGCCAGTAGCATGACTCCTAGATCCCCGATTCCGAC 2456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2205 TGATCAAGGTATGACAACTTCATCTGCCAGTAGCATGACTCCTAGATCCCCGATTCCGAC 2264
Query 2457 CCCTAGGCCTGATCCAATTGAACAGATATTAGGAGGCAAGGGTACATTCCACGATCAAGA 2516
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2265 CCCTAGGCCTGATCCAATTGAACATATATTAGGAGGCAAAGGTACATTCCACGATCAAGA 2324
Query 2517 TGATATTCCACAGATGAGTGAACTTGCTGACATTGCAAAATGTGCAGCAGATGCCATTCC 2576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2325 TGATATTCCACAGATGAGTGAACTTGCTGACATTGCAAAATGTGCAGCAGATGCCATTCC 2384
Query 2577 GGGTGATGATCAATCCATTCCATTCCTACTGTCTTGTCTTGAAGATCTAAGGGTTGTCAT 2636
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||
Sbjct 2385 GGGTGATGATCAATCCATTCCATTCTTACTTTCTTGTCTTGAAGATCTGAGGGTTGTTAT 2444
Query 2637 AGACCGCAGAAAGTTTGATGCACTTACAGTAGAAACATTTGGGACTCGCATAGAAAAGTT 2696
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2445 AGACCGCAGAAAGTTTGATGCACTTACAGTAGAAACTTTTGGGACTCGCATAGAAAAATT 2504
Query 2697 GATCCGTGAGAAATATGTGCATATGTGTGAGCTTATGGATGATGAAAAAGTTGATCTACT 2756
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2505 GATCCGGGAGAAATATCTGCATATGTGTGAGCTTATGGATGATGAAAAAGTTGATCTACT 2564
Query 2757 AAGCACTGTAATTGATGAAGATGCTCCCTTAGAAGATGATGTTGTTCGGAGCTTGAGGAC 2816
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2565 AAGCACTGTAATTGATGAAGATGCTCCCCTAGAAGATGATGTTGTTCGGAGCTTGAGGAC 2624
Query 2817 CAGCCCAGTACATCCGCGAGATCGCACATCCATTGATGATTTTGAGATCATAAAACCAAT 2876
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2625 CAGCCCGGTACATCCGCGAGACCGCACATCCATTGATGATTTTGAGATCATAAAACCAAT 2684
Query 2877 AAGTCGGGGAGCTTTTGGGCGAGtttttttAGCGAAAAAGAGGACAACAGGAGATCTATT 2936
||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2685 AAGCCGGGGAGCTTTTGGGCGAGTTTTTCTAGCGAAGAAGAGGACAACAGGAGATCTATT 2744
Query 2937 CGCAATCAAGGTTCTGAAAAAGGCAGATATGATTCGTAAGAATGCTGTTGAAAGTATACT 2996
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2745 TGCAATCAAGGTTCTGAAAAAGGCAGATATGATTCGTAAGAATGCTGTTGAAAGTATACT 2804
Query 2997 TGCTGAACGTGATATATTGATCAACGTTCGCAATCCTTTTGTGGTTCGTTTCTTCTATTC 3056
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2805 TGCTGAACGTGATATATTGATCAACGTTCGCAATCCCTTTGTGGTTCGTTTCTTCTATTC 2864
Query 3057 TTTCACGTGTCGTGACAACCTGTATTTGGTGATGGAGTATCTGAATGGAGGGGATCTGTA 3116
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 2865 TTTCACGTGTCGTGACAACCTGTATCTGGTGATGGAGTATCTGAATGGAGGGGACCTGTA 2924
