BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17880.1
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479273 jgi|Araly1|479273|fgenesh2_kg.3__1974__AT3G17880.1 1818 0.0
> Ahg479273 jgi|Araly1|479273|fgenesh2_kg.3__1974__AT3G17880.1
Length=1188
Score = 1818 bits (984), Expect = 0.0
Identities = 1115/1179 (95%), Gaps = 6/1179 (1%)
Strand=Plus/Plus
Query 107 AAGAAAAAGGCGGAATTCGATGGTGGATGCGATTCAAGTAGCTGAGCTGAGAAGATTCGT 166
||| ||||||| || ||||||||||||||||| ||| ||||||||||| ||||||||| |
Sbjct 13 AAGGAAAAGGCAGACTTCGATGGTGGATGCGAATCAGGTAGCTGAGCTTAGAAGATTCAT 72
Query 167 CGAGCAGTTGAAATTGAATCCTTCGATTCTCCACGATCCTAGTCTGGTTTTCTTCAAAGA 226
|||||||||||||| ||||||||||||||| ||||| ||| ||||| |||||||||||||
Sbjct 73 CGAGCAGTTGAAATCGAATCCTTCGATTCTGCACGACCCTTGTCTGATTTTCTTCAAAGA 132
Query 227 ATATCTCCGAAGTTTAGGAGCTCAAGTTCCGAAGATTGAGAAAACTGAAAGAGATTATGA 286
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 133 ATATCTCCGAAGTTTAGGGGCTCAAGTTCCGAAGATTGAGCAAACTGAAAGAGATTATGA 192
Query 287 AGATAA-GGCTGAGACAAAACCCAGTTTCTCTCCTAAACatgatgatgatgatgatgatA 345
||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 193 AGA-AAGGGCAGAGACAAAACCCAGTTTCTCTCCTAAACATGCTGATGATGATGATGATA 251
Query 346 TTATGGAGTCTGATGTTGAACTCGACAACT-CTGATGTAGTTGAACCAGACAATGAGCCT 404
|||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||
Sbjct 252 TTATGGAGTCTGATGTTGAACTGGACAA-TGCTGATGTAGTTGAACCTGACAATGAGCCT 310
Query 405 CCTCAGCCGATGGGAGACCCTACTGCTGAAGTGACCGATGAAAATAGGGATGATGCTCAG 464
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 311 CCTCAGCCGATGGGAGATCCTACTGCTGAAGTGACCGATGATAATAGGGATGATGCTCAG 370
Query 465 TCAGAGAAGAGCAAAGCTATGGAGGCAATCTCTGATGGGAGGTTTGACGAAGCTATAGAG 524
| |||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||
Sbjct 371 TTAGAGAAGAGCAAAGCTGTGGAGGAAATCTCTGATGGGAAGTTTGACGAAGCTATAGAG 430
Query 525 CATCTAACAAAAGCTGTCATGCTAAATCCTACTTCAGCGATTCTCTACGCCACTAGAGCT 584
|||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 431 CATCTAACAAAAGCCGTCATGCTAAACCCTACTTCAGCAATCCTCTACGCCACTAGAGCT 490
Query 585 AGTGTGTTTTTAAAAGTTAAGAAGCCAAATGCTGCAATTCGTGATGCCAACGTAGCGTTA 644
| |||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 491 ACCGTGTTTCTAAAAGTTAAGAAGCCAAATGCTGCAATTCGCGATGCCAACGTGGCGCTA 550
Query 645 CAGTTCAACTCTGATTCAGCTAAGGGGTACAAATCACGAGGTATGGCTAAGGCCATGTTA 704
||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 551 CAGTTCAACCCTGATTCAGCTAAGGGGTACAAGTCACGAGGTATGGCTAGGGCCATGTTA 610
Query 705 GGCCAATGGGAAGAGGCTGCAGCTGATCTACATGTCGCATCAAAATTAGATTACGATGAG 764
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 611 GGCCAATGGGAAGATGCTGCAGCTGACCTACATGTAGCATCAAAATTAGATTACGATGAG 670
Query 765 GAGATAGGGACAATGCTTAAGAAGGTTGAACCCAATGCAAAGAGAATCGAAGAACACCGC 824
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GAGATAGGGACGATGCTTAAGAAGGTTGAACCCAATGCAAAGAGAATCGAAGAACACCGC 730
Query 825 AGGAAATACCAACGCCTGAGGAAAGAAAAGGAGCTCCAAAGGGCTGAACGCGAGAGACGG 884
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 731 AGGAAATATCAACGCCTGAGGAAAGAAAAGGAGCTCCAAAGGGCTGAACGCGAGAGAC-G 789
Query 885 A-AACAGCAAGAAGCCCAGGAGCGAGAAGCTCAGGCTGCACTCAATGACGGAGAAGTGAT 943
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 790 ACAACAGCAAGAAGCCCAGGAGCGAGAAGCTCAGGCTGCACTCAATGACGGACAAGTGAT 849
Query 944 TAGCATCCACTCAACAAGCGAGCTAGAAGCAAAGACAAAGGCTGCTAAGAAGGCATCACG 1003
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||
Sbjct 850 TAGCATCCACTCAACAAGCGAGCTAGAAGCTAAGACAAAGGCCGCAAAGAAGGCATCGCG 909
Query 1004 TCTGCTCATCCTTTACTTCACAGCCACATGGTGTGGGCCATGCCGATATATGTCTCCTCT 1063
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 910 TCTGCTCATCCTTTACTTCACAGCCACATGGTGTGGACCGTGCCGTTATATGTCTCCTCT 969
Query 1064 GTACTCAAACCTGGCCACACAGCACTCGAGAGTCGTTTTCTTGAAAGTTGATATAGACAA 1123
||||||||||||||||||||||||| | |||||||||||| |||||||||| |||||| |
Sbjct 970 GTACTCAAACCTGGCCACACAGCACCCAAGAGTCGTTTTCCTGAAAGTTGACATAGACGA 1029
Query 1124 GGCCAATGACGTGGCTGCTTCTTGGAACATTAGCAGCGTCCCGACCTTTTGCTTCATCAG 1183
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GGCCAACGACGTGGCTGCTTCTTGGAACATTAGCAGCGTCCCGACCTTTTGCTTCATCAG 1089
Query 1184 AGATGGCAAAGAGGTGGACAAAGTTGTCGGAGCTGATAAAGGTTCGCTTGAGCAGAAGAT 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AGATGGCAAAGAGGTGGACAAAGTTGTCGGAGCTGATAAAGGTTCGCTTGAGCAGAAGAT 1149
Query 1244 TGCACAGCACTCTTCTTCTAAGTAATGTTTTATCTCTTC 1282
||||||||||||||||||||||||||| ||| |||||||
Sbjct 1150 TGCACAGCACTCTTCTTCTAAGTAATGGTTTCTCTCTTC 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5