BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17860.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479270 jgi|Araly1|479270|fgenesh2_kg.3__1971__AT3G17860.1 1578 0.0
> Ahg479270 jgi|Araly1|479270|fgenesh2_kg.3__1971__AT3G17860.1
Length=1329
Score = 1578 bits (854), Expect = 0.0
Identities = 947/991 (96%), Gaps = 10/991 (1%)
Strand=Plus/Plus
Query 1 GCGATTTGTTAATAAAACTAGAAATTGCGGTGAATTAACTTCATTCCACGTTTTTTCATT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GCGATTTGTTAATAAAACTAGAAATTTCGGTGAATTAACTTCATTCCACGTTTTTTCATT 60
Query 61 TTCTCCCTCAAAAGTCTCTGttttttttcctttttCCGGCGAAGCTCTATTTAGCTTGAT 120
|||| |||||||||||||||||| ||| |||||||||||||||||| || ||||||||||
Sbjct 61 TTCT-CCTCAAAAGTCTCTGTTTATTTCCCTTTTTCCGGCGAAGCTATA-TTAGCTTGAT 118
Query 121 TCCGGCGTTTAACACGCGTTTTAATCGAAAC-AGACATTTGAGATCGAATTAATTTTGTA 179
| |||||||||||||||| |||||||| || ||| ||||||||||||||| || |||||
Sbjct 119 TTCGGCGTTTAACACGCG-TTTAATCG--ACGAGAGATTTGAGATCGAATT-ATATTGTA 174
Query 180 GCG-GGCTGT-GTCTTTATTATAGATGGAGAGAGATTTTCTCGGGTTGGGTTCGAAAAAT 237
|| | ||| || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ACGTTG-TGTGGTGTTTAATATAGATGGAGAGAGATTTTCTCGGGTTGGGTTCGAAAAAT 233
Query 238 TCTCCGATCACTGTCAAGGAGGAAACCAGCGAAAGCTCTAGAGATTCAGCTCCCAACAGA 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 234 TCTCCGATCACTGTCAAGGAGGAAACCAGCGAAAGCTCTAGAGATTCAGCTCCCAATAGA 293
Query 298 GGAATGAACTGGTCTTTCTCAAACAAAGTATCAGCTTCTTCTTCTCAGTTTCTATCCTTC 357
|||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 294 GGAATGAATTGGTCGTTCTCAAACAAAGTATCTGCTGCTTCTTCTCAGTTTCTATCTTTC 353
Query 358 AGGCCAACTCAAGAAGATAGACATAGAAAGTCTGGAAATTATCATCTTCCTCACTCTGGT 417
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 354 AGGCCATCTCAAGAAGATAGACATAGAAAGTCTGGAAATTATCATCTGCCTCACTCTGGT 413
Query 418 TCCTTCATGCCATCATCAGTAGCTGATGTTTATGATTCAACCCGCAAAGCTCCTTACAGT 477
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 414 TCCTTCATGCCATCATCAGTAGCTGATGTATATGATTCAAACCGCAAAGCTCCTTACAGT 473
Query 478 TCTGTACAGGGAGTGAGGATGTTCCCTAATTCCAATCAACACGAAGAAACTAACGCAGTT 537
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 474 ACTGTACAGGGAGTGAGGATGTTCCCTAATTCCAATCAACACGAAGACACTAACGCAGTT 533
Query 538 TCCATGTCGATGCCGGGTTTCCAGTCTCATCATTATGCACCAGGAGGAAGAAGCTTCATG 597
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TCCATGTCCATGCCGGGTTTCCAGTCTCATCATTATGCACCAGGAGGAAGAAGCTTCATG 593
Query 598 AACAATAACAATAACTCACAACCTTTGGTAGGAGTTCCTATCATGGCACCTCCAATTTCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 594 AACAATAACAATAACTCACAACCTTTGGTAGGAGTTCCTATCATGGCACCTCCTATTTCA 653
Query 658 ATCCTTCCTCCTCCAGGTTCCATTGTAGGGACTACTGATATTAGATCTTCTTCCAAGCCA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 ATCCTTCCTCCTCCAGGTTCCATTGTAGGGACTACTGATATTAGATCTTCTTCCAAGCCA 713
Query 718 ATAGGTTCACCTGCGCAGTTGACGATCTTTTATGCCGGTTCAGTTTGTGTTTACGATGAC 777
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 ATAGGGTCACCTGCGCAGTTGACGATCTTTTATGCCGGTTCAGTTTGTGTTTACGATGAC 773
Query 778 ATATCTCCTGAAAAGGCAAAGGCGATAATGTTGCTAGCTGGGAACGGTTCCTCTATGCCT 837
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 774 ATATCTCCTGATAAGGCAAAAGCGATAATGTTGCTAGCTGGGAACGGTTCCTCTATGCCT 833
Query 838 CAAGTCTTTTCGCCGCCTCAAACTCATCAACAAGTGGTCCATCATACTCGTGCCTCTGTC 897
| || |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 834 CGAGCCTTTTCACCGCCTCAAACTCATCAACAAGTGGTCCATCATGCTCGTGCCTCTGTC 893
Query 898 GATTCTTCAGCTATGCCTCCTAGCTTCATGCCTACAATATCTTATCTTAGCCCTGAAGCT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GATTCTTCAGCTATGCCTCCTAGCTTCATGCCTACAATATCTTATCTTAGCCCTGAAGCT 953
Query 958 GGAAGTAGCACAAACGGACTCGGAGCCACAA 988
||||||||||||||||||||| |||| ||||
Sbjct 954 GGAAGTAGCACAAACGGACTCAGAGCAACAA 984
Score = 484 bits (262), Expect = 6e-136
Identities = 286/298 (96%), Gaps = 0/298 (0%)
Strand=Plus/Plus
Query 1053 CCCAGTACCAGTTTCTTGTTCTACCAATGTAATGGCTCCAACAGTGGCATTACCTCTGGC 1112
||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1001 CCCAGTAGCAGTTCCTTGTTCTACCAATGTAATAGCTCCAACAGTGGCTTTACCTCTGGC 1060
Query 1113 TCGCAAAGCATCCCTGGCTAGGTTTTTAGAGAAACGCAAAGAAAGGGTCACGAGCGTATC 1172
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TCGCAAAGCATCTCTGGCTAGGTTTTTAGAGAAACGCAAAGAAAGGGTCACGAGCGTATC 1120
Query 1173 CCCATATTGCTTAGACAAGAAGTCATCGACAGATTGTCGCAGATCAATGTCTGAATGCAT 1232
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1121 GCCATATTGCTTAGACAAGAAGTCATCGACAGATTGTCGCAGATCAATATCAGAATGCAT 1180
Query 1233 TAGTTCTTCTCTCAGCTCTGCAACCTAATTTCATCTACAGTAAGAAGGTTGCTTTAGACC 1292
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1181 TAGTTCTTCTCTCAGCTCTGCAACCTAATTTCATCTAAAGTAAGAAGGCTGCTTTAGACC 1240
Query 1293 ACTCCACATCCATATTTGCATTTCAATGGCGGTCTTTTCAATGTCTCAGTTAATTTTT 1350
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1241 ACTCCACATCCATATTTGCATTTCAACGGCGGTCTTTTCAATTTCTCAGTTAATTTTT 1298
Score = 60.2 bits (32), Expect = 4e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1382 TTTATATATACGATAGTGTATACTTTGTTTAC 1413
||||||||||||||||||||||||||||||||
Sbjct 1298 TTTATATATACGATAGTGTATACTTTGTTTAC 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5