Query 3117 TTCGTTGTTGAGAAATTTAGGTTGCTTAGAAGAAGATATTGTCCGTGTATATATTGCTGA 3176
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2925 TTCGTTGTTGAGAAATTTAGGTTGCTTAGAGGAAGATATTGTCCGTGTATATATTGCTGA 2984
Query 3177 AGTTGTCCTTGCTTTGGAATATTTGCATTCTGAGGGTGTTGTTCACCGTGATTTGAAGCC 3236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2985 AGTTGTCCTTGCTTTGGAATATTTGCATTCTGAGGGTGTTGTTCACCGTGATTTGAAGCC 3044
Query 3237 GGATAATTTGTTGATTGCGCATGATGGTCATATAAAGTTAACAGATTTCGGGCTCTCTAA 3296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3045 AGATAATTTGTTGATTGCGCATGATGGTCATATAAAGTTAACAGATTTCGGGCTCTCTAA 3104
Query 3297 AGTTGGTCTCATCAACAGCACAGATGATCTGGCTGGTCCTGCTGTAAGTGGGACGTCTCT 3356
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3105 AGTTGGTCTCATCAACAGCACGGATGATCTGGCTGGTCCTGCTGTAAGTGGGACGTCTCT 3164
Query 3357 GCTTGATGAGGAGGAATCACGATTAGCGGCATCTGAGGAACAACTTGAAAGGCGCAAGAA 3416
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3165 GCTTGATGAGGAGGATTCACGATTAGCGGCAACTGAGGAACAACTTGAAAGGCGCAAGAA 3224
Query 3417 ACGGTCTGCTGTGGGTACTCCTGACTACTTAGCGCCAGAAATTCTTTTAGGGACAGGACA 3476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3225 ACGGTCTGCTGTGGGTACTCCTGATTACTTAGCGCCAGAAATTCTTTTAGGGACAGGACA 3284
Query 3477 TGGTGCAACTGCGGATTGGTGGTCTGTTGGCATCATTCTGTTTGAACTCATTGTGGGAAT 3536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3285 TGGTGCAACTGCGGATTGGTGGTCTGTTGGCATCATTCTGTTTGAACTCATTGTGGGAAT 3344
Query 3537 TCCACCCTTCAATGCGGAACATCCTCAGCAAATATTTGATAATATTCTCAACCGTAAGAT 3596
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3345 TCCACCCTTCAATGCGGAACATCCTCAGCAAATATTTGACAATATTCTCAACCGTAAGAT 3404
Query 3597 ACCATGGCCTCATGTTCCAGAAGAAATGAGTGCTGAAGCCCATGATATAATAGACCGATT 3656
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 3405 ACCATGGCCTCATGTTCCAGAAGAAATGAGTGCTGAAGCTCATGATATTATTGACCGATT 3464
Query 3657 TTTAACAGAAGATCCACATCAGAGACTTGGAGCTAGAGGGGCAGCTGAGGTCAAGCAGCA 3716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3465 TTTAACAGAAGATCCACATCAGAGACTTGGAGCTAGAGGGGCAGCTGAGGTCAAGCAGCA 3524
Query 3717 CATCTTCTTTAAAGACATCAACTGGGACACACTAGCAAGGCAAAAGGCTGCATTTGTTCC 3776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3525 CATCTTCTTTAAAGACATCAACTGGGACACACTAGCAAGGCAAAAGGCTGCATTTGTTCC 3584
Query 3777 GGCTTCAGAGAGTGCAATTGACACAAGTTACTTCAGAAGTCGCTACTCGTGGAACACATC 3836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3585 GGCTTCAGAGAGTGCAATTGACACAAGTTACTTCAGAAGTCGCTACTCGTGGAACACATC 3644
Query 3837 AGATGAGCAATTTTTCCCAAGCGGTGAGGTTCCAGATTATAGTGATGCTGATAGCAT-GA 3895
|||||||||||||||||| ||||||||||||| |||||||| |||||||| |||| | ||
Sbjct 3645 AGATGAGCAATTTTTCCCGAGCGGTGAGGTTCAAGATTATATTGATGCTGGTAGC-TCGA 3703
Query 3896 CTAACAGCAGTGGTTGCTCGAGCAATCATCATGAAGAAGGGGAG 3939
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3704 CTGGCAGCAGTGGTTGCTCGAGCAATCATCATGAAGAAGGGGAG 3747
Score = 281 bits (152), Expect = 2e-74
Identities = 162/167 (97%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 3938 AGGCTGAAGAATGCGAAGGTCATGCAGAGTTTGAGTCTGGCATACCTGTAGATTACTCTT 3997
||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 3818 AGGCTGAAGAATGTGAAGGACATGCAGAGTTTGAGTCTGGCGTACCTGTAGATTACTCTT 3877
Query 3998 TCAGTAATTTCTCGTTTAAGAACCTCTCTCAGTTGGCGTCTATCAACTATGATCTTTTAT 4057
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 3878 TCAGTAATTTCTCGTTTAAGAACCTCTCTCAGTTGGCGTCTATCAACTACGATCTTCTAT 3937
Query 4058 CCAAAGGCTGGAAAGATGAGCCACAACAAATTCCGCATCACAAGTAA 4104
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3938 CCAAAGGCTGGAAAGATGAGCCACAACAAATTCCGCATCACAAGTAA 3984
> Ahg336969 jgi|Araly1|336969|fgenesh1_pg.C_scaffold_1003534
Length=3780
Score = 2630 bits (1424), Expect = 0.0
Identities = 2535/3053 (83%), Gaps = 149/3053 (5%)
Strand=Plus/Plus
Query 955 TCTGGCCCTCTAAGAAATTCAGACTTTTGCACCCCAGAGAATTCATATGAATGGGAAAAT 1014
||||||||| || ||| ||||| ||||||||| ||||||||||||||||| |||| ||
Sbjct 634 TCTGGCCCTGTAGGAAGCTCAGAAGTTTGCACCCTAGAGAATTCATATGAATTGGAAGAT 693
Query 1015 CCCAAAGAGTCAGAATCGCCTCGTTATCAAGCCTTACTTCGTATGACCAGTGCTCCACGA 1074
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 694 CCAAAAGAGTCAGAATCGCCTCGTTATCAAGCTTTACTTCGTATGACCAGTGCTCCAAGA 753
Query 1075 AAGAGGTTTCCTGGTGACATCAAAAGCTTTTCTCATGAGTTGAACTCAAAAGGTGTACGT 1134
||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| || ||
Sbjct 754 AAGAGGTTTCCTGGTGACATCAAGAGCTTTTCTCATGAGCTGAACTCGAAAGGGGTTCGG 813
Query 1135 CCCTTTCCATTATGGAAGCCTCGTAGGTCGAACAA-TGTGGAGGAAGTATTGAATCTGAT 1193
|| |||||||||||||||||||||||||| || || | |||||||| | |||||||| ||
Sbjct 814 CCTTTTCCATTATGGAAGCCTCGTAGGTCAAATAACT-TGGAGGAAATCTTGAATCTAAT 872
Query 1194 TCGGGCAAAATTTGAGAAAGCAAAGGAAGAAGTAAACTCTGACCTTGCAGTATTT-GCAG 1252
||| | |||||||| |||||||||||||||||||| || |||||| | |||| | |
Sbjct 873 TCGAACCAAATTTGATAAAGCAAAGGAAGAAGTAAATTCGGACCTTTTTGCATTTAG-TG 931
Query 1253 CGGACCTGGTGGGAGT-TCT-TGAGAAAAATGCAGAAAGCCATCCTGAGTGGGAGGAAAC 1310
||| || || ||| | | | ||| ||||| |||||| |||||||||| | ||||||
Sbjct 932 GGGATCT-GTTGGA-TATTTATGATAAAAACAAAGAAAGTCATCCTGAGTTGCTGGAAAC 989
Query 1311 ATTTGAAGACTTGCTAATTTTGGCTCGA-AGTTGTGCTATGACTACTCCTGGAGATTTCT 1369
| ||||||||||| | ||||||| || | |||||||| ||||||| | ||||| ||||
Sbjct 990 AATTGAAGACTTGTTGGTTTTGGC-AGAGACTTGTGCTAAGACTACTTCGGGAGAGTTCT 1048
Query 1370 GGCTTCAGTGTGAAGGCATTGTTCAGGACTTAGATGATAGACGTCAAGAGCTTCCCCCGG 1429
||||||||||||| ||||| || || ||||||||||||||||||||||||||||| ||||
Sbjct 1049 GGCTTCAGTGTGAGGGCATAGTACAAGACTTAGATGATAGACGTCAAGAGCTTCCTCCGG 1108
Query 1430 GCGTCCTCAAGCAGCTTCATACTCGGATGCTTTTTATCCTTACCAGATGTACTAGATTAC 1489
|||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1109 GCGTGCTCAAGCAACTTCACACTCGGATGCTTTTTATCCTTACCAGATGTACCAGATTAC 1168
Query 1490 TTCAGTTTCATAAGGAAAGCTGGGGGGAGGAGGAACAAG-TTGTACAACTACGTCAGTCA 1548
||||||||||||||||||| |||||| |||||||| | | | |||||||||||||||||
Sbjct 1169 TTCAGTTTCATAAGGAAAGTTGGGGGCAGGAGGAAGATGCCT-TACAACTACGTCAGTCA 1227
Query 1549 AGAGTCTTGCATTCTATAGAGAAAATA--CCGC-C----G-AG-T--GGAGCGGGA-AGG 1596
||||||||||||||| || |||| | || | | | || | ||| ||||| ||
Sbjct 1228 AGAGTCTTGCATTCTGCCGATAAAAGAGTCCCCACTGGAGAAGTTAGGGA-CGGGAGCGG 1286
Query 1597 ----AGT--TAC-AGTG-CTGCAAAGGTACCATCTACCAAGAAAGCTTATAGTCAGGAGC 1648
||| | | | || || |||||| |||||| |||||||||||||||||||||||||
Sbjct 1287 TTCAAGTACTGCTAATGCCT-CAAAGGCACCATCCACCAAGAAAGCTTATAGTCAGGAGC 1345
Query 1649 AGCATGGTTTGGACTGGAAGGAAGACGCTGTTGTACGCT-CAGTTCC-CCCTCTTGCTCC 1706
||| ||||||| | ||||| || | | |||||| || | ||| ||| | ||||| ||||
Sbjct 1346 AGCGTGGTTTGAATTGGAACGAGGGCTTTGTTGTTCG-TCCAGCTCCTCTCTCTT-CTCC 1403
Query 1707 -TCCTGAAA-ATTATGCTATAAAGGAATCTGAATCTCCTGCAAACATTGATAGAATGTCT 1764
| | ||| | ||| | |||||| |||||||| ||||||||||| |||| |||||||
Sbjct 1404 GTAC--AAAGA-AATG-T-CAAAGGATTCTGAATCGCCTGCAAACATCGATAAAATGTCT 1458
Query 1765 TCCTGGAAAAAACTTCCATCTCCAGCACT-GAAAACTGTGA-AAGAAGC-GCCAGCGTC- 1820
|| ||||||| |||||||||||| ||| | ||| ||| | ||||||| | ||| ||
Sbjct 1459 TCTTGGAAAAGACTTCCATCTCCGGCA-TCGAAGGGTGT-ACAAGAAGCTG-CAGTATCT 1515
Query 1821 AGAAGAGCAGAATGATAGCAAAGTTGAACCTCCAAATATAGTT-GGGAGTCGACAAG--G 1877
| |||||||||||||||||||||||||||||||| | ||||| || | | ||
Sbjct 1516 A-AAGAGCAGAATGATAGCAAAGTTGAACCTCCACAGGTAGTTAAAAAG-CTAGTAGCTA 1573
Query 1878 T-AGGGATGATGCCGCTGTTGC-TA-TT-CTCA-AC-TTTCCTCCAGCAAAAGAT-TCTC 1930
| || |||||| |||||||| | || | || || |||| ||| |||||| | || |
Sbjct 1574 TAAGTGATGATATGGCTGTTGCGAAGTTGC-CAGACGTTTCTTCC-GCAAAA-TTGTCCC 1630
Query 1931 ATGAACA-CTCCTCCAAGCATCGGCACAATATTTCTTGGGGTTACTGGGGGGAACAACCC 1989
| ||||| | | ||||| ||||||||||||||||||||||||| |||||||| | | |
Sbjct 1631 AGGAACATATGC-CCAAGAATCGGCACAATATTTCTTGGGGTTATTGGGGGGATC-AGTC 1688
Query 1990 CT-TATTTCGGAGGAAAGTTCAATAATGTGCCGTATCTGTGAGGAGGAAGTTCCGACAAC 2048
| ||| || |||||||||||||| || |||||||| || ||||||||| |||| || ||
Sbjct 1689 ATGTATCTCTGAGGAAAGTTCAATTATTTGCCGTATATGCGAGGAGGAAATTCCCACCAC 1748
Query 2049 TCATGTGGAAGATCACTCTAGGGTTTGTACATTGGCTGATAAATATGACCAGAAA-GGAC 2107
|||||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||
Sbjct 1749 CCATGTGGAAGATCACTCTAGAATTTGTGCATTGGCTGATAAATATGACCA-AAAGGGTG 1807
Query 2108 TGAGTGTTGATGAGCGACTGATGGCAGTTGCTGGT-ACACTTGACAAGATAGCAGAGACC 2166
|||||||||| ||||| ||| ||||||||||| || || ||||| |||||| |||||| |
Sbjct 1808 TGAGTGTTGACGAGCGGCTGGTGGCAGTTGCT-GTAACTCTTGAAAAGATAACAGAGAAC 1866
Query 2167 TTCAGGCATAAGGATAGCCTAGCAGCCGCAGAGAGCCCAGATGGTATGAAAGTATCCAAT 2226
|||| || ||||||||||||||||| | ||| |||||||||||||||||| |||| ||
Sbjct 1867 TTCATACAAAAGGATAGCCTAGCAGCAGTAGAAAGCCCAGATGGTATGAAAATATCTAA- 1925
Query 2227 TCAC-ATC-TGACTGAAGAATC-TGATGTTCTCTCTCCAAGGTTGAGTGATTGGTCGCGA 2283
| | | | |||| |||||| | |||||||||||| |||| | | |||||||||||||||
Sbjct 1926 -CGCGAGCTTGACCGAAGAA-CTTGATGTTCTCTCCCCAAAGCTAAGTGATTGGTCGCGA 1983
Query 2284 AAAGGATCAGAAGACATGCTTGACTGTTTTCCGGAGGCTGATAATTCAATTTTTATGGAT 2343
| ||| || || |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1984 AGAGGGTCGGAGGACATGCTTGACTGTTTTCCGGAGGCTGATAATTCAGTTTTCATGGAT 2043
Query 2344 GATCTGAGAGGTTTACCG-CTAATGTCATGTAGAACCCGTTTTGGTCCCAAGTCTGATCA 2402
||| ||||| ||||||| | ||||||||| ||||| |||||||||||||||||||||||
Sbjct 2044 GATATGAGATGTTTACCTTC-AATGTCATGCAGAACTCGTTTTGGTCCCAAGTCTGATCA 2102
Query 2403 AGGTATGACAACTTCATCTGCCAGTAGCATGACTCCTAGATCCCCGATTCCGACCCCTAG 2462
||| ||||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 2103 AGGCATGACTACTTCATCTGCCGGTAGCATGACTCCTAGATCCCCTATTCCAACCCCTAG 2162
Query 2463 GCCTGATCCAATTGAACAGATATTAGGAGGCAAGGGTACATTCCACGATCAAGATGATAT 2522
|| |||||| ||||| | ||||||||||||||||||||||||| || || |||||| |
Sbjct 2163 ACCCGATCCAGTTGAATTGTTATTAGGAGGCAAGGGTACATTCCATGACCAGGATGAT-T 2221
Query 2523 TC-CACAGATGAGTGAACTTGCTGACATTGCAAAATGTGCAGCAGATGCCATTCCGGGTG 2581
|| | |||||||||||||||||||||||||||| ||| |||||| || ||||||| | ||
Sbjct 2222 TCTCTCAGATGAGTGAACTTGCTGACATTGCAAGATGCGCAGCAAATCCCATTCCAGTTG 2281
Query 2582 ATGATCAATCCATTC--CATTCCTACTGTCTTGTCTTGAAGATCTA-AGGGTTGTCATAG 2638
|||||||||| |||| | || |||| |||||||||||||| || || |||||||| |
Sbjct 2282 ATGATCAATCTATTCAGCTTT--TACTTTCTTGTCTTGAAGA-CTTGAGAGTTGTCATTG 2338
Query 2639 ACCGCAGAAAGTTTGATGCACTTACAGTAGAAACATTTGGGACTCGCATAGAAAAGTTGA 2698
|||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||||
Sbjct 2339 ACCGCAGAAAGTTTGATGCACTTATAGTAGAAACTTTTGGAACACGCATAGAAAAGTTGA 2398
Query 2699 TCC-GTGAGAAA-TATGTGCATATGTGTGAGCTTATGGATGATGAAAAAGTTGATCTACT 2756
| | | || ||| ||| | || |||| |||||||||||||||||||||| | | ||
Sbjct 2399 TACAG-GA-AAAGTATCTTCAGCTGTGCGAGCTTATGGATGATGAAAAAG--G-T--AC- 2450
Query 2757 AAGCACTGTAATTGATGAAGATGCTCCCTTAGAAGATGATGTTGTTCGGAGCTTGAGGAC 2816
|| || | |||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 2451 ---CA-TG-A-TTGATGAAGATGCTCCTTTGGAAGATGATGTTGTTCGCAGCTTGAGGAC 2504
Query 2817 CAGCCCAGTACATCCGCGAGATCGCACATCCATTGATGATTTTGAGATCATAAA-ACCAA 2875
||| |||||||||| ||| || |||| |||||| |||||||||||| ||| | || ||
Sbjct 2505 CAGTCCAGTACATCTGCGGGACCGCATATCCATAGATGATTTTGAGCTCAGGGAGAC-AA 2563
Query 2876 TAAGTCGGGGAGCTTTTGGGCGA-GtttttttAGCGAAAAAGAGGACAACAGGAGATCTA 2934
| ||| ||||||||||||||| | ||| | || || |||| || |||||||| |||
Sbjct 2564 TTAGTAGGGGAGCTTTTGGGC-ATGTTATCTTGGCTCGTAAGAACACTACAGGAGACCTA 2622
Query 2935 TTCGCAATCAAGGTTCTGAAAAAGGCAGATATGATTCGTAAGAATGCTGTTGAAAGTATA 2994
|| ||||| |||||||||| |||||||||||||| || ||||||||||| |||||||||
Sbjct 2623 TTTGCAATTAAGGTTCTGAGGAAGGCAGATATGATCCGCAAGAATGCTGTGGAAAGTATA 2682
Query 2995 CTTGCTGAACGTGATATATTGATCAACGTTCGCAATCCTTTTGTGGTTCGTTTCTTCTAT 3054
||||||||||| ||||| |||||||||| |||||||| ||||||||||| |||||||||
Sbjct 2683 CTTGCTGAACGAGATATTTTGATCAACGCCCGCAATCCCTTTGTGGTTCGATTCTTCTAT 2742
Query 3055 TCTTTCACGTGTCGTGACAACCTGTAT-TTGGTGATGGAGTATCTGAATGGAGGGGATCT 3113
||||| || ||| | || ||||||||| ||| ||||||| || || |||||||||||| |
Sbjct 2743 TCTTTTACTTGTAGCGAAAACCTGTATCTTG-TGATGGAATACCTCAATGGAGGGGATTT 2801
Query 3114 GTATTCGTTGTTGAGAAATTTAGGTTGCTTAGAAGAAGA-TATTGTCCGTGTATATATTG 3172
||||| |||||||||| ||||||||||| || ||| | || || ||||||||| ||||
Sbjct 2802 TTATTCAATGTTGAGAAAATTAGGTTGCTTGGATGAA-ACTAATGCCCGTGTATACATTG 2860
Query 3173 CTGAAGTTGTCCTTGCTTTGGAATATTTGCATTCTGAGGGTGTTGTTCACCGTGATTTGA 3232
| |||||||||||||||||||||||||| || |||||||||||||| || ||||||||||
Sbjct 2861 CAGAAGTTGTCCTTGCTTTGGAATATTTACACTCTGAGGGTGTTGTGCATCGTGATTTGA 2920
Query 3233 AGCCGGATAATTTGTTGATTGCGCATGATGGTCATATAAAGTTAACAGATTTCGGGCTCT 3292
|||| || |||||||||||||| |||||||||||| | ||||| |||||||| ||||| |
Sbjct 2921 AGCCTGACAATTTGTTGATTGCACATGATGGTCATGTTAAGTTGACAGATTTTGGGCTTT 2980
Query 3293 CTAAAGTTGGTCTCATCAACAGCACAGATGATCTGGCTGGTCCTGCTGTA-AGTGG-GAC 3350
| ||||||||||||||||||||||| |||||||| ||||||| | | | |||| |
Sbjct 2981 CAAAAGTTGGTCTCATCAACAGCACCGATGATCTCTCTGGTCCAGTT-TCCAGTGCAGT- 3038
Query 3351 GTCTCTGCTTGATGAGGAGGAATCACGATTAGCGGCATCTGAGGAACAACTTGAAAGGCG 3410
||| ||||||| ||||||| || || ||| || | || || ||| || |
Sbjct 3039 GTCGCTGCTTGTTGAGGAGAAACCAAAATT-GC--C----GA----CA--TTG---GG-G 3081
Query 3411 CAAGAAACGGTCTGCTGTGGGTACTCCTGACTACTTAGCGCCAGAAATTCTTTTAGGGAC 3470
|| || |||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 3082 CAT-AAGCGGTCTGCAGTGGGCACTCCTGACTACTTAGCGCCAGAAATTCTTTTGGGGAC 3140
Query 3471 AGGACATGGTGCAACTGCGGATTGGTGGTCTGTTGGCATCATTCTGTTTGAACTCATTGT 3530
||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 3141 AGGACATGGTGCAACTGCGGATTGGTGGTCTGTTGGCATCATTTTGTATGAATTCATTGT 3200
Query 3531 GGGAATTCCACCCTTCAATGCGGAACATCCTCAGCAAATATTTGATAATATTCTCAACCG 3590
||| ||||| ||||||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct 3201 GGGGATTCCGCCCTTCAATGCTGACCATCCTCAGCAAATCTTTGACAATATTCTCAACCG 3260
Query 3591 TAAGATACCATGGCCTCATGTTCCAGAAGAAATGAGTGC-TGAAGCCCATGATATAATAG 3649
|| |||| |||||||| |||||| ||||| ||||| | |||||||| |||| | ||||
Sbjct 3261 AAATATACAATGGCCTCCTGTTCCTGAAGATATGAGC-CATGAAGCCCGTGATTTGATAG 3319
Query 3650 ACCGATTTTTAACAGAAGATCCACATCAGAGACTTGGAGCTAGAGGGGCAGCTGAGGTCA 3709
| || || |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 3320 ATCGGTTATTAACAGAAGATCCCCATCAGAGACTTGGAGCTAGAGGGGCGGCTGAGGTCA 3379
Query 3710 AGCAGCACATCTTCTTTAAAGACATCAACTGGGACACACTAGCA-AGGCAAAAGGCTGCA 3768
||||||||||||||||||||||||| |||||| |||| |||||| | || |||||||||
Sbjct 3380 AGCAGCACATCTTCTTTAAAGACATAAACTGGAACACTCTAGCACAA-CAGAAGGCTGCA 3438
Query 3769 TTTGTTCCGGCTTCAGAGAGTGCAATTGACACAAGTTACTTC-AGAAGTCGCTACTCGTG 3827
||||| |||| |||||| | ||| ||||||||||||||||| ||| |||||||||||||
Sbjct 3439 TTTGTGCCGGATTCAGAAAATGCTTTTGACACAAGTTACTTCCAGA-GTCGCTACTCGTG 3497
Query 3828 GAACACAT-CAGATGAGCAAT-TTTTCC-CAAGCGGTGAGGTTCCAGATTATAGTGATGC 3884
|||| || | |||||||||| |||||| | | |||| | ||||| |||||| |
Sbjct 3498 GAACT-ATTCGGATGAGCAATGTTTTCCTCC--CAATGAGAATGAAGATTGTAGTGACGG 3554
Query 3885 TGATAGCATGACTAACAGCAGTGGTTGCTCGAGCAATCATCATGAAGAAGGGG 3937
||| ||| ||| | ||| |||||| ||| ||||||||||| || || ||||
Sbjct 3555 TGACAGCTTGAGTGGCAGTAGTGGTCGCTTAAGCAATCATCACGACGAGGGGG 3607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160831303498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